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14484 Commits

Author SHA1 Message Date
Leo Famulari e686e633ad
gnu: curl: Replace with 7.50.1 [fixes CVE-2016-{3739,4802,5419,5420,5421]. 
* gnu/packages/curl.scm (curl)[replacement]: New field.
(curl-7.50.1): New variable.
 2016-08-04 12:57:36 -04:00
Tobias Geerinckx-Rice 7ccb874a29
gnu: zsh: Move to shells.scm. 
* gnu/packages/zsh.scm (zsh): Move from here ...
* gnu/packages/shells.scm (zsh): ... to here.
* gnu/packages/zsh.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove zsh.scm.
 2016-08-04 08:17:39 -04:00
Ludovic Courtès 7977d76c0a
Update NEWS. 2016-08-04 08:17:28 -04:00
Mark H Weaver 536fc5f8cd
Merge branch 'core-updates' 2016-08-04 08:17:05 -04:00
Mark H Weaver 0832787e5c
Revert "Merge branch 'core-updates'" 
This reverts commit 455859a50f.
 2016-08-04 08:16:38 -04:00
Mark H Weaver 5b098cc4b9
Revert "gnu: zsh: Move to shells.scm." 
This reverts commit 12b63ab505.
 2016-08-04 08:16:27 -04:00
Mark H Weaver 4541ca986d
Revert "Update NEWS." 
This reverts commit 66edac525b.
 2016-08-04 08:13:56 -04:00
Ricardo Wurmus 8b52167e77
gnu: python-statsmodels: Fix tests. 
* gnu/packages/statistics.scm (python-statsmodels): Add patch to fix tests.
(python2-statsmodels)[propagated-inputs]: Add python2-pytz.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-04 13:40:13 +02:00
Andreas Enge 6ad08117d9
gnu: gtk-doc: Disable parallel tests. 
* gnu/packages/gtk.scm (gtk-doc)[arguments]: Disable parallel tests.
 2016-08-04 12:46:28 +02:00
Andreas Enge 9d19e18d24
gnu: gtk-doc: Update to 1.25. 
* gnu/packages/gtk.scm (gtk-doc): Update to 1.25.
 2016-08-04 12:46:28 +02:00
Ben Woodcroft 752bb44794
gnu: python2-bz2file: Use python-2. 
This is a followup to 124df723a0.
Problem reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages/python.scm (python2-bz2file)[arguments]: Use python-2.
 2016-08-04 20:09:40 +10:00
Andreas Enge 2470d779c9
gnu: qt: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qt): Update to 5.6.1-1.

Co-authored-by: David Craven <david@craven.ch>
 2016-08-04 09:56:03 +02:00
Andreas Enge cce28b0c3a
gnu: qt: Use modify-phases syntax. 
* gnu/packages/qt.scm (qt): Use modify-phases syntax.
 2016-08-04 09:56:03 +02:00
Andreas Enge 7972d8a2e9
gnu: qtbase: Modify .cmake files to enable modules in different packages. 
* gnu/packages/qt.scm (qtbase)[arguments]: In the configure phase, modify
.cmake and .cmake.in files so that find_package honors CMAKE_PREFIX_PATH.
 2016-08-04 01:19:12 +02:00
Ricardo Wurmus 0ea179fd92
gnu: Add GCompris. 
* gnu/packages/education.scm (gcompris): New variable.
 2016-08-03 18:50:26 +02:00
Ludovic Courtès 134f657318
Merge branch 'version-0.11.0' 2016-08-03 18:37:18 +02:00
Ricardo Wurmus 97b9da6897
gnu: Add discrover. 
* gnu/packages/bioinformatics.scm (discrover): New variable.
 2016-08-03 17:20:26 +02:00
ng0 b7194849ad
Rename references to (gnu packages tcsh). 
* gnu/packages/algebra.scm, gnu/packages/boost.scm,
gnu/packages/maths.scm, gnu/packages/tex.scm, gnu/packages/vim.scm:
Change broken references to module (gnu packages tcsh) to (gnu packages
shells).
 2016-08-03 16:22:31 +02:00
Ludovic Courtès 80d944b79a
doc: Fix typos. 
* doc/guix.texi (Application Setup): Use @xref, not @pxref, when
starting a sentence.
(Scheduled Job Execution): Remove extra indent in example; fix typos.
 2016-08-03 16:00:20 +02:00
Ludovic Courtès 1eb43cc30b
doc: Update Texinfo HTML cross-reference file.. 
* doc/htmlxref.cnf: Add entries for 'find' and 'mcron'.
 2016-08-03 16:00:09 +02:00
Ben Woodcroft afde1a264b
gnu: fxtract: Restrict to x86_64-linux. 
* gnu/packages/bioinformatics.scm (fxtract)[supported-systems]: Restrict to
  x86_64-linux.
 2016-08-03 21:22:02 +10:00
Ben Woodcroft 124df723a0
gnu: python-bz2file: Disable tests. 
* gnu/packages/python.scm (python-bz2file)[arguments]: Disable
tests.
(python2-bz2file)[arguments]: New field.
 2016-08-03 21:08:39 +10:00
Ludovic Courtès d76f44e84c
gnu: mdadm: Build without '-Werror' 
* gnu/packages/linux.scm (mdadm)[arguments]: Add 'remove-W-error'
phase.
 2016-08-03 12:10:00 +02:00
Ludovic Courtès 8aceca50cd
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 4420940.
(guix): Set to GUIX-DEVEL.
 2016-08-03 10:56:45 +02:00
Tobias Geerinckx-Rice 12b63ab505
gnu: zsh: Move to shells.scm. 
* gnu/packages/zsh.scm (zsh): Move from here ...
* gnu/packages/shells.scm (zsh): ... to here.
* gnu/packages/zsh.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove zsh.scm.
 2016-08-03 04:54:34 +02:00
Tobias Geerinckx-Rice d754347cb4
gnu: tcsh: Move to shells.scm. 
* gnu/packages/tcsh.scm (tcsh): Move from here ...
* gnu/packages/shells.scm (tcsh): ... to here.
* gnu/packages/tcsh.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove tcsh.scm.
 2016-08-03 04:54:29 +02:00
Tobias Geerinckx-Rice 9a57d3e6a1
gnu: rc: Move to shells.scm. 
* gnu/packages/rc.scm (rc): Move from here ...
* gnu/packages/shells.scm (rc): ... to here.
* gnu/packages/rc.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove rc.scm.
 2016-08-03 04:54:24 +02:00
Tobias Geerinckx-Rice 618977ae38
gnu: fish: Move to shells.scm. 
* gnu/packages/fish.scm (fish): Move from here ...
* gnu/packages/shells.scm (fish): ... to here.
* gnu/packages/fish.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove fish.scm.
 2016-08-03 04:54:18 +02:00
Tobias Geerinckx-Rice c356339d62
gnu: Add dash. 
* gnu/packages/shells.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
 2016-08-03 04:54:11 +02:00
Ludovic Courtès 4420940f20
gnu: guix: Update to 0.11.0. 
* gnu/packages/package-management.scm (guix-0.10.0): Rename to...
(guix-0.11.0): ... this.  Adjust users.
(guix): Set to GUIX-0.11.0.
 2016-08-03 01:19:46 +02:00
Ludovic Courtès 66edac525b
Update NEWS. 2016-08-03 00:28:02 +02:00
Ludovic Courtès 10618627bf
mapped-devices: raid-device-mapping: Avoid non-top-level 'use-modules'. 
Fixes <http://bugs.gnu.org/24135>.
Reported by myglc2 <myglc2@gmail.com>.

* gnu/system/mapped-devices.scm (open-raid-device): Avoid non-top-level
'use-modules' form.
 2016-08-03 00:07:06 +02:00
Ludovic Courtès 9d1e56b76d
guix system: Fix the Shepherd error handling fix. 
This is a followup to aa1e73a996.

* guix/scripts/system.scm (with-shepherd-error-handling): Return two
values when an exception is caught.
 2016-08-02 23:51:12 +02:00
Ludovic Courtès 35c4aec88d
build: Add missing procps patch to the distribution. 
The patch was added to gnu/local.mk in
d46123aade and inadvertently removed in a
subsequent merge.

* gnu/local.mk (dist_patch_DATA): Add procps-non-linux.patch.
 2016-08-02 23:43:29 +02:00
Ludovic Courtès aa1e73a996
guix system: Properly report Shepherd errors when upgrading services. 
Fixes regression introduced in 8bf92e3904.
Reported by myglc2 <myglc2@gmail.com> in <http://bugs.gnu.org/24135>.

* guix/scripts/system.scm (with-shepherd-error-handling): Rename 'body'
to 'mbody'.  Expand to a monadic procedure that runs MBODY.
 2016-08-02 23:43:29 +02:00
Ludovic Courtès e8b652d46b
doc: Clarify distinction between "service" and "Shepherd service". 
* doc/guix.texi (Services): Distinguish "service" and "Shepherd
service".  Add xref to "Shepherd Services".
 2016-08-02 23:43:29 +02:00
Ludovic Courtès 201fff9ea1
doc: Fix typo. 
* doc/guix.texi (Locales): Add missing 'of'.
 2016-08-02 23:43:29 +02:00
Leo Famulari 4e92d76a40
gnu: python-atomicwrites: Update to 1.1.0. 
* gnu/packages/python.scm (python-atomicwrites, python2-atomicwrites):
Update to 1.1.0.
 2016-08-02 16:24:11 -04:00
Francesco Frassinelli 319ac02b5a
gnu: Add Seren. 
* gnu/packages/telephony.scm (seren): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-08-02 22:12:45 +03:00
Pjotr Prins 0a4ebe0148
gnu: Add Elixir. 
* gnu/packages/elixir.scm: New file.
* gnu/packages/patches/elixir-disable-failing-tests.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add module.
(dist_patch_DATA): Add patch.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2016-08-02 18:31:29 +02:00
Leo Famulari deb6482ec6
gnu: libressl: Update to 2.4.2. 
* gnu/packages/tls.scm (libressl): Update to 2.4.2.
 2016-08-02 12:22:59 -04:00
Ludovic Courtès ab3a64507a
system: Define 'GUIX_LOCPATH' to work around 'glibc' package defect. 
Our 'glibc' package currently ignores /run/current-system/locale,
although the intent is to look for locales in that directory.

* gnu/packages/base.scm (glibc/linux): Add comment about
/run/current-system/locale being ignored.
* gnu/system.scm (operating-system-environment-variables): Add
'GUIX_LOCPATH'.
* gnu/tests/base.scm (run-basic-test): Add "locale" test.
 2016-08-02 18:07:19 +02:00
Ludovic Courtès a5c376034f
tests: Make sure threads use separate output ports. 
* tests/publish.scm (with-separate-output-ports): New macro.
<top level>: Use it when spawning new thread.
("/*.narinfo with compression"): Likewise.
 2016-08-02 18:07:19 +02:00
Ludovic Courtès 2c7b48c2fb
tests: Work around Guile bug with unbuffered custom binary input ports. 
Reported by Chris Marusich <cmmarusich@gmail.com>
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=24060#19>

* tests/publish.scm (http-get-port): Remove 'setvbuf' call for the
response port.
 2016-08-02 18:07:19 +02:00
Alex Sassmannshausen e2b12a55c1
gnu: Add perl-log-any-adapter-log4perl. 
* gnu/packages/perl.scm (perl-log-any-adapter-log4perl): New variable.
 2016-08-02 16:39:08 +02:00
Alex Sassmannshausen 9ec9e49466
gnu: Add perl-log-log4perl. 
* gnu/packages/perl.scm (perl-log-log4perl): New variable.
 2016-08-02 16:39:08 +02:00
Alex Sassmannshausen cf5e49cdc5
gnu: Add perl-log-any. 
* gnu/packages/perl.scm (perl-log-any): New variable.
 2016-08-02 16:39:08 +02:00
Ricardo Wurmus fede3a903e
gnu: Add emacs-visual-fill-column. 
* gnu/packages/emacs.scm (emacs-visual-fill-column): New variable.
 2016-08-02 15:20:43 +02:00
Christopher W. Carpenter 3701f014b1
gnu: ccl: Update to 1.11. 
* gnu/packages/lisp.scm (ccl): Update to 1.11.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-08-02 21:04:56 +08:00
Ricardo Wurmus dda3627141
gnu: r-variantannotation: Update to 1.18.6. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.6.
 2016-08-02 14:47:46 +02:00