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17576 Commits

Author SHA1 Message Date
Efraim Flashner 0e88ada940
gnu: Remove pcre-CVE-2016-3191.patch. 
This is a follow-up to 026ee1a5a6.

* gnu/packages/patches/pcre-CVE-2016-3191.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-01-23 10:28:15 +02:00
Leo Famulari 026ee1a5a6
gnu: pcre: Update to 8.40. 
* gnu/packages/pcre.scm (pcre): Update to 8.40.
[source]: Remove obsolete patch 'pcre-CVE-2016-3191.patch'.
 2017-01-23 00:55:10 -05:00
Ludovic Courtès 33ae7d4385
gnu: gcc: Properly set the dynamic linker file name on GNU/Hurd. 
* gnu/packages/gcc.scm (gcc-4.7)[arguments]: In 'pre-configure' phase,
match 'GNU_USER_DYNAMIC_LINKER' in addition to 'GLIBC_DYNAMIC_LINKER'.
This fixes GNU/Hurd cross-compilation as reported at
<https://lists.gnu.org/archive/html/guix-devel/2017-01/msg01731.html>.
 2017-01-22 13:13:36 +01:00
Ludovic Courtès c8b44fc107
gnu: sed: Do not attempt to rebuild 'doc/sed.1'. 
* gnu/packages/base.scm (sed)[arguments]: Add 'dont-rebuild-sed.1'
phase.
[native-inputs]: Remove.
 2017-01-22 13:13:36 +01:00
Ludovic Courtès 8a296947a6
gnu: sed: Use the same phases whether or not we're cross-compiling. 
* gnu/packages/base.scm (sed)[arguments]: Make #:phases argument
unconditional.  In 'patch-test-suite' phase, use (which "sh") instead of
referring to the "bash" input.
 2017-01-22 13:13:35 +01:00
Leo Famulari b848f98e04
gnu: bash: Update to patch level 11. 
* gnu/packages/bash.scm (%patch-series-4.4): Add patches 6 through 11.
 2017-01-21 21:36:16 -05:00
Ludovic Courtès 168c400045
gnu: ld-wrapper-boot0: Remove workaround for <http://bugs.gnu.org/24832>. 
Fixes <http://bugs.gnu.org/24832>.

* gnu/packages/commencement.scm (ld-wrapper-boot0): Change the first
'make-ld-wrapper' argument to "ld-wrapper-boot0"; change #:target to
BOOT-TRIPLET.
 2017-01-20 22:57:47 +01:00
Ludovic Courtès 677b30221b
hydra: Add "i586-pc-gnu" as a cross-compilation target. 
* build-aux/hydra/gnu-system.scm (%cross-targets): Add "i586-pc-gnu".
 2017-01-20 22:32:47 +01:00
Kei Kebreau 539108e113
gnu: tk: Update to 8.6.6. 
* gnu/packages/tcl.scm (tk): Update to 8.6.6.
 2017-01-18 16:03:00 -05:00
Kei Kebreau 9f19f3a0ad
gnu: tcl: Update to 8.6.6. 
* gnu/packages/tcl.scm (tcl): Update to 8.6.6.
 2017-01-18 15:32:58 -05:00
Efraim Flashner 6cd0045347
gnu: zlib: Use 'modify-phases' syntax. 
* gnu/packages/compression.scm (zlib)[arguments]: Use 'modify-phases'.
 2017-01-16 09:54:47 +02:00
Efraim Flashner 2b8bea03b6
gnu: zlib: Update to 1.2.11. 
* gnu/packages/compression.scm (zlib): Update to 1.2.11.
 2017-01-16 09:52:54 +02:00
Marius Bakke e58db46bb8
gnu: sqlite: Update to 3.16.2. 
* gnu/packages/databases.scm (sqlite): Update to 3.16.2.
 2017-01-15 23:37:04 +01:00
Marius Bakke e9384e3b74
gnu: ed: Update to 1.14.1. 
* gnu/packages/ed.scm (ed): Update to 1.14.1.
[arguments]: Make sure 'patch-test-suite' phase ends with #t.
[home-page]: Use HTTPS.
 2017-01-12 23:28:59 +01:00
Leo Famulari 8ee40f6849
Revert "Revert "gnu: gawk: Don't replace 'sh' reference with 'bash'."" 
This reverts commit f537ad0bf3.
 2017-01-06 17:16:03 -05:00
Leo Famulari e483139141
gnu: glibc/linux: Use /bin/sh instead of /bin/bash as the default shell. 
* gnu/packages/base.scm (glibc/linux)[arguments]: Use /bin/sh for scripts that
lack a shebang.
 2017-01-06 17:16:03 -05:00
Leo Famulari 11b6687609
gnu: glibc/linux: Don't replace 'sh' reference with 'bash'. 
* gnu/packages/base.scm (glibc/linux)[arguments]: Use /bin/sh instead of
/bin/bash in 'pre-configure' phase.
 2017-01-06 17:16:03 -05:00
Leo Famulari 60f3ad8c07
gnu: gnu-make: Don't replace 'sh' reference with 'bash'. 
* gnu/packages/base.scm (gnu-make)[arguments]: Use /bin/sh instead of /bin/bash
in 'set-default-shell' phase.
 2017-01-06 17:16:02 -05:00
Leo Famulari fa6428a19f
gnu: m4: Don't replace 'sh' reference with 'bash'. 
* gnu/packages/m4.scm (m4)[arguments]: Use /bin/sh instead of /bin/bash in
'pre-check' phase.
 2017-01-06 17:16:02 -05:00
Leo Famulari 74288230ea
Merge branch 'master' into core-updates 2017-01-06 17:14:41 -05:00
Leo Famulari aa21c764d6
gnu: python-pycrypto: Fix CVE-2013-7459. 
* gnu/packages/patches/python-pycrypto-CVE-2013-7459.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto)[source]: Use the
patch. Use pypi-uri.
 2017-01-06 13:50:18 -05:00
Leo Famulari 707c65aad7
gnu: nspr: Update to 4.13.1. 
* gnu/packages/gnuzilla.scm (nspr): Update to 4.13.1.
 2017-01-06 13:09:05 -05:00
Ricardo Wurmus 03476a23ff
guix: Add Docker image export. 
* guix/docker.scm: New file.
* Makefile.am (MODULES): Register it.
* guix/scripts/archive.scm (show-help, %options, guix-archive): Add
support for "--format".
* doc/guix.texi (Invoking guix archive): Document it.
 2017-01-06 16:44:00 +01:00
Ricardo Wurmus 3a3bf2f819
gnu: Add r-copywriter. 
* gnu/packages/bioinformatics.scm (r-copywriter): New variable.
 2017-01-06 16:31:19 +01:00
Ricardo Wurmus d407bdb931
gnu: Add r-copyhelper. 
* gnu/packages/bioinformatics.scm (r-copyhelper): New variable.
 2017-01-06 16:31:14 +01:00
Ricardo Wurmus 6193563a36
gnu: Add r-chipseq. 
* gnu/packages/bioinformatics.scm (r-chipseq): New variable.
 2017-01-06 16:31:02 +01:00
David Craven 974e02da76
file-systems: Refactor file system detection logic. 
* gnu/build/file-systems.scm (read-superblock,
  null-terminated-latin1->string): New variables.
  (sub-bytevector): Move to general section.
  (ext2-superblock?, read-ext2-superblock): New variables.
  (ext2-superblock-uuid, ext2-superblock-volume-name): Use
  sub-bytevector and null-terminated-latin1->string.
  (%ext2-sblock-magic, %ext2-sblock-creator-os, %ext2-sblock-uuid,
  %ext2-sblock-volume-name): Inline constants.
  (luks-superblock?, read-luks-header): New variables.
  (%luks-header-size, %luks-magic): Inline.
  (partition-label-predicate, partition-uuid-predicate,
  luks-partition-uuid-predicate): Use new functions.
 2017-01-06 15:06:42 +01:00
Christopher Baines fab2784dbb
gnu: gnome-tweak-tool: Add missing inputs. 
* gnu/packages/gnome.scm (gnome-tweak-tool)[inputs]: Add gnome-desktop
and libsoup.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Christopher Baines adb41527ad
gnu: gnome-tweak-tool: Make propagated-inputs just inputs. 
* gnu/packages/gnome.scm (gnome-tweak-tool)[propagated-inputs]: Merge
with...
[inputs]: ... this.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Christopher Baines 9af6bce1e1
gnu: gnome-tweak-tool: Wrap program to set 'GI_TYPELIB_PATH'. 
* gnu/packages/gnome.scm (gnome-tweak-tool)[arguments]: Add
'wrap-program' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Christopher Baines 7ef335b0e8
gnu: gnome-tweak-tool: Use glib-or-gtk-build-system. 
This allows gobject introspection namespaces to be found.

* gnu/packages/gnome.scm (gnome-tweak-tool)[build-system]: Set to
GLIB-OR-GTK-BUILD-SYSTEM.
[arguments]: Use %GLIB-OR-GTK-BUILD-SYSTEM-MODULES in #:imported-modules.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Ben J Woodcroft dbf9d37114
gnu: bioruby: Update to 1.5.1. 
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.1.
 2017-01-06 19:06:07 +10:00
Ben J Woodcroft 0c37e2a3d2
gnu: cd-hit: Update to 4.6.6. 
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.6.
 2017-01-06 19:06:03 +10:00
Leo Famulari e50d5b8c9d
gnu: khal: Disable failing tests. 
* gnu/packages/patches/khal-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/calendar.scm (khal): Use it.
 2017-01-06 03:19:40 -05:00
Leo Famulari e0c32fc817
gnu: vdirsyncer: Update to 0.14.1. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.1.
 2017-01-06 03:19:40 -05:00
Leo Famulari 491b78a8e8
gnu: python-icalendar: Update to 3.11.1. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.1.
 2017-01-06 03:19:36 -05:00
Ludovic Courtès 76c31074c8
derivations: Share a cache between 'derivation' and 'read-derivation'. 
This leads a 13% speedup on 'guix build libreoffice -d' and 18% on
'guix build gnome -d'.

* guix/derivations.scm (%derivation-cache): New variable.
(read-derivation): Use it instead of the private 'cache' variable.
(derivation): Populate %DERIVATION-CACHE before returning.
 2017-01-05 23:45:39 +01:00
Ludovic Courtès fbec5abeef
gnu: gv: Do not propagate Ghostscript. 
* gnu/packages/gv.scm (gv)[propagated-inputs]: Remove.
[arguments]: New field.
[inputs]: Add GHOSTCRIPT/X.
 2017-01-05 23:45:38 +01:00
Ludovic Courtès 6d943e553d
derivations: Micro-optimize 'write-derivation'. 
* guix/derivations.scm (write-derivation)[write-input]: Use 'display'
instead of 'write' for PATH.
Use 'simple-format' instead of 'format', and '~a' instead of '~s' for
SYSTEM and BUILDER.
 2017-01-05 23:45:38 +01:00
Alex Kost ec14d2157d
gnu: emacs-smartparens: Update to 1.9.0. 
* gnu/packages/emacs.scm (emacs-smartparens): Update to 1.9.0.
 2017-01-06 00:31:03 +03:00
Alex Kost 922ab34446
gnu: magit: Update to 2.10.0. 
* gnu/packages/emacs.scm (magit, emacs-magit-popup): Update to 2.10.0.
 2017-01-06 00:29:23 +03:00
Alex Kost cfb9026aa5
gnu: emacs-with-editor: Update to 2.5.9. 
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.9.
 2017-01-06 00:29:23 +03:00
Danny Milosavljevic 6c8a387af2
gnu: Add ghc-markdown-unlit. 
* gnu/packages/haskell.scm (ghc-markdown-unlit): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 18:47:40 +01:00
Tobias Geerinckx-Rice 12c15242f4
gnu: beep: Ignore substitute* return value. 
* gnu/packages/terminals.scm (beep)[arguments]: End 'patch-makefile phase
with truth.
 2017-01-05 17:40:54 +01:00
Leo Famulari 92e779592d
gnu: libtool: Correct replacement shebang. 
* gnu/packages/autotools.scm (libtool)[arguments]: Correct replacement
shebang in 'restore-ltmain-shebang' phase.
 2017-01-05 11:32:44 -05:00
David Thompson 543bd0eede
gnu: sdl2: Add fcitx input. 
* gnu/packages/sdl.scm (sdl2)[inputs]: Add fcitx.
 2017-01-05 11:27:10 -05:00
David Thompson e0101b54b7
gnu: sdl2: Fix double input events bug. 
* gnu/packages/sdl.scm (sdl2)[inputs]: Add dbus, gblib, and ibus.
 2017-01-05 11:22:32 -05:00
Leo Famulari f537ad0bf3
Revert "gnu: gawk: Don't replace 'sh' reference with 'bash'." 
This commit causes too many rebuilds. It will be re-committed to core-updates.

This reverts commit 5b2834ae79.
 2017-01-05 11:22:07 -05:00
Leo Famulari 5b2834ae79
gnu: gawk: Don't replace 'sh' reference with 'bash'. 
* gnu/packages/gawk.scm (gawk)[arguments]: Use /bin/sh instead of /bin/bash in
'set-shell-file-name' phase.
 2017-01-05 11:06:06 -05:00
Leo Famulari 78c172a56e
gnu: libtool: Make sure all phases return a successful value. 
* gnu/packages/autotools.scm (libtool)[arguments]: Return #t from 'pre-check'
and 'restore-ltmain-shebang' phases.
 2017-01-05 10:46:34 -05:00