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41426 Commits

Author SHA1 Message Date
Ricardo Wurmus 1081e8266f
gnu: r-rstudioapi: Update to 0.10. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.10.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 086ca4deae
gnu: r-git2r: Update to 0.25.2. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.25.2.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 7590441976
gnu: r-tibble: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.1.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 86c8b2f5f5
gnu: r-knitr: Update to 1.22. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.22.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus b6c5b0aca2
gnu: r-highr: Update to 0.8. 
* gnu/packages/statistics.scm (r-highr): Update to 0.8.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 1f2862b1be
gnu: r-lazyeval: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.2.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus a9c8127290
gnu: r-stringi: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.4.3.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 2bf224d0ca
gnu: r-permute: Update to 0.9-5. 
* gnu/packages/statistics.scm (r-permute): Update to 0.9-5.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 35663627fb
gnu: r-matrix: Update to 1.2-16. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-16.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 95bf4508e5
gnu: qtractor: Update to 0.9.6. 
* gnu/packages/music.scm (qtractor): Update to 0.9.6.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 8e91ad0b5c
gnu: r-ape: Update to 5.3. 
* gnu/packages/cran.scm (r-ape): Update to 5.3.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus db39269c89
gnu: r-maldiquant: Update to 1.19.2. 
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.19.2.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 42f344faf7
gnu: Add r-libcoin. 
* gnu/packages/cran.scm (r-libcoin): New variable.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus d1021421d9
gnu: r-callr: Update to 3.2.0. 
* gnu/packages/cran.scm (r-callr): Update to 3.2.0.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus df04509932
gnu: r-dendextend: Update to 1.10.0. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.10.0.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus ffd6e2fd8f
gnu: r-sys: Update to 3.1. 
* gnu/packages/cran.scm (r-sys): Update to 3.1.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus 28d0eb2565
gnu: r-diversitree: Fix typo. 
* gnu/packages/bioinformatics.scm (r-diversitree)[propagated-inputs]: Fix typo
in package labels.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus d14c770d55
gnu: Add r-insight. 
* gnu/packages/cran.scm (r-insight): New variable.
 2019-03-21 00:02:48 +01:00
Mark H Weaver 8b672b2c48
gnu: blender: Restore version 2.79b for systems without OpenGL 3. 
Fixes <https://bugs.gnu.org/33882>.

* gnu/packages/graphics.scm (blender-2.79): New variable.
(blender)[description]: Remove obsolete claim that the stable
release no longer works in Guix.
* gnu/packages/patches/blender-2.79-newer-ffmpeg.patch,
gnu/packages/patches/blender-2.79-python-3.7-fix.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-03-20 18:20:36 -04:00
Ricardo Wurmus 933cc19684
gnu: r-annotationhub: Update to 2.14.5. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.5.
 2019-03-20 22:32:37 +01:00
Ricardo Wurmus e49d5d34ed
gnu: r-genomicfeatures: Update to 1.34.6. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.6.
 2019-03-20 22:32:32 +01:00
Ricardo Wurmus 2b83d218d8
gnu: r-variantannotation: Update to 1.28.13. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.13.
 2019-03-20 22:32:25 +01:00
Ricardo Wurmus 0adb6f207b
gnu: r-category: Update to 2.48.1. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.1.
 2019-03-20 22:32:17 +01:00
Ricardo Wurmus e014dc78f0
gnu: r-dexseq: Update to 1.28.3. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.3.
 2019-03-20 22:32:11 +01:00
Ricardo Wurmus 877fd189c4
gnu: r-annotate: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.60.1.
 2019-03-20 22:31:59 +01:00
Ricardo Wurmus ceab33feee
gnu: guile-wm: Compile and use canonical directories. 
Fixes <https://bugs.gnu.org/34922>.

* gnu/packages/guile-wm.scm (guile-wm)[arguments]: Rename "set-go-directory"
phase to "set-module-directory"; change "set-load-path" phase to wrap
executable in the correct environment variables; add phase "install-go-files".
 2019-03-20 21:04:31 +01:00
Tobias Geerinckx-Rice 6854a5d5f7
gnu: obs: Update to 23.0.2. 
* gnu/packages/video.scm (obs): Update to 23.0.2.
 2019-03-20 20:42:42 +01:00
Tobias Geerinckx-Rice 6b455f8c55
gnu: perl-plack-middleware-methodoverride: Update to 0.20. 
* gnu/packages/web.scm (perl-plack-middleware-methodoverride): Update to 0.20.
 2019-03-20 20:42:41 +01:00
Tobias Geerinckx-Rice 84cd5bd7f8
gnu: perl-uri-template: Update to 0.24. 
* gnu/packages/web.scm (perl-uri-template): Update to 0.24.
 2019-03-20 20:42:41 +01:00
Tobias Geerinckx-Rice 0341fb9b68
gnu: mkfontscale: Update to 1.2.0. 
* gnu/packages/xorg.scm (mkfontscale): Update to 1.2.0.
 2019-03-20 20:42:41 +01:00
Tobias Geerinckx-Rice bcc27a6533
gnu: xf86-video-ati: Update to 19.0.1. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 19.0.1.
 2019-03-20 20:42:40 +01:00
Tobias Geerinckx-Rice cbea33132a
gnu: xf86-video-amdgpu: Update to 19.0.1. 
* gnu/packages/xorg.scm (xf86-video-amdgpu): Update to 19.0.1.
 2019-03-20 20:42:40 +01:00
Tobias Geerinckx-Rice c21242d920
gnu: pencil2d: Update to 0.6.3. 
* gnu/packages/animation.scm (pencil2d): Update to 0.6.3.
 2019-03-20 20:42:40 +01:00
Tobias Geerinckx-Rice dee92e65a2
gnu: python-colorspacious: Don't use unstable tarball. 
* gnu/packages/python-xyz.scm (python-colorspacious)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-20 20:42:39 +01:00
Mark H Weaver c74da2b6c4
gnu: linux-libre: Update to 5.0.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.3.
(%linux-libre-hash): Update hash.
 2019-03-20 15:34:16 -04:00
Mark H Weaver c65cce08b4
gnu: linux-libre@4.19: Update to 4.19.30. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.30.
(%linux-libre-4.19-hash): Update hash.
 2019-03-20 15:34:14 -04:00
Mark H Weaver 7cbbee4a85
gnu: linux-libre@4.14: Update to 4.14.107. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.107.
(%linux-libre-4.14-hash): Update hash.
 2019-03-20 15:34:12 -04:00
Mark H Weaver c62d0e678f
gnu: linux-libre@4.9: Update to 4.9.164. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.164.
 2019-03-20 15:34:09 -04:00
Ricardo Wurmus c16423f143
services: Add nslcd-service-type. 
* gnu/services/authentication.scm (nslcd-service-type, nslcd-configuration,
%nslcd-accounts): New variables.
(uglify-field-name, value->string, serialize-field, serialize-list,
ssl-option?, tls-reqcert-option?, deref-option?,
comma-separated-list-of-strings?, serialize-ignore-users-option, log-option?,
serialize-log-option, valid-map?, scope-option?, serialize-scope-option,
map-entry?, list-of-map-entries?, filter-entry?, list-of-filter-entries?,
serialize-filter-entry, serialize-list-of-filter-entries, serialize-map-entry,
serialize-list-of-map-entries, nslcd-config-file, nslcd-etc-service,
nslcd-shepherd-service, pam-ldap-pam-services, pam-ldap-pam-service,
generate-nslcd-documentation): New procedures.
* gnu/tests/ldap.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (LDAP Services): Document it.
 2019-03-20 20:31:15 +01:00
Rutger Helling bcf66fc2e7
gnu: samba: Update to 4.10.0. 
* gnu/packages/samba.scm (samba): Update to 4.10.0.
[native-inputs]: Replace python-2 with python.
 2019-03-20 20:25:51 +01:00
Rutger Helling 14e6b6a0ae
gnu: xpra: Update to 2.5. 
* gnu/packages/xorg.scm (xpra): Update to 2.5.
 2019-03-20 20:25:51 +01:00
Tobias Geerinckx-Rice 5493320274
gnu: iproute2: Update to 5.0.0. 
* gnu/packages/linux.scm (iproute): Update to 5.0.0.
[inputs, native-inputs]: Order alphabetically.
 2019-03-20 16:21:06 +01:00
Ricardo Wurmus af184b68e7
gnu: 389-ds-base: Use more global directories. 
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Pass
"with-instconfigdir"; add phase "overwrite-default-locations" to overwrite
defaults for "initconfig_dir", the certificate location, and the location of
the defaults file.
 2019-03-20 12:19:56 +01:00
Ricardo Wurmus 19a0a060d2
gnu: 389-ds-base: Fix tool references. 
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Rename phase
"fix-includes" to "fix-references" and fix references to certutil and
c_rehash.
[inputs]: Add nss:bin.
 2019-03-20 12:19:55 +01:00
Ricardo Wurmus 35f9c6628f
gnu: Add adapterremoval. 
* gnu/packages/bioinformatics.scm (adapterremoval): New variable.
 2019-03-20 12:19:55 +01:00
Ricardo Wurmus 7627bad6a7
gnu: 389-ds-base: Set localstatedir to /var. 
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Set localstatedir to
/var.
 2019-03-20 12:19:55 +01:00
Ricardo Wurmus cbc6a28b67
gnu: 389-ds-base: Update to 1.4.0.21. 
* gnu/packages/openldap.scm (389-ds-base): Update to 1.4.0.21.
[arguments]: Add phase "fix-includes".
[inputs]: Add cracklib.
 2019-03-20 12:19:55 +01:00
Pierre Neidhardt 3d7a7b1dd6
gnu: emacs-helm-notmuch: Update to 1.2. 
* gnu/packages/emacs-xyz.scm (emacs-helm-notmuch): Update to 1.2.
 2019-03-20 11:58:37 +01:00
Arun Isaac 7c45593b44
gnu: libinfinity: Update to 0.7.1. 
* gnu/packages/gobby.scm (libinfinity): Update to 0.7.1.
[inputs]: Remove gtk+-2. Add gtk+.
 2019-03-20 15:40:43 +05:30
Mark H Weaver 6d96a4f769
gnu: icecat: Update to 60.6.0-guix1 [security-fixes]. 
Includes fixes for CVE-2018-18506, CVE-2019-9788, CVE-2019-9790,
CVE-2019-9791, CVE-2019-9792, CVE-2019-9793, CVE-2019-9794, CVE-2019-9795,
CVE-2019-9796, and CVE-2019-9801.

* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.0-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
 2019-03-19 22:36:44 -04:00