17ae31b7a8
gnu: r-hdf5r: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-hdf5r): Update to 1.2.0.
2019-04-21 10:20:56 +02:00
dbcd503c46
gnu: guile-parted: Update to 0.0.1.
...
* gnu/packages/guile-xyz.scm (guile-parted): Update to 0.0.1.
2019-04-21 09:48:26 +02:00
442a11f68f
gnu: guile-newt: Update to 0.0.1.
...
* gnu/packages/guile-xyz.scm (guile-newt): Update to 0.0.1.
2019-04-21 09:45:36 +02:00
1b0b1651b1
gnu: mtools: 'mformat' initializes boot sector before writing it.
...
This is the last bit fixing <https://bugs.gnu.org/35283 >.
Previously, 'mformat' (used by 'grub-mkrescue') would pass uninitialized
bytes to write(2), leading to non-deterministic FAT image contents.
This patch fixes that.
* gnu/packages/patches/mtools-mformat-uninitialized.patch: New file.
* gnu/packages/mtools.scm (mtools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-04-21 00:51:19 +02:00
5502fbd7fd
gnu: valgrind: Add 3.15.0.
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* gnu/packages/valgrind.scm (valgrind-3.15): New variable.
2019-04-21 00:51:19 +02:00
605815023c
vm: Use a fixed FAT serial number for 'efi.img' in ISO images.
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Partly fixes <https://bugs.gnu.org/35283 >.
* gnu/build/vm.scm (make-iso9660-image): Set the
'GRUB_FAT_SERIAL_NUMBER' environment variable.
2019-04-21 00:51:18 +02:00
52b5fe5bcf
gnu: grub: 'grub-mkrescue' honors 'GRUB_FAT_SERIAL_NUMBER'.
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* gnu/packages/patches/grub-efi-fat-serial-number.patch: New file.
* gnu/packages/bootloaders.scm (grub)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-04-21 00:51:18 +02:00
6901b9248e
vm: Reset file timestamps of the EFI image in ISO images.
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Partly fixes <https://bugs.gnu.org/35283 >.
* gnu/build/vm.scm (make-iso9660-image): Set the 'SOURCE_DATE_EPOCH'
environment variable.
2019-04-21 00:51:18 +02:00
833480cc1f
vm: Reset file timestamps in ISO images.
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Partly fixes <https://bugs.gnu.org/35283 >.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.
* gnu/build/vm.scm (make-iso9660-image): Pass "-volume_date
all_file_dates =1".
2019-04-21 00:51:18 +02:00
7859191210
install: Pass "modprobe.blacklist=radeon".
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* gnu/system/install.scm (installation-os)[kernel-arguments]: New field.
2019-04-21 00:51:18 +02:00
a3e6cf9876
gnu: Add git-lfs.
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* gnu/packages/version-control.scm (git-lfs): New variable.
2019-04-20 16:40:35 -04:00
afabb9ecfb
gnu: ibus-libpinyin: Add missing runtime input.
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* gnu/packages/ibus.scm (ibus-libpinyin)[inputs]: Add python-pygobject.
2019-04-20 12:33:10 +02:00
446130300e
gnu: libpinyin: Update to 2.3.0.
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* gnu/packages/ibus.scm (libpinyin): Update to 2.3.0.
2019-04-20 12:26:12 +02:00
811eae11cd
gnu: ibus-libpinyin: Update to 1.11.0.
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* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.11.0.
2019-04-20 12:26:12 +02:00
b2c6b467f3
gnu: ibus: Update to 1.5.20.
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* gnu/packages/ibus.scm (ibus): Update to 1.5.20.
[arguments]: Remove make-flags; remove "--disable-python2" from
configure-flags; add build phase "patch-python-target-directories".
[inputs]: Replace intltool with gnu-gettext.
2019-04-20 12:26:08 +02:00
1e72a23d49
gnu: rct: Be more idiomatic.
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* gnu/packages/cpp.scm (rct): Move the call to 'git-version' into the
package definition.
[source]: Explicitly include the source URI rather than using
'home-page'.
2019-04-19 15:14:54 -04:00
18f8770d58
gnu: linux-libre: Update to 5.0.8.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.8.
(%linux-libre-hash): Update hash.
2019-04-19 14:29:20 -04:00
5547653eb8
gnu: linux-libre@4.19: Update to 4.19.35.
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* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.35.
(%linux-libre-4.19-hash): Update hash.
2019-04-19 14:27:42 -04:00
3f6b7699cd
gnu: linux-libre@4.14: Update to 4.14.112.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.112.
(%linux-libre-4.14-hash): Update hash.
2019-04-19 14:26:59 -04:00
a85190ddd0
gnu: linux-libre@4.9: Update to 4.9.169.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.169.
2019-04-19 14:26:19 -04:00
107850b391
gnu: Add r-styler.
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* gnu/packages/cran.scm (r-styler): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-04-19 19:14:24 +02:00
2613bab627
gnu: grammalecte: Update to 1.0.1.
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* gnu/packages/dictionaries.scm (grammalecte): Update to 1.0.1.
[source]: Update URL.
2019-04-19 18:37:22 +02:00
60ecacdeaa
gnu: linkchecker: Shorten patch file name.
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This file name was too long for 'tar', as reported by 'guix lint'.
* gnu/packages/patches/linkchecker-mark-more-tests-that-require-the-network.patch:
Rename to...
* gnu/packages/patches/linkchecker-tests-require-network.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/web.scm (linkchecker)[source]: Likewise.
2019-04-19 17:46:40 +02:00
30a6cd7cd0
gnu: ocaml-dose3: Shorten patch file name.
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This file name was too long for 'tar', as reported by 'guix lint'.
* gnu/packages/patches/ocaml-dose3-Add-unix-as-dependency-to-dose3.common-in-META.in.patch:
Rename to...
* gnu/packages/patches/ocaml-dose3-add-unix-dependency.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ocaml.scm (ocaml-dose3)[source]: Adjust accordingly.
2019-04-19 17:46:40 +02:00
04b5ac212f
build: Show completion percentage while building.
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* build-aux/compile-all.scm (%): New procedure.
(command-line): Use it to report completion.
2019-04-19 17:46:40 +02:00
35a09fd9c1
maint: Build all the 'guix' packages in parallel.
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Until now, the 'guix' package shipped in binary tarballs and system
images would be built sequentially for each system type, one at a time.
Now all of them can potentially be built in parallel.
* Makefile.am (system_flags): New function.
(release): Run "guix build guix" before "make binary-tarballs" and
before "guix system disk-image" to build all the 'guix' packages in
parallel.
2019-04-19 17:46:40 +02:00
24963c1307
maint: 'release' clears gettext-induced changes in doc/.
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* Makefile.am (release): Run "git checkout ." in doc/
2019-04-19 17:46:40 +02:00
ea261dea0c
guix build: Accept multiple '-s' options.
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* guix/scripts/build.scm (%default-options): Remove 'system'.
(%options) <--system>: Keep previous occurrences of 'system in RESULT.
(options->derivations)[system]: Remove.
[systems, things-to-build]: New variables.
[compute-derivation]: New procedure.
Iterate on all of SYSTEMS to compute the derivations of THINGS-TO-BUILD.
* tests/guix-build.sh: Add test for one and multiple '-s' flags.
* doc/guix.texi (Additional Build Options): Document this behavior.
2019-04-19 17:46:40 +02:00
296da6e624
gnu: r-seurat: Update to 3.0.0.
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* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0.
[propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc,
r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and
r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang,
r-rsvd, r-scales, and r-sctransform.
2019-04-19 15:38:47 +02:00
9b86fea05f
gnu: Add r-sctransform.
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* gnu/packages/cran.scm (r-sctransform): New variable.
2019-04-19 15:38:46 +02:00
7015ae6881
gnu: r-urltools: Update to 1.7.3.
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* gnu/packages/cran.scm (r-urltools): Update to 1.7.3.
2019-04-19 14:43:34 +02:00
f0826fec46
gnu: r-rdpack: Update to 0.11-0.
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* gnu/packages/cran.scm (r-rdpack): Update to 0.11-0.
2019-04-19 14:43:29 +02:00
5ac82ee33b
gnu: r-sdmtools: Update to 1.1-221.1.
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* gnu/packages/cran.scm (r-sdmtools): Update to 1.1-221.1.
2019-04-19 14:43:23 +02:00
3d60c80713
gnu: r-hardyweinberg: Update to 1.6.2.
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* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.2.
2019-04-19 14:43:17 +02:00
8e79d820d0
gnu: r-clipr: Update to 0.6.0.
...
* gnu/packages/cran.scm (r-clipr): Update to 0.6.0.
2019-04-19 14:43:10 +02:00
664a6bc1a6
gnu: r-caret: Update to 6.0-83.
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* gnu/packages/statistics.scm (r-caret): Update to 6.0-83.
2019-04-19 14:42:51 +02:00
f00067dbfb
gnu: klick: Fix build with latest scons.
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* gnu/packages/music.scm (klick)[arguments]: Patch "SConstruct" file to make
it compatible with the current version of scons.
2019-04-19 14:24:04 +02:00
35259437a7
gnu: perl-datetime-timezone: Fix missing timezone data.
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I noticed this when using Sqitch, on systems without /usr/share/zoneinfo,
actions like deploy fail.
* gnu/packages/perl.scm (perl-datetime-timezone)[arguments]: Add 'patch-tzdata
phase to replace /usr/share/zoneinfo with a reference to the tzdata package.
[inputs]: Add the tzdata package.
2019-04-19 11:42:30 +01:00
f32164abd3
gnu: python2-send2trash: Don't inherit properties from python-send2trash.
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This is a follow-up to commit 20b3fde776
2019-04-19 02:29:43 +02:00
20b3fde776
gnu: python-send2trash: Really delay Python2 variant.
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This is a follow-up to commit 4782a06f45
2019-04-19 01:57:34 +02:00
cbeb891344
gnu: gpgme: Update to 1.13.0.
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* gnu/packages/gnupg.scm (gpgme): Update to 1.13.0.
[source](patches): Remove.
2019-04-19 01:48:07 +02:00
4782a06f45
gnu: python-send2trash: Properly delay python2 variant.
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* gnu/packages/python-xyz.scm (python2-send2trash)[properties]: Move from here ...
(python-send2trash)[properties]: ... to here.
2019-04-19 01:48:07 +02:00
c105e50903
gnu: python-service-identity: Update to 18.1.0.
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* gnu/packages/python-crypto.scm (python-service-identity): Update to 18.1.0.
2019-04-19 01:48:07 +02:00
1adde06e4e
gnu: python-jsonschema: Update to 3.0.1.
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* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.0.1.
[arguments]: Adjust check phase for Twisted instead of nosetests.
[native-inputs]: Remove PYTHON-NOSE and PYTHON-VCVERSIONER. Add
PYTHON-SETUPTOOLS-SCM and PYTHON-TWISTED.
[propagated-inputs]: Add PYTHON-ATTRS, PYTHON-PYRSISTENT and PYTHON-SIX.
(python2-jsonschema)[native-inputs, propagated-inputs]: Inherit.
2019-04-19 01:48:07 +02:00
ea43f0d581
gnu: Add python-pyrsistent.
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* gnu/packages/python-xyz.scm (python-pyrsistent, python2-pyrsistent): New
public variables.
2019-04-19 01:48:07 +02:00
52ca1c4abf
gnu: python-twisted: Update to 19.2.0.
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* gnu/packages/python-xyz.scm (python-twisted): Update to 19.2.0.
[propagated-inputs]: Add PYTHON-PYHAMCREST.
2019-04-19 01:48:06 +02:00
919d80a0e0
gnu: python-automat: Update to 0.7.0.
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* gnu/packages/python-xyz.scm (python-automat): Update to 0.7.0.
2019-04-19 01:48:06 +02:00
bcfb8fac36
gnu: python-m2r: Update to 0.2.1.
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* gnu/packages/python-xyz.scm (python-m2r): Update to 0.2.1.
2019-04-19 01:48:06 +02:00
e95c983706
gnu: python-idna: Update to 2.8.
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* gnu/packages/python-xyz.scm (python-idna): Update to 2.8.
2019-04-19 01:48:06 +02:00
431a0d26c8
gnu: python-hyperlink: Update to 19.0.0.
...
* gnu/packages/python-web.scm (python-hyperlink): Update to 19.0.0.
2019-04-19 01:48:06 +02:00
Ricardo Wurmus