* guix/import/cran.scm (package->upstream-name): Return #f if url
start and end index could not be determined.
(cran-package?): Check if the upstream-name can be extracted from
given package.
* tests/cran.scm: Add "r-minimal is not a cran package" to make sure that
r-minimal is not detected as a cran package.
This fixes a failure of guix refresh on r-minimal because no
upsteam-name can be determined from ".../R-version.tar.gz" uri.
This is a followup to bc3c41ce36.
* tests/cpan.scm ("cpan->guix-package"): Add #:verify-certificate?
parameter in 'url-fetch' mock.
* tests/cran.scm ("description->package"): Likewise.
Before that '.log' files for scheme tests were fragmented and not
included in test-suite.log. This unifies the semantics of SRFI-64 API
with Automake test suite.
* build-aux/test-driver.scm: New file.
* Makefile.am (SCM_LOG_DRIVER, AM_SCM_LOG_DRIVER_FLAGS): New variables.
(SCM_LOG_COMPILER, AM_SCM_LOG_FLAGS): Delete variables.
(AM_TESTS_ENVIRONMENT): Set GUILE_AUTO_COMPILE to 0.
* test-env.in: Silence guix-daemon.
* doc/guix.texi (Running the Test Suite): Describe how to display the
detailed results. Bug reports require only 'test-suite.log' file.
* tests/base32.scm, tests/build-utils.scm, tests/builders.scm,
tests/challenge.scm, tests/cpan.scm, tests/cpio.scm, tests/cran.scm,
tests/cve.scm, tests/derivations.scm, tests/elpa.scm,
tests/file-systems.scm, tests/gem.scm, tests/gexp.scm,
tests/gnu-maintenance.scm, tests/grafts.scm, tests/graph.scm,
tests/gremlin.scm, tests/hackage.scm, tests/hash.scm,
tests/import-utils.scm, tests/lint.scm, tests/monads.scm, tests/nar.scm,
tests/packages.scm, tests/pk-crypto.scm, tests/pki.scm,
tests/profiles.scm, tests/publish.scm, tests/pypi.scm,
tests/records.scm, tests/scripts-build.scm, tests/scripts.scm,
tests/services.scm, tests/sets.scm, tests/size.scm, tests/snix.scm,
tests/store.scm, tests/substitute.scm, tests/syscalls.scm,
tests/system.scm, tests/ui.scm, tests/union.scm, tests/upstream.scm,
tests/utils.scm: Don't exit at the end of test groups.
* tests/containers.scm: Likewise. Use 'test-skip' instead of exiting
with error code 77.
Fixes <http://bugs.gnu.org/22391>.
* tests/cran.scm (beautify-description: use double spacing,
beautify-description: transform fragment into sentence). Move
from here ...
* tests/import-utils.scm: ... to here. New file.
* Makefile.am (SCM_TESTS): Add import-utils.
* guix/import/cran.scm (%bioconductor-updater,
latest-bioconductor-release, bioconductor-package?): New procedures.
(cran->guix-package): Support repositories other than CRAN.
(%bioconductor-url, %bioconductor-svn-url): New variables.
(description->package): Update signature to distinguish between packages
from different repositories.
(latest-release): Rename procedure ...
(latest-cran-release): ... to this.
(cran-package?): Do not assume all R packages are available on CRAN.
* tests/cran.scm: Update tests.
* guix/scripts/import/cran.scm: Add "--archive" option and default to
CRAN.
* guix/scripts/refresh.scm (%updaters): Add "%bioconductor-updater".
* doc/guix.texi: Document Bioconductor importer and updater.
Mathieu Othacehe