Commit Graph

21628 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice fb5569b0c8
gnu: man-pages: Update to 4.14.
* gnu/packages/man.scm (man-pages): Update to 4.14.
2017-12-01 15:03:12 +01:00
Mathieu Othacehe 00e39b2ea4
system: vm: Do not add EFI partition on ARM system.
* gnu/system/vm.scm (qemu-img): Do not add EFI partition if we are targetting
  ARM.

UEFI support on u-boot is still experimental, so do not add EFI partition on
ARM for now.
2017-12-01 13:55:49 +01:00
Dave Love f1de0e37d5
gnu: openfoam: Clean up to reduce closure.
This saves ~1GB.

* gnu/packages/simulation.scm (openfoam)[outputs]: Add debug.
[arguments]: Clean up .o and src after build.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
ng0 6101cad4d1
gnu: Add geomyidae.
* gnu/packages/web.scm (geomyidae): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
Mike Gerwitz 491cbd3553
gnu: Add emacs-evil-matchit.
* gnu/packages/emacs.scm (emacs-evil-matchit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-01 11:28:48 +01:00
Ludovic Courtès c03ba83c17
gnu: git: Run tests sequentially.
Fixes <https://bugs.gnu.org/29512>.
Reported by George myglc2 Clemmer <myglc2@gmail.com>.

* gnu/packages/version-control.scm (git)[arguments]: Add
 #:parallel-tests?.
2017-12-01 11:28:48 +01:00
Ludovic Courtès f8446df663
gnu: elogind: Remove "uaccess" tag usage in "seat-late" rules.
* gnu/packages/freedesktop.scm (elogind)[arguments]: Add
'remove-uaccess-tag' phase.
2017-12-01 11:28:48 +01:00
Mark H Weaver 1776d5cd18
gnu: linux-libre: Update to 4.14.3.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.3.
(%linux-libre-hash): Update hash.
2017-12-01 01:37:08 -05:00
Mark H Weaver 6850c9ced5
gnu: linux-libre@4.9: Update to 4.9.66.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.66.
2017-12-01 01:36:21 -05:00
Mark H Weaver 8b8600022c
gnu: linux-libre@4.4: Update to 4.4.103.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.103.
2017-12-01 01:35:44 -05:00
Leo Famulari 2fc4709368
gnu: libtiff: Update to 4.0.9.
* gnu/packages/image.scm (libtiff): Update to 4.0.9.
[source]: Remove obsolete patches.
* gnu/packages/patches/libtiff-CVE-2016-10688.patch,
gnu/packages/patches/libtiff-CVE-2017-9936.patch,
gnu/packages/patches/libtiff-tiffgetfield-bugs.patch,
gnu/packages/patches/libtiff-tiffycbcrtorgb-integer-overflow.patch,
gnu/packages/patches/libtiff-tiffycbcrtorgbinit-integer-overflow.patch: Delete
files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-11-30 16:35:44 -05:00
Rutger Helling 34a28c13f5
gnu: qemu: Enable seccomp support.
* gnu/packages/virtualization.scm (qemu)[inputs]: Add libseccomp.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
ng0 e33904336f
gnu: fish-guix: Update to 0.1.2.1.
* gnu/packages/shells.scm (fish-guix): Update to 0.1.2.1.
(license): Switch to bsd-3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
Ludovic Courtès f00515b483
vm: Filter out file systems that refer to UUIDs or labels.
* gnu/system/vm.scm (virtualized-operating-system)[user-file-systems]:
Filter out things that refer to file system UUIDs or labels.
2017-11-30 18:14:57 +01:00
Vasile Dumitrascu 1d0865c19a
gnu: monero-core: Fix missing dependency.
* gnu/packages/finance.scm (monero-core)[inputs]: Add readline.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:57 +01:00
Mike Gerwitz 1d752e4345
gnu: Add xautolock.
* gnu/packages/xdisorg.scm (xautolock): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-30 18:14:56 +01:00
Ricardo Wurmus 117d8cc40e
gnu: jellyfish: Update to 2.2.7.
* gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7.
[native-inputs]: Add pkg-config.
[inputs]: Add htslib.
2017-11-30 17:38:36 +01:00
Ricardo Wurmus f1b90a2b58
gnu: r-bigmemory: Update to 4.5.31.
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31.
[propagated-inputs]: Remove r-r-utils.
2017-11-30 17:28:27 +01:00
Ricardo Wurmus b50a4b1391
gnu: r-cowplot: Update to 0.9.1.
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1.
[propagated-inputs]: Add r-scales.
2017-11-30 17:28:27 +01:00
Ricardo Wurmus a3ae2fa537
gnu: r-rcppprogress: Update to 0.4.
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.
[propagated-inputs]: Add r-devtools.
2017-11-30 17:28:26 +01:00
Ricardo Wurmus 0382d37734
gnu: r-rmarkdown: Update to 1.8.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8.
[propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
2017-11-30 17:28:26 +01:00
Ricardo Wurmus e35cac9581
gnu: r-batchjobs: Update to 1.7.
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
2017-11-30 17:28:25 +01:00
Ricardo Wurmus 05fd8e6b46
gnu: r-pracma: Update to 2.1.1.
* gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
2017-11-30 17:28:24 +01:00
Ricardo Wurmus 9b8d02011f
gnu: r-annotationhub: Update to 2.10.1.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
2017-11-30 17:28:24 +01:00
Ricardo Wurmus 87e91a9fff
gnu: r-msnid: Update to 1.12.1.
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
2017-11-30 17:28:23 +01:00
Ricardo Wurmus 439492654b
gnu: r-maldiquant: Update to 1.17.
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
2017-11-30 17:28:23 +01:00
Ricardo Wurmus 06e8e0fc6c
gnu: r-genomicalignments: Update to 1.14.1.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
2017-11-30 17:28:22 +01:00
Ricardo Wurmus 1ce5d32b49
gnu: r-limma: Update to 3.34.2.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
2017-11-30 17:28:22 +01:00
Ricardo Wurmus 8131cf4162
gnu: r-variantannotation: Update to 1.24.2.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
2017-11-30 17:28:21 +01:00
Ricardo Wurmus d2081a17ed
gnu: r-getopt: Update to 1.20.1.
* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
2017-11-30 17:28:20 +01:00
Ricardo Wurmus 4220ab0c81
gnu: r-gseabase: Update to 1.40.1.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
2017-11-30 17:28:20 +01:00
Ricardo Wurmus d259932ca8
gnu: r-dexseq: Update to 1.24.1.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
2017-11-30 17:28:19 +01:00
Ricardo Wurmus 058644c0f2
gnu: r-deseq2: Update to 1.18.1.
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
2017-11-30 17:28:18 +01:00
Ricardo Wurmus 654c29aceb
gnu: r-annotate: Update to 1.56.1.
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
2017-11-30 17:28:18 +01:00
Ricardo Wurmus 814fd32670
gnu: r-circlize: Update to 0.4.2.
* gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
2017-11-30 17:28:17 +01:00
Ricardo Wurmus d76f987c42
gnu: r-rcpp: Update to 0.12.14.
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
2017-11-30 17:28:17 +01:00
Ricardo Wurmus 26007cd5ee
gnu: r-timedate: Update to 3042.101.
* gnu/packages/cran.scm (r-timedate): Update to 3042.101.
2017-11-30 17:28:16 +01:00
Ricardo Wurmus 87313f64d9
gnu: r-stringi: Update to 1.1.6.
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
2017-11-30 17:28:16 +01:00
Ricardo Wurmus 3e11bddcc7
gnu: r-devtools: Update to 1.13.4.
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
2017-11-30 17:28:15 +01:00
Ricardo Wurmus 20b0f8a5ec
gnu: r-mclust: Update to 5.4.
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
2017-11-30 17:28:15 +01:00
Ricardo Wurmus 6d4aed8d98
gnu: r-rcppeigen: Update to 0.3.3.3.1.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
2017-11-30 17:28:14 +01:00
Ricardo Wurmus a0a3184925
gnu: r-car: Update to 2.1-6.
* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
2017-11-30 17:28:14 +01:00
Ricardo Wurmus c8fb593502
gnu: r-sn: Update to 1.5-1.
* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
2017-11-30 17:28:13 +01:00
Ricardo Wurmus b796f9e6be
gnu: r-openssl: Update to 0.9.9.
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
2017-11-30 17:28:13 +01:00
Ricardo Wurmus 09c0107f75
gnu: r-hms: Update to 0.4.0.
* gnu/packages/statistics.scm (r-hms): Update to 0.4.0.
[propagated-inputs]: Add r-rlang and r-pkgconfig.
2017-11-30 17:28:12 +01:00
Ricardo Wurmus 6c84c735a5
gnu: r-dendextend: Update to 1.6.0.
* gnu/packages/cran.scm (r-dendextend): Update to 1.6.0.
2017-11-30 17:28:12 +01:00
Ricardo Wurmus 18a11c6d62
gnu: r-recipes: Update to 0.1.1.
* gnu/packages/cran.scm (r-recipes): Update to 0.1.1.
[propagated-inputs]: Add r-broom and r-matrix.
2017-11-30 17:28:11 +01:00
Ricardo Wurmus 6c8c8c6b75
gnu: Add r-broom.
* gnu/packages/cran.scm (r-broom): New variable.
2017-11-30 17:28:10 +01:00
Ricardo Wurmus cdc129dc53
gnu: Add r-psych.
* gnu/packages/cran.scm (r-psych): New variable.
2017-11-30 17:28:10 +01:00
Arun Isaac 6e385b76e6
gnu: mongodb: Use scons-build-system.
* gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
2017-11-30 18:21:23 +05:30
Arun Isaac bc27eb3b56
gnu: klick: Use scons-build-system.
* gnu/packages/music.scm (klick): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
Arun Isaac 3f3f8f494e
gnu: pingus: Use scons-build-system.
* gnu/packages/games.scm (pingus): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
Arun Isaac 92b51d127f
gnu: godot: Use scons-build-system.
* gnu/packages/game-development.scm (godot): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
Arun Isaac 9364a520ce
gnu: metabat: Use scons-build-system.
* gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
Arun Isaac 82cc8253de
gnu: serf: Use scons-build-system.
* gnu/packages/web.scm (serf): Switch to scons-build-system.
2017-11-30 18:19:32 +05:30
Arun Isaac 2235abb2a2
gnu: gpick: Use scons-build-system.
* gnu/packages/image.scm (gpick): Switch to scons-build-system.
2017-11-30 18:19:31 +05:30
Arun Isaac 2b1a5ed854
gnu: linuxdcpp: Use scons-build-system.
* gnu/packages/direct-connect.scm (linuxdcpp): Switch to scons-build-system.
2017-11-30 18:19:31 +05:30
Arun Isaac bf630276a1
gnu: scons: Update to 3.0.1.
* gnu/packages/python.scm (scons): Update to 3.0.1.
(scons-python2): New variable.
2017-11-30 18:18:47 +05:30
Mathieu Othacehe c5b2905d92
gnu: dtc: Fix build on 32 bits platforms.
* gnu/packages/bootloaders.scm (dtc)[patches]: Add dtc-32-bits-check.patch and
  dtc-format-modifier.patch to fix build and tests on 32 bits platforms.
* gnu/packages/patches/dtc-32-bits-check.patch : New file.
* gnu/packages/patches/dtc-format-modifier.patch : New file.
* gnu/local.mk (dist_patch_DATA): Add two above patches.
2017-11-30 13:32:28 +01:00
Roel Janssen 8937abefb2
gnu: Update r-matrix to 1.2-12.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
2017-11-30 12:52:25 +01:00
Roel Janssen c71558ffed
gnu: Update r-cluster to 2.0.6.
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-11-30 12:51:54 +01:00
Roel Janssen cbe1314a7e
gnu: Update r-minimal to 3.4.3.
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.3.
2017-11-30 12:50:23 +01:00
Ludovic Courtès 8833a647bb
gnu: guix: Move 'bootstrap' phase after 'unpack'.
Suggested by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00389.html>.

* gnu/packages/package-management.scm (guix)[arguments]: Move
'bootstrap' phase back after 'unpack'.
2017-11-30 11:14:34 +01:00
Efraim Flashner 46ff2dbb4a
gnu: grub-efi: Disable tests on all platforms.
This is a follow-up to 56f0feb678
and 63087721bb, which accidentally
enabled tests for grub-efi on other platforms.

* gnu/packages/bootloaders.scm (grub-efi)[arguments]: Override inherited
tests field and disable on all platforms.
2017-11-30 10:17:09 +02:00
Tobias Geerinckx-Rice 3e9013562c
gnu: exim: Update to 4.89.1.
* gnu/packages/mail.scm (exim): Update to 4.89.1.
[source]: Remove patches for fixed CVEs (all of them).
* gnu/packages/patches/exim-CVE-2017-16943.patch: Delete file...
* gnu/packages/patches/exim-CVE-2017-16944.patch: ...as well as this file...
* gnu/packages/patches/exim-CVE-2017-1000369.patch: ...and this file.
* gnu/local.mk (dist_patch_DATA): Remove all of them.
2017-11-30 02:29:09 +01:00
Ludovic Courtès 53d26163c6
gnu: libgit2: Avoid dependency on cURL.
This reduces the closure size from 225 MiB to 80 MiB, while still
supporting HTTP(S) access.

* gnu/packages/version-control.scm (libgit2)[source](modules, snippet):
New fields.
[inputs]: Remove CURL; add HTTP-PARSER.
2017-11-29 23:40:39 +01:00
Tobias Geerinckx-Rice 32008a75dc
gnu: spectrwm: Fix description.
* gnu/packages/wm.scm (spectrwm)[description]: Fix typo and use @dfn.
2017-11-29 22:03:24 +01:00
Tobias Geerinckx-Rice ead48d0523
gnu: ghc-happy: Update to 1.19.8.
* gnu/packages/haskell.scm (ghc-happy): Update to 1.19.8.
[arguments]: Delete; run all tests.
2017-11-29 22:02:42 +01:00
Leo Famulari e6e8352382
gnu: curl: Update to 7.57.0 [fixes CVE-2017-{8816,8817,8818}].
* gnu/packages/curl.scm (curl): Update replacement to 7.57.0.
(curl-7.56.1): Replace with ...
(curl-7.57.0): ... new variable.
2017-11-29 14:38:51 -05:00
Leo Famulari 2c646b7d52
gnu: libtorrent-rasterbar: Update to 1.1.5.
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.5.
2017-11-29 14:38:47 -05:00
Efraim Flashner 63087721bb
gnu: grub :Disable tests on aarch64.
* gnu/packages/bootloaders.scm (grub)[arguments]: Add aarch64 to the
architectures where the test suite is not run.
2017-11-29 20:34:29 +02:00
Ludovic Courtès 15c2ddc124
vm: ISO9660 images include /etc and other standard files.
* gnu/build/vm.scm (make-iso9660-image): Call
'populate-root-file-system' instead of a series of 'mkdir-p' calls.  Add
/etc to the arguments of xorriso.
2017-11-29 16:44:53 +01:00
Ludovic Courtès 748d4a84d1
linux-boot: Ensure /etc exists on the root file system.
Fixes a regression introduced in
c828969036 whereby /etc would no longer be
created as a result of calling 'mark-as-not-killable'.

This would affect ISO images because 'make-iso9660-image' does not
create /etc by default.  In particular, the ISO installation image as
created by the "iso-image-installer" test would fail to boot while
creating the /root/etc/mtab symlink:
<https://hydra.gnu.org/build/2352514/nixlog/9/raw>.

* gnu/build/linux-boot.scm (mount-root-file-system): Make sure /root/etc
exists.
2017-11-29 16:44:53 +01:00
Tobias Geerinckx-Rice a6d06e8612
gnu: openconnect: Use only vpnc-scripts.
* gnu/packages/vpn.scm (openconnect)[inputs, arguments]: Substitute
‘vpnc-scripts’ for ‘vpnc’
2017-11-29 16:08:36 +01:00
Tobias Geerinckx-Rice 101e67ac20
gnu: vpnc: Use newer vpnc-scripts.
* gnu/packages/vpn.scm (vpnc)[source]: Remove patch.
[inputs]: Remove net-tools and iproute2.  Add vpnc-scripts.
[arguments]: Delete ‘configure’ and ‘wrap-vpnc-script’ #:phases.
Add ‘use-store-paths’ phase.
* gnu/packages/patches/vpnc-script.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-29 16:08:36 +01:00
Tobias Geerinckx-Rice 06d91fd944
gnu: Add vpnc-scripts.
* gnu/packages/vpn.scm (vpnc-scripts): New variable.
2017-11-29 16:08:36 +01:00
Mathieu Othacehe 56f0feb678
gnu: grub: Disable tests on ARM platforms.
* gnu/packages/bootloaders (grub): Disable tests on ARM platforms.
Half of the tests are failing on ARM.
2017-11-29 15:00:55 +01:00
Roel Janssen 1fd904fb38
gnu: Update r-mutationalpatterns to 1.4.1.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.1.
2017-11-29 14:56:28 +01:00
Tobias Geerinckx-Rice 60c8a14b8a
gnu: ghc-tasty-rerun: Update to 1.1.7.
* gnu/packages/haskell-check.scm (ghc-tasty-rerun): Update to 1.1.7.
2017-11-29 13:42:06 +01:00
Tobias Geerinckx-Rice d5feb0920e
gnu: limnoria: Update to 2017.10.01.
* gnu/packages/irc.scm (limnoria): Update to 2017.10.01.
2017-11-29 13:38:31 +01:00
Marius Bakke b3e53aae08
gnu: libxfont@1: Update to 1.5.4 [fixes CVE-2017-16611].
* gnu/packages/xorg.scm (libxfont): Update to 1.5.4.
2017-11-29 12:53:08 +01:00
Marius Bakke 1ec0b7407f
gnu: libxfont@2: Update replacement to 2.0.3 [fixes CVE-2017-16611].
* gnu/packages/xorg.scm (libxfont2/fixed): Rename to ...
(libxfont2-2.0.3): ... this.  Make public.
[version]: New field.
[source]: Add URI and SHA256.  Remove patches.
(libxfont2)[replacement]: Change LIBXFONT2/FIXED to LIBXFONT2-2.0.3.
* gnu/packages/patches/libxfont-CVE-2017-13720.patch,
gnu/packages/patches/libxfont-CVE-2017-13722.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-11-29 12:53:08 +01:00
Marius Bakke 4fc61dac3c
gnu: libxcursor: Replace with 1.1.15 [fixes CVE-2017-16612].
* gnu/packages/xorg.scm (libxcursor-1.1.15): New public variable.
(libxcursor)[replacement]: New field.
2017-11-29 12:53:08 +01:00
Marius Bakke 0e7fb0cd9b
gnu: optipng: Fix CVE-2017-1000229.
* gnu/packages/image.scm (optipng)[source](patches): New field.
* gnu/packages/patches/optipng-CVE-2017-1000229.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-11-29 12:53:08 +01:00
Roel Janssen efa6a1ddb5
gnu: Add r-copynumber.
* gnu/packages/bioinformatics.scm (r-copynumber): New variable.
2017-11-29 12:46:17 +01:00
Roel Janssen 94989d4bae
gnu: cran: Add r-rmpi.
* gnu/packages/cran.scm (r-rmpi): New variable.
2017-11-29 12:15:33 +01:00
Leo Famulari 3519f2841d
gnu: libtorrent-rasterbar: Update to 1.1.4.
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.4.
[source]: Remove 'libtorrent-rasterbar-boost-compat.patch'.
* gnu/packages/patches/libtorrent-rasterbar-boost-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-29 01:12:18 -05:00
Ben Sturmfels d2bdee8a69
gnu: synergy: Fix install test/install error.
* gnu/packages/synergy.scm (synergy)[arguments]: Adjust the build directory in
accordance with the package's new upstream name.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 18:26:20 -05:00
Leo Famulari 48adc61c14
gnu: exim: Fix CVE-2017-16944.
* gnu/packages/patches/exim-CVE-2017-16944.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (exim)[source]: Use it.
2017-11-28 18:22:49 -05:00
Leo Famulari 38faa2b546
gnu: qemu: Fix CVE-2017-{15118,15119}.
* gnu/packages/patches/qemu-CVE-2017-15118.patch,
gnu/packages/patches/qemu-CVE-2017-15119.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
2017-11-28 18:16:22 -05:00
Ludovic Courtès 3af03e5967
services: certbot: Add default value and description.
* gnu/services/certbot.scm (certbot-service-type)
[default-value, description]: New fields.
* po/packages/POTFILES.in: Add it.
2017-11-28 23:34:25 +01:00
Ludovic Courtès a222b734b3
services: cgit, git-daemon: Add description and default value.
* gnu/services/version-control.scm (git-daemon-service-type)
[description, default-value]: New fields.
(cgit-service-type)[default-value]: New field.
* po/packages/POTFILES.in: Add version-control.scm.
2017-11-28 23:34:25 +01:00
Ludovic Courtès 87dad874c9
tests: Add 'git-http' test.
* gnu/tests/version-control.scm (%git-nginx-configuration)
(%git-http-os, %test-git-http): New variables.
(run-git-http-test): New procedure.
2017-11-28 23:34:25 +01:00
Ludovic Courtès e755692bc1
tests: cgit: Add a file to the test repository.
* gnu/tests/version-control.scm (README-contents): New variable.
(%make-git-repository): Add a 'README' file to the repo.
(%test-repository-service): New variable.
(%cgit-os): Use it.
(run-cgit-test): Test /test/tree/README and /test/tree/does-not-exist.
2017-11-28 23:34:25 +01:00
Andy Wingo 410349347a
services: Add Git HTTP(S) service support.
* doc/guix.texi (Version Control Services): Add documentation on the HTTP
backend for git.
* gnu/services/version-control.scm (<git-http-configuration>): New data type.
(git-http-nginx-location-configuration): New helper function.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 23:34:25 +01:00
Andy Wingo 1115f14017
services: Add certbot service.
* gnu/services/certbot.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
* doc/guix.texi (Certificate Services): New section.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 23:34:24 +01:00
Ludovic Courtès f612992999
build: Add missing patch.
This is a followup to 797d238789.

* gnu/local.mk (dist_patch_DATA): Add
'node-test-http2-server-rst-stream.patch'.
2017-11-28 23:34:24 +01:00
ng0 20d2c6e749
gnu: Add nototools.
* gnu/packages/fontutils.scm (nototools): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:55:13 -05:00
ng0 3715aff59b
gnu: Add python2-defcon.
* gnu/packages/fontutils.scm (python2-defcon): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:52:58 -05:00
ng0 76040f71f1
gnu: Add python2-booleanoperations.
* gnu/packages/python.scm (python2-booleanoperations): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:51:45 -05:00
ng0 a39211febd
gnu: Add python-pyclipper.
* gnu/packages/python.scm (python-pyclipper, python2-pyclipper): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:49:08 -05:00
ng0 9b3c7520eb
gnu: Add python-setuptools-scm-git-archive.
* gnu/packages/python.scm (python-setuptools-scm-git-archive,
python2-setuptools-scm-git-archive): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:49:07 -05:00
ng0 427a51fd8f
gnu: Add python2-ufolib.
* gnu/packages/fontutils.scm (python2-ufolib): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:40:43 -05:00
ng0 0ee27df06b
gnu: add font-fira-sans.
* gnu/packages/fonts.scm (font-fira-sans): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:26:20 -05:00
ng0 4eb4742060
gnu: Add font-lato.
* gnu/packages/fonts.scm (font-lato): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:22:28 -05:00
ng0 27a1077580
gnu: Add font-dosis.
* gnu/packages/fonts.scm (font-dosis): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 14:18:25 -05:00
Leo Famulari 4440e40c6a
gnu: zsh: Update to 5.4.2.
* gnu/packages/shells.scm (zsh): Update to 5.4.2.
[arguments]: Add a 'patch-test' build phase.
2017-11-28 13:52:36 -05:00
Rutger Helling fbf5ca3c5e
gnu: libressl: Update to 2.6.3.
* gnu/packages/tls.scm (libressl): Update to 2.6.3.
2017-11-28 13:50:04 -05:00
Rutger Helling 142535c3c2
gnu: you-get: Update to 0.4.985.
* gnu/packages/video.scm (you-get): Update to 0.4.985.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-28 13:50:03 -05:00
Oleg Pykhalov 2cdf78df2d
gnu: python-internetarchive: Enable tests.
* gnu/packages/web.scm (python-internetarchive): Enable tests.
2017-11-28 20:23:46 +03:00
Oleg Pykhalov 25fa22a99b
gnu: python-internetarchive: Update to 1.7.4.
* gnu/packages/web.scm (python-internetarchive): Update to 1.7.4.
2017-11-28 20:23:46 +03:00
Ludovic Courtès e463a94ce7
gnu: guix: Update snapshot to 0a154c1.
* gnu/packages/package-management.scm (guix): Update to commit 0a154c1.
2017-11-28 18:17:45 +01:00
Oleg Pykhalov a6d02fc168
gnu: Add eless.
* gnu/packages/emacs.scm (eless): New variable.
2017-11-28 20:13:48 +03:00
Kei Kebreau 07f3b3794c
gnu: Add roguebox-adventures.
* gnu/packages/games.scm (roguebox-adventures): New variable.
2017-11-28 09:54:13 -05:00
Ludovic Courtès 1da3d2a3a1
gnu: perl-markdown-discount: Use a shorter patch file name.
* gnu/packages/patches/perl-text-markdown-discount-use-system-markdown.patch:
Rename to...
* gnu/packages/patches/perl-text-markdown-discount-unbundle.patch:
... this.
* gnu/packages/markup.scm (perl-text-markdown-discount): Adjust accordingly.
2017-11-28 14:57:16 +01:00
Marius Bakke ee3ebf1a35
gnu: glibc: Update to 2.26-91-gaaa2eb83b8.
* gnu/packages/base.scm (glibc/linux): Update to 2.26-91-gaaa2eb83b8.
[source](uri): Download from alpha.gnu.org.
[source](patches): Remove glibc-CVE-2017-15670-15671.patch.
2017-11-28 14:24:09 +01:00
Marius Bakke 98a1c480b3
gnu: harfbuzz: Update to 1.7.1.
* gnu/packages/gtk.scm (harfbuzz): Update to 1.7.1.
2017-11-28 14:24:09 +01:00
Marius Bakke 8dd35a0e20
gnu: pango: Update to 1.40.14.
* gnu/packages/gtk.scm (pango): Update to 1.40.14.
2017-11-28 14:24:09 +01:00
Marius Bakke 1be8a43245
gnu: libatomic-ops: Update to 7.4.8.
* gnu/packages/bdw-gc.scm (libatomic-ops): Update to 7.4.8.
[source](uri): Newer releases are only available on GitHub.
2017-11-28 14:24:09 +01:00
Marius Bakke 16cc6a9d12
gnu: libxslt: Update to 1.1.32.
* gnu/packages/xml.scm (libxslt): Update to 1.1.32.
2017-11-28 14:24:09 +01:00
Marius Bakke 9401318685
gnu: libxml2: Update to 2.9.7.
* gnu/packages/xml.scm (libxml2): Update to 2.9.7.
2017-11-28 14:24:09 +01:00
Marius Bakke 3a0b4038f0
gnu: dbus: Update to 1.12.2.
* gnu/packages/glib.scm (dbus): Update to 1.12.2.
2017-11-28 14:24:09 +01:00
Marius Bakke 4c00229661
gnu: libdrm: Update to 2.4.88.
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.88.
2017-11-28 14:24:08 +01:00
Marius Bakke 6198d34e0d
gnu: libxfont2: Update to 2.0.2.
* gnu/packages/xorg.scm (libxfont2): Update to 2.0.2.
[source](patches): Remove.
* gnu/packages/patches/libxfont-CVE-2017-13720.patch,
gnu/packages/patches/libxfont-CVE-2017-13722.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-11-28 14:24:08 +01:00
Marius Bakke 61bed15707
gnu: libuv: Use 'modify-phases' syntax.
* gnu/packages/libevent.scm (libuv)[arguments]<#:phases>: Use 'modify-phases'.
2017-11-28 14:24:08 +01:00
Marius Bakke 48a064a379
gnu: libuv: Update to 1.16.1.
* gnu/packages/libevent.scm (libuv): Update to 0.16.1.
2017-11-28 14:24:08 +01:00
Marius Bakke dfdf8d7477
gnu: check: Update to 0.12.0.
* gnu/packages/check.scm (check): Update to 0.12.0.
[source](uri): Update to new release URL.
(check-0.11.0): Remove variable.
* gnu/packages/xdisorg.scm (rofi)[native-inputs]: Replace CHECK-0.11.0 with CHECK.
2017-11-28 14:24:08 +01:00
Marius Bakke 667082d591
gnu: ncurses: Update to 6.0-20170930.
* gnu/packages/ncurses.scm (ncurses): Update to 6.0-20170930.
[source](patches): Remove.
[source](uri): Adjust to version suffix.
[arguments]: Add 'apply-rollup-patch' phase.
[native-inputs]: Add a "rollup-patch" origin.
* gnu/packages/patches/ncurses-CVE-2017-10684-10685.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-28 14:24:08 +01:00
Ludovic Courtès dd1640eed6
gnu: guix: Add guile-bytestructures to the search path.
* gnu/packages/package-management.scm (guix)[arguments]: In
'wrap-program' phase, add guile-bytestructures to the path.
2017-11-28 13:29:47 +01:00
Ludovic Courtès 91c619ebdf
gnu: guix: Provide the correct version string.
Fixes <https://bugs.gnu.org/29429>.
Reported by Arun Isaac <arunisaac@systemreboot.net>.

* gnu/packages/package-management.scm (guix)[arguments]: Move
'bootstrap' phase before 'configure'.  Create '.tarball-version' file.
2017-11-28 13:25:04 +01:00
Ludovic Courtès 65c0f43649
services: xorg: Remove WindowMaker as a default fallback.
* gnu/services/xorg.scm (xinitrc)[builder](system-profile)
(user-profile): New variables.
(xsession-command, find-session): New procedures.
When FALLBACK-SESSION is #f, find a valid session at run time.
* doc/guix.texi (X Window): Adjust accordingly, and insist that one
or more window managers must be installed.
2017-11-28 11:24:46 +01:00
Ludovic Courtès b37f86d7a3
services: xorg: Document 'slim-configuration' and deprecate 'slim-service'.
* gnu/services/xorg.scm (<slim-configuration>): Provide default values
for all fields.
(slim-service-type)[default-value]: New field.
* doc/guix.texi (X Window): Remove 'slim-service' documentation.
Document 'slim-service-type' and 'slim-configuration'.
* gnu/services/desktop.scm (%desktop-services): Use 'slim-service-type'.
2017-11-28 11:24:45 +01:00
Ludovic Courtès 94b9abd942
services: slim: Remove unused 'bash' configuration field.
* gnu/services/xorg.scm (<slim-configuration>)[bash]: Remove.
(slim-service): Adjust accordingly.
2017-11-28 11:14:25 +01:00
Ludovic Courtès d344f5a528
services: xorg: Allow users to specify a list of modules.
* gnu/services/xorg.scm (%default-xorg-fonts): New variable.
(xorg-configuration-file): Add #:modules and #:fonts.  Rewrite to return
a 'computed-file' that honors MODULES and FONTS.
(xorg-wrapper): Pass #:modules to 'xorg-configuration-file'.
(xorg-start-command): Add #:fonts.  Pass #:fonts and #:modules to
'xorg-configuration-file'.
* doc/guix.texi (X Window): Adjust documentation of 'xorg-start-command'
and 'xorg-configuration-file'.
2017-11-28 10:46:03 +01:00
Brendan Tildesley 04c3573726
gnu: xdg-utils: Add perl-file-mimeinfo as an input.
* gnu/packages/freedesktop.scm (perl-file-mimeinfo)
[input]: Add perl-file-mimeinfo.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 10:41:22 +01:00
Brendan Tildesley d0ce96bc17
gnu: Add perl-file-mimeinfo.
* gnu/packages/freedesktop.scm (perl-file-mimeinfo): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 10:40:45 +01:00
Brendan Tildesley 825cebdb33
gnu: Add perl-file-desktopentry.
* gnu/packages/freedesktop.scm (perl-file-desktopentry): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 10:35:29 +01:00
Brendan Tildesley b32596ecfc
gnu: Add perl-file-basedir.
* gnu/packages/freedesktop.scm: (perl-file-basedir): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 10:33:59 +01:00
Mike Gerwitz 797d238789
gnu: node: Update to 8.9.1.
* gnu/packages/node.scm (node): Update to 8.9.1.
[source]: Apply 'node-test-http2-server-rst-stream.patch'.
[arguments]: Skip 'doc-only' target in 'check', which attempts to use
npm to retrieve 'js-yaml' package.  Remove test/doctool/test-make-doc.js.
Do not remove now-missing test case.  Remove new test case that fails in
containers due to networking.
* gnu/packages/patches/node-test-http2-server-rst-stream.patch: New file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-28 10:04:26 +01:00
Efraim Flashner ff6dcc1ae9
gnu: libmicrohttpd: Update to 0.9.57.
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.57.
[description]: Fix line breaks.
2017-11-28 09:38:27 +02:00
Efraim Flashner 62028e9125
gnu: nano: Update to 2.9.1.
* gnu/packages/nano.scm (nano): Update to 2.9.1.
2017-11-28 09:38:24 +02:00
Clément Lassieur 769e715508
gnu: emacs-org-contrib: Fix sha256 checksum due to emacs-org update.
* gnu/packages/emacs.scm (emacs-org-contrib)[source]: Fix sha256 checksum.
2017-11-28 03:49:47 +01:00
Clément Lassieur 19ff1f2687
services: configuration: Show default values of list types.
* doc/guix.texi (Messaging Services): Regenerate it.
* gnu/services/configuration.scm (show-default?): Check VAL rather than DEFAULT.
* gnu/services/messaging.scm (show-default?): Check VAL rather than DEFAULT.
(prosody-configuration)[modules-enabled]: Remove default value from docstring.
2017-11-28 03:49:47 +01:00
Clément Lassieur 149b2c439e
gnu: lua-lpeg: Avoid code repetition.
* gnu/packages/lua.scm (make-lua-lpeg): New procedure.
(lua-lpeg, lua5.2-lpeg): Call make-lua-lpeg.
2017-11-28 03:49:47 +01:00
ng0 1aace3dc34
gnu: gnurl: Update to 7.56.1-2.
* gnu/packages/gnunet.scm (gnurl): Update to 7.56.1-2.
[arguments]: Adjust the #:configure-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-27 15:49:17 -05:00
Efraim Flashner aad2dbfb6c
gnu: Add vim-fugitive.
* gnu/packages/vim.scm (vim-fugitive): New variable.
2017-11-27 22:26:17 +02:00
Efraim Flashner b200ecdeb2
gnu: Add gama.
* gnu/packages/gps.scm (gama): New variable.
2017-11-27 22:18:27 +02:00
Christopher Baines 03800de180
gnu: Patch udisks to directly reference cryptsetup and parted.
This fixes some functionality in gnome-disks, which uses udisks. Adding
cryptsetup enables creating partitions using LUKS, and adding parted enables
editing the partition tables through the disks application.

* gnu/packages/freedesktop.scm (udisks)[inputs]: Add cryptsetup and parted.
  (arguments): Rename set-mount-file-name phase, and add cryptsetup and
  parted.
2017-11-27 19:41:17 +00:00
Christopher Baines 5823396404
services: desktop: Create /var/run/udisks2 for the udisks service.
* gnu/services/desktop.scm (%udisks-activation): New variable.
  (udisks-service-type)[extensions]: Extend the activation service type with
  %udisks-activation.
2017-11-27 19:41:13 +00:00
Leo Famulari 080e023d45
gnu: openntpd: Enable use of TLS-based time constraints.
* gnu/packages/ntp.scm (openntpd)[inputs]: Add libressl.
2017-11-27 13:29:18 -05:00
Vasile Dumitrascu 12a130b011
gnu: monero-core: Update to 0.11.1.0.
* gnu/packages/finance.scm (monero-core): Update to 0.11.1.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-27 12:56:36 -05:00
Vasile Dumitrascu 14e09e9039
gnu: monero: Update to 0.11.1.0.
* gnu/packages/finance.scm (monero): Update to 0.11.1.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-27 12:56:33 -05:00
Tobias Geerinckx-Rice 7832785def
gnu: steghide: Fix description.
* gnu/packages/image.scm (steghide)[description]: Remove typos and improve
grammar.
2017-11-27 17:07:12 +01:00
Tobias Geerinckx-Rice 778c4a2fa1
gnu: rhythmbox: Update to 3.4.2.
* gnu/packages/gnome.scm (rhythmbox): Update to 3.4.2.
2017-11-27 17:06:26 +01:00
Tobias Geerinckx-Rice 47aba9ddc9
gnu: libgweather: Update to 3.26.1.
* gnu/packages/gnome.scm (libgweather): Update to 3.26.1.
2017-11-27 17:06:25 +01:00
Tobias Geerinckx-Rice ac25f5972d
gnu: glade@3: Update to 3.20.2.
* gnu/packages/gnome.scm (glade3): Update to 3.20.2.
2017-11-27 17:06:25 +01:00
Tobias Geerinckx-Rice 26ff9cb370
gnu: libzip: Run all tests.
* gnu/packages/compression.scm (libzip)[arguments]: Delete
‘remove-failing-stest’ phase.
2017-11-27 16:16:20 +01:00
Tobias Geerinckx-Rice 18533bcf2d
gnu: borg: Use new borgbackup.org home page.
* gnu/packages/backup.scm (borg)[home-page]: Update.
2017-11-27 14:12:25 +01:00
Tobias Geerinckx-Rice b46ea394a4
gnu: python-prompt-toolkit: Update to 1.0.15.
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.15.
2017-11-27 14:12:25 +01:00
Tobias Geerinckx-Rice 8fab029dbc
gnu: python-pyicu: Update home page.
* gnu/packages/python.scm (python-pyicu)[home-page]: Update.
2017-11-27 14:12:24 +01:00
Tobias Geerinckx-Rice d152d9338f
gnu: python-pyicu: Update to 1.9.8.
* gnu/packages/python.scm (python-pyicu): Update to 1.9.8.
[arguments]: Delete.
[native-inputs]: Add python-pytest and python-six.
2017-11-27 14:12:24 +01:00
Tobias Geerinckx-Rice 36c5cf758c
gnu: rapicorn: Update home page.
* gnu/packages/graphics.scm (rapicorn)[home-page]: Use extant domain.
2017-11-27 14:12:24 +01:00
Tobias Geerinckx-Rice 5f169014ec
gnu: borg: Update to 1.1.3 [fixes CVE-2017-15914].
* gnu/packages/backup.scm (borg): Update to 1.1.3.
[arguments]: Skip ‘test_mount_hardlinks’ test.
2017-11-27 14:12:23 +01:00
Tobias Geerinckx-Rice 216614a4b3
gnu: youtube-dl: Update to 2017.11.26.
* gnu/packages/video.scm (youtube-dl): Update to 2017.11.26.
2017-11-27 14:12:23 +01:00
Ludovic Courtès e8374e6912
gnu: guile-wisp: Move .go files to 'lib/guile/2.2/site-ccache'.
* gnu/packages/guile.scm (guile-wisp)[arguments]: Remove (system base
compile) from #:modules, and (ice-9 rdelim) and (ice-9 popen).
In 'install-go-files' phase, invoke 'guild' to compile, and write to
lib/guile/X.Y/site-ccache.
2017-11-27 14:06:27 +01:00
Ludovic Courtès 89c4bfe7f8
gnu: guile-wisp: Switch to Guile 2.2.
* gnu/packages/guile.scm (guile-wisp)[inputs]: Use GUILE-2.2 instead of
GUILE-2.0.
2017-11-27 14:05:58 +01:00
Ludovic Courtès e084090554
gnu: guile-wisp: Update to 0.9.8.
* gnu/packages/guile.scm (guile-wisp): Update to 0.9.8.
[inputs]: Remove PYTHON.
[native-inputs]: New field.
[arguments]: Keep 'install' phase.  Add 'install-go-files' phase.
Adjust 'substitute-before-config' phase.
2017-11-27 14:05:58 +01:00
Ricardo Wurmus 776d2fb1bf
gnu: Add java-jbzip2.
* gnu/packages/compression.scm (java-jbzip2): New variable.
2017-11-27 12:12:41 +01:00
Ricardo Wurmus d7f24778de
gnu: Add java-picard-1.113.
* gnu/packages/bioinformatics.scm (java-picard-1.113): New variable.
2017-11-27 12:12:41 +01:00
Ricardo Wurmus fa6c4213c6
gnu: Add ant-junit.
* gnu/packages/java.scm (ant-junit): New variable.
2017-11-27 12:12:41 +01:00
Ricardo Wurmus 9ce7ac992e
gnu: Add ant-apache-bcel.
* gnu/packages/java.scm (ant-apache-bcel): New variable.
2017-11-27 12:12:41 +01:00
Ricardo Wurmus 5e3abfc83f
gnu: Add java-commons-bcel.
* gnu/packages/java.scm (java-commons-bcel): New variable.
2017-11-27 12:12:41 +01:00
Ricardo Wurmus c5ff11dcc1
gnu: Add java-cofoja.
* gnu/packages/java.scm (java-cofoja): New variable.
2017-11-27 12:12:40 +01:00
Ricardo Wurmus d7fed31ad2
gnu: Add java-picard.
* gnu/packages/bioinformatics.scm (java-picard): New variable.
2017-11-27 12:12:40 +01:00
Ricardo Wurmus bd94b6f850
gnu: java-htsjdk: Update to 2.3.0.
* gnu/packages/bioinformatics.scm (java-htsjdk): Update to 2.3.0.
[arguments]: Build with JDK 8.
[inputs]: Add java-ngs, java-snappy, java-commons-compress,
java-commons-logging-minimal, java-commons-jexl-2, and java-xz.
[native-inputs]: Add java-testng.
2017-11-27 12:12:40 +01:00
Ricardo Wurmus 9e325e8c05
gnu: Add java-commons-jexl-2.
* gnu/packages/java.scm (java-commons-jexl-2): New variable.
2017-11-27 12:12:40 +01:00
Ricardo Wurmus 6688c41e16
gnu: Add javacc-4.
* gnu/packages/java.scm (javacc-4): New variable.
2017-11-27 12:12:40 +01:00
Ricardo Wurmus fc8d100b24
gnu: Add javacc.
* gnu/packages/java.scm (javacc): New variable.
2017-11-27 12:12:40 +01:00
Ricardo Wurmus 933ad809f1
gnu: Add java-snappy-1.
* gnu/packages/compression.scm (java-snappy-1): New variable.
2017-11-27 12:12:39 +01:00
Ricardo Wurmus 9cc51d16cb
gnu: librecad: Ensure that icons are found at runtime.
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"wrap-executable".
2017-11-27 12:11:58 +01:00
Ricardo Wurmus 35e78aaa25
gnu: r-rhdf5: Fix build phase.
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Fix "unpack-smallhdf5"
phase.
2017-11-27 12:11:52 +01:00
Leo Famulari 9071581bf5
gnu: shotwell: Update to 0.27.1.
* gnu/packages/gnome.scm (shotwell): Update to 0.27.1.
2017-11-26 19:34:43 -05:00
ng0 f953aa56cc
gnu: fish-guix: Use new URL.
* gnu/packages/shells.scm (fish-guix)[source]: Use new URL.
(home-page): Use new URL.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-26 18:21:19 -05:00
ng0 66e47916d4
gnu: python-pycanberra: Switch to new download URL.
* gnu/packages/libcanberra.scm (python-pycanberra)[source]: Use new URL.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-26 18:21:19 -05:00
nee 6438a4682d
gnu: crawl: Update to 0.20.1.
* gnu/packages/games.scm (crawl): Update to 0.20.1.
(crawl-tiles): Update to 0.20.1.
[native-inputs]: Add pngcrush.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-26 17:52:24 -05:00
Efraim Flashner 6dbad376a2
gnu: openntpd: Update to 6.2p3.
* gnu/packages/ntp.scm (openntpd): Update to 6.2p3.
2017-11-26 22:33:18 +02:00
Leo Famulari 5b327a2d61
gnu: exim: Fix CVE-2017-16943.
* gnu/packages/patches/exim-CVE-2017-16943.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (exim)[source]: Use it.
2017-11-26 15:31:46 -05:00
nee 1ee13e01c8
gnu: image: Rename pngcrunch to pngcrush and update it.
* gnu/packages/image.scm (pngcrush): Renamed from pngcrunch.
[version]: update to 1.8.13.
[arguments]: Use the nolib Makefile.
[origin]: Use the no-lib tar.
[home-page]: update to the new website.
(pngcrunch): New deprecation variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-26 17:36:26 +01:00
Clément Lassieur 5c22f3726e
tests: messaging: Enable Prosody DIGEST-MD5 auth mechanism.
GNU Freetalk doesn't support SCRAM-SHA-1.

* gnu/tests/messaging.scm (%test-prosody): Override default
disable-sasl-mechanisms value.
2017-11-26 15:32:16 +01:00
Clément Lassieur e30038dae1
services: prosody: Add support for disable-sasl-mechanisms.
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/messaging.scm (prosody-configuration)[disable-sasl-mechanisms]:
New field.
2017-11-26 15:30:57 +01:00
Clément Lassieur 274b9500d1
services: prosody: Allow to add raw content to the config file.
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/messaging.scm (prosody-configuration)[raw-content]: New field.
(raw-content?, serialize-raw-content): New procedures.
2017-11-26 15:30:57 +01:00
Clément Lassieur 1f6f1a07c8
services: prosody: Add support for http-max-content-size.
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/messaging.scm (prosody-configuration)[http-max-content-size]:
New field.
2017-11-26 15:30:57 +01:00
Clément Lassieur f59de6bea9
services: prosody: Add support for http-external-url.
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/messaging.scm (prosody-configuration)[http-external-url]: New
field.
2017-11-26 15:30:56 +01:00
Clément Lassieur 5cc6dcd734
services: prosody: Adapt to Prosody 0.10.0.
* doc/guix.texi (Messaging Services): Add "mam" as a module example.  Document
'prosodyctl check'.  Replace 'prosodyctl cert request' with 'prosodyctl cert
import'.  Regenerate it.
* gnu/services/messaging.scm (serialize-module-list): Remove "posix" from the
default modules list because it is now automatically loaded.
(ssl-configuration)[key, certificate]: Remove them because they are now
automatically located.  Fix their docstrings.
(%default-modules-enabled): Add "carbons" and "blocklist".
(prosody-configuration)[certificates]: Set default directory from which
certificates/keys will be automatically located.
2017-11-26 15:30:56 +01:00
Clément Lassieur 3ba501083d
gnu: prosody: Add lua5.1-bitop to inputs.
It is required for mod_websocket on Lua 5.1 since Prosody 0.10.

* gnu/packages/messaging.scm (prosody)[inputs]: Add lua5.1-bitop.
2017-11-26 15:30:56 +01:00
Clément Lassieur cb31a52407
gnu: Add lua5.1-bitop.
* gnu/packages/lua.scm (make-lua-bitop): New procedure.
(lua5.2-bitop): Call make-lua-bitop.
(lua5.1-bitop): New variable.
2017-11-26 15:30:56 +01:00
Rutger Helling 93bfc9693a
gnu: prosody: Update to 0.10.0.
* gnu/packages/messaging.scm (prosody): Update to 0.10.0.

Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-11-26 15:30:56 +01:00
Mathieu Othacehe b8e7781122
vm: Use os-defined initrd intead of base-initrd.
* gnu/system/vm.scm (system-disk-image, system-qemu-image,
  virtualized-operating-system): Replace base-initrd by
  (operating-system-initrd os).

The system produced were always using base-initrd even if the user had
defined a custom initrd based on raw-initrd in the os declaration.
2017-11-26 13:50:37 +01:00
Rutger Helling 64047c850f
gnu: qtox: Update to 1.13.0.
* gnu/packages/messaging.scm (qtox): Update to 1.13.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-11-26 20:25:17 +08:00
Rutger Helling a0bd6fff42
gnu: tidy-html: Update to 5.6.0.
* gnu/packages/web.scm (tidy-html): Update to 5.6.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-11-26 20:17:55 +08:00
Efraim Flashner 51b0f09e05
gnu: mongodb: Remove some bundled sources.
* gnu/packages/databases.scm (mongodb)[source]: Add snippet to remove
some of the bundled sources.
[input]: Remove unused boost input.
2017-11-26 14:16:08 +02:00
Efraim Flashner 319b52c382
gnu: mongodb: Use system wiredtiger when available.
* gnu/packages/databases.scm (mongodb)[inputs]: Add wiredtiger on
64-bit systems.
[arguments]: When using wiredtiger, use system wiredtiger.
2017-11-26 14:16:08 +02:00
Efraim Flashner 29cfbfca43
gnu: mongodb: Build without wiredtiger on 32-bit systems.
* gnu/packages/databases.scm (mongodb)[arguments]: Add a configure-flag
to build without wiredtiger support on 32-bit systems.
2017-11-26 14:16:04 +02:00
Leo Famulari f1c49e75f4
gnu: mongodb: Update to 3.4.10.
* gnu/packages/databases.scm (mongodb): Update to 3.4.10.
2017-11-25 20:28:11 -05:00
Kei Kebreau 2af6be91d5
gnu: diffoscope: Fix error messages related to comparison tools.
* gnu/packages/package-management.scm (diffoscope)[arguments]: Replace readelf
substitution and add stat and getfacl substitutions.
[inputs]: Add acl.

Errors fixed include the following:
  "FileNotFoundError: [Errno 2] No such file or directory: 'readelf'"
  "diffoscope.comparators.directory: Unable to find 'getfacl', some directory
   metadata differences might not be noticed."
  "diffoscope.comparators.directory: Unable to find 'stat'"
2017-11-25 16:13:37 -05:00
Efraim Flashner 5ea35b42e4
gnu: qtsensors: Disable parallel tests.
* gnu/packages/qt.scm (qtsensors)[arguments]: Disable parallel tests.
2017-11-25 22:16:34 +02:00
Jan Nieuwenhuizen 68cb962a8d
gnu: guile-emacs: Resurrect, fixes #29186.
* gnu/packages/patches/guile-emacs-fix-configure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (guile-emacs): Use it.  Add workaround for src/deps
dir creation.  Fixes #29186.
2017-11-25 20:05:26 +01:00
Efraim Flashner 7989ba2af2
gnu: enlightenment: Update to 0.22.1.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.1.
2017-11-25 20:08:34 +02:00
Efraim Flashner 33b02e07fa
gnu: efl: Update to 1.20.6.
* gnu/packages/enlightenment.scm (efl): Update to 1.20.6.
2017-11-25 20:08:31 +02:00
Leo Famulari 1e0ea1d8df
gnu: utox: Make CHECK a native-input.
This is a followup to commit 907ab9e8cb.

* gnu/packages/messaging.scm (utox)[inputs]: Move CHECK ...
[native-inputs]: ... here.
2017-11-25 10:48:06 -05:00
Leo Famulari ef56fdc18d
gnu: jbig2dec: Update to 0.14.
* gnu/packages/image.scm (jbi2dec): Update to 0.14.
[source]: Remove obsolete patches.
* gnu/packages/patches/jbig2dec-CVE-2016-9601.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7885.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7975.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/patches/jbig2dec-ignore-testtest.patch: Update for new release.
2017-11-25 10:23:38 -05:00
Mark H Weaver a93ac4cbdf
gnu: linux-libre: Update to 4.14.2.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.2.
(%linux-libre-hash): Update hash.
2017-11-25 02:46:04 -05:00
Mark H Weaver b2785c54f7
gnu: linux-libre@4.9: Update to 4.9.65.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.65.
2017-11-25 02:45:12 -05:00
Mark H Weaver 749164cb71
gnu: linux-libre@4.4: Update to 4.4.102.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.102.
2017-11-25 02:44:17 -05:00
Alex Sassmannshausen e9291eaa42
gnu: Add guile-dsv.
* gnu/packages/guile.scm (guile-dsv): New variable.
2017-11-25 00:26:20 +01:00
Christopher Baines ea3b9f7b73
gnu: mail: Remove python-django-mailman3.
This package fails to build, as django-mailman3 currently only works with
Python 2.

* gnu/packages/mail.scm (python-django-mailman3): Removed variable.
  (python2-django-mailman3): Inline the use of python-django-mailman3, and
  remove the use of package-with-python2.
2017-11-24 22:16:39 +00:00
Christopher Baines 17dc2a0997
gnu: django: Fix building python-django-allauth.
* gnu/packages/django.scm (python-django-allauth)[arguments]: Modify the
  standard phases to skip a test, and run the tests using django-admin with
  the settings configured.
2017-11-24 22:16:33 +00:00
Oleg Pykhalov 7a45268935
gnu: Add emacs-highlight-stages.
* gnu/packages/emacs.scm (emacs-highlight-stages): New variable.
* gnu/packages/patches/emacs-highlight-stages-add-gexp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add this.
2017-11-25 00:18:45 +03:00
Alex Vong 8cc1fce1ba
gnu: java-fasterxml-jackson-dataformat-xml: Update to 2.9.2.
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-xml): Update to
2.9.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:23 +01:00
Alex Vong abe5347dd6
gnu: java-fasterxml-jackson-dataformat-yaml: Update to 2.9.2.
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-yaml): Update to
2.9.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:20 +01:00
Alex Vong 7cee3cb2c4
gnu: java-fasterxml-jackson-modules-base-jaxb: Update to 2.9.2.
* gnu/packages/java.scm (java-fasterxml-jackson-modules-base-jaxb): Update to
2.9.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:17 +01:00
Alex Vong 37cf0712da
gnu: java-fasterxml-jackson-databind: Update to 2.9.2.
* gnu/packages/java.scm (java-fasterxml-jackson-databind): Update to 2.9.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:14 +01:00
Alex Vong bd614de7b8
gnu: java-fasterxml-jackson-core: Update to 2.9.2.
* gnu/packages/java.scm (java-fasterxml-jackson-core): Update to 2.9.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:09 +01:00
Alex Vong b2383e55dc
gnu: java-fasterxml-jackson-annotations: Update to 2.9.2.
* gnu/packages/java.scm (java-fasterxml-jackson-annotations): Update to
2.9.2.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24 21:12:00 +01:00
Julien Lepiller 202e235ebe
gnu: php: Update to 7.1.12.
* gnu/packages/php.scm (php): Update to 7.1.12.
2017-11-24 20:59:41 +01:00
Kei Kebreau dd0134fcb7
gnu: gcl: Update snapshot.
* gnu/packages/lisp.scm (gcl): Update to 2.6.12-1.5956140.
[arguments]: Remove CFLAGS from and add GCL_CC and CC to make-flags; adjust
pre-conf phase.

This update includes small upstream bug fixes and optimizations.
2017-11-24 14:50:04 -05:00
Tobias Geerinckx-Rice 01e9bc463f
gnu: python-pytz, python-pytzdata: Update to 2017.3.x.
* gnu/packages/time.scm (python-pytz): Update to 2017.3.
(python-pytzdata): Update to 2017.3.1.
2017-11-24 19:05:01 +01:00
Tobias Geerinckx-Rice cc558bde52
gnu: knot: Update to 2.6.3.
* gnu/packages/dns.scm (knot): Update to 2.6.3.
2017-11-24 19:05:01 +01:00
Tobias Geerinckx-Rice 77e3ce3e90
gnu: emacs-org-contrib: Fix typo in description.
* gnu/packages/emacs.scm (emacs-org-contrib)[description]: Fix typo.
2017-11-24 19:05:01 +01:00
Tobias Geerinckx-Rice 70c68ed555
gnu: system->defconfig: Fix typo.
* gnu/packages/linux.scm (system->defconfig): Fix typo.
2017-11-24 19:05:00 +01:00
Ludovic Courtès f7f8930b37
gnu: coq-interval: Fix source URL for 3.3.0.
This is a followup to 6efc999678.
Fixes <https://bugs.gnu.org/29284>.
Reported by Efraim Flashner <efraim@flashner.co.il>.

* gnu/packages/ocaml.scm (coq-interval): Adjust URL.
2017-11-24 18:22:42 +01:00
Rutger Helling 9c3c2caa6c
gnu: parallel: Update to 20171122.
* gnu/packages/parallel.scm (parallel): Update to 20171122.
2017-11-24 09:31:49 -05:00
Efraim Flashner 7997d37bac
gnu: qt: Update to 5.9.3.
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets,
qtsensors, qtmultimedia, qtwayland, qtserialport, qtserialbus,
qtwebchannel, qtlocation, qttools, qtscript, qtquickcontrols,
qtquickcontrols2, qtgraphicaleffects, qtgamepad, qtscxml,
qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth,
qtremoteobjects, qtspeech): Update to 5.9.3.
2017-11-24 16:18:35 +02:00
Efraim Flashner 06378ceeb1
gnu: qt@5: Update to 5.9.3.
* gnu/packages/qt.scm (qt@5): Update to 5.9.3.
2017-11-24 16:18:35 +02:00
Rutger Helling 907ab9e8cb
gnu: utox: Update to 0.16.1.
* gnu/packages/messaging.scm (utox): Update to 0.16.1.
[inputs]: Add check and gtk+.
[native-inputs]: Add pkg-config.
[arguments]: Remove 'fix-freetype-include' and 'patch-cmake-find-utox' phases.
Add 'patch-absolute-filename-libgtk-3' and 'wrap-program' phases.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-23 20:26:24 -05:00
Leo Famulari d7c64ad513
gnu: Add MASSCAN.
* gnu/packages/admin.scm (masscan): New variable.
2017-11-23 20:26:18 -05:00
Rutger Helling 17c3f77641
gnu: supertuxkart: Update to 0.9.3.
* gnu/packages/games.scm (supertuxkart): Update to 0.9.3.
[arguments] <#:configure-flags>: Pass -DBUILD_RECORDER=0.
* gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-23 23:19:02 +01:00
Rutger Helling 5864f1c1ee
gnu: higan: Update to 106.
* gnu/packages/games.scm (higan): Update to 106.
* gnu/packages/patches/higan-remove-march-native-flag.patch: Adjust.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-23 22:59:49 +01:00
Brendan Tildesley 327620dc72
gnu: pcmanfm: Fix CVE-2017-8934.
* gnu/packages/patches/pcmanfm-CVE-2017-8934.patch: New file.  This patch was
imported from Arch Linux.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/lxde.scm (pcmanfm)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-23 22:55:58 +01:00
Brendan Tildesley 0dcad042a5
gnu: pcmanfm: Add missing inputs. Remove comment.
* gnu/packages/lxde.scm (pcmanfm)[inputs]: Add GVFS.
[propagated-inputs]: Add LXMENU-DATA.
Remove comment suggesting to use --sysconfdir.  Inspection of the configure
script shows that <output>/etc is used for configuration by default anyway,
so such a flag is not needed.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-23 22:54:03 +01:00
Mathieu Othacehe be07cc4549
bootloader: extlinux: Fix device tree path.
* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Use kernel
  directory to format device tree file path.
2017-11-23 20:07:04 +01:00
Mathieu Othacehe 7044b92dbd
linux-libre: Adapt some arm options to match intel conf.
* gnu/packages/aux-files/linux-libre/4.14-arm.conf: GuixSD base-initrd expects
  ext4 and fat filesystem to be built-in. Adapt configuration
  accordingly. Also set devtmpfs_mount to yes.
2017-11-23 20:06:58 +01:00
Tobias Geerinckx-Rice d868cf4f98
gnu: fish: Update to 2.7.0.
* gnu/packages/shell.scm (fish): Update to 2.7.0.
[source]: Add alternative source.
2017-11-23 17:21:43 +01:00
Tobias Geerinckx-Rice e57e3dc57f
gnu: knot: Update to 2.6.2.
* gnu/packages/dns.scm (knot): Update to 2.6.2.
2017-11-23 15:52:51 +01:00
Ricardo Wurmus e6debcaf02
gnu: subread: Update to 1.6.0.
* gnu/packages/bioinformatics.scm (subread): Update to 1.6.0.
2017-11-23 13:16:12 +01:00
Nicolas Goaziou 5aa6e0d04a
gnu: emacs-org: Update to 9.1.3.
* gnu/packages/emacs.scm (emacs-org): Update to 20171116 a.k.a. Org 9.1.3.
2017-11-22 23:31:01 +01:00
Ludovic Courtès 9e549ad1c3
services: dicod: Run in a container.
* gnu/services/dict.scm (dicod-shepherd-service): Add
'with-imported-modules' form and 'modules' field.  Use
'make-forkexec-constructor/container' instead of
'make-forkexec-constructor'.
2017-11-22 23:16:01 +01:00
Ludovic Courtès 0cb9c9d170
shepherd: Include /etc/group in service containers.
* gnu/build/shepherd.scm (default-mounts)[passwd]: Rename to...
[accounts]: ... this.  Add /etc/group.
2017-11-22 23:02:35 +01:00
Ludovic Courtès d655f39c44
gnu: gnumeric: Update to 1.12.36.
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.36.
2017-11-22 22:56:58 +01:00
Ludovic Courtès 26ac92d49b
gnu: goffice: Update to 0.10.36.
* gnu/packages/gnome.scm (goffice): Update to 0.10.36.
2017-11-22 22:56:30 +01:00