Dave Love
bb0f6d7526
gnu: openmpi: Description mentions MPI 3.0.
...
* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25 18:10:08 +02:00
Dave Love
1f9bff4152
gnu: openmpi: Update to 1.10.7.
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* gnu/packages/mpi.scm (openmpi): Update to 1.10.7.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25 18:09:27 +02:00
Ludovic Courtès
386f541556
hydra: Add 'guix.SYSTEM' jobs.
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* build-aux/hydra/guix.scm (package->alist): Disable grafting.
(hydra-jobs): Return 'guix.SYSTEM' jobs in addition to 'tarball'.
2017-07-25 17:46:17 +02:00
Ludovic Courtès
06ce8e5680
hydra: Simplify 'tarball' job.
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* build-aux/hydra/guix.scm (tarball-package): Remove.
(hydra-jobs): Use 'dist-package' instead of 'tarball-package'.
2017-07-25 17:46:17 +02:00
Ludovic Courtès
70bc608503
gnu: Add guile2.0-git.
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* gnu/packages/guile.scm (guile2.0-git): New variable.
2017-07-25 17:46:17 +02:00
Ludovic Courtès
726ecfeb3a
gnu: Add guile2.0-bytestructures.
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* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-bytestructures)[source]: Use it.
[arguments]: Unpack the source.
[native-inputs]: New field.
(guile2.0-bytestructures): New variable.
2017-07-25 17:46:17 +02:00
Kei Kebreau
0093b1262b
gnu: maxima: Ensure binutils are available at runtime.
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* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
2017-07-25 07:58:55 -04:00
Kei Kebreau
6b2eafaaa8
Revert "gnu: maxima: Ensure gcc is available at runtime."
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This reverts commit f2fa86cc82
.
Commit 5ea8dbf0c9
fixes the underlying
issue in GNU Common Lisp.
2017-07-25 07:58:46 -04:00
Kei Kebreau
5ea8dbf0c9
gnu: gcl: Ensure gcc and binutils are available at runtime.
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* gnu/packages/lisp.scm (gcl)[arguments]: Add -fgnu89-inline to CFLAGS.
Add GCC path to make-flags. Modify 'pre-conf' phase. Add 'wrap' phase.
2017-07-25 07:58:06 -04:00
Mark H Weaver
ebc9f7050c
gnu: webkitgtk: Update to 2.16.6 [security fixes].
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Includes fixes for CVE-2017-7039, CVE-2017-7018, CVE-2017-7030, CVE-2017-7037,
CVE-2017-7034, CVE-2017-7055, CVE-2017-7056, CVE-2017-7064, CVE-2017-7061,
CVE-2017-7048, and CVE-2017-7046.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.6.
2017-07-25 07:32:25 -04:00
Ludovic Courtès
a84ea2191e
system: Add a default '.guile' skeleton.
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* gnu/system/shadow.scm (default-skeletons): Add ".guile".
2017-07-25 12:23:26 +02:00
Ludovic Courtès
585347d7aa
Add 'guix weather'.
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* guix/scripts/weather.scm: New file.
* Makefile.am (MODULES): Add it.
* doc/guix.texi (Substitutes, Invoking guix publish): Mention "guix
weather".
(Invoking guix weather): New node.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-07-25 12:15:43 +02:00
Leo Famulari
5b4a6ba044
gnu: xterm: Update to 330.
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* gnu/packages/xorg.scm (xterm): Update to 330.
2017-07-24 22:54:18 -04:00
Leo Famulari
0e8fed86d8
gnu: dialog: Update to 1.3-20170509.
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* gnu/packages/ncurses.scm (dialog): Update to 1.3-20170509.
2017-07-24 22:54:15 -04:00
Leo Famulari
fce8285e4b
gnu: opus: Update to 1.2.1.
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* gnu/packages/xiph.scm (opus): Update to 1.2.1.
[source]: Use new source URL.
2017-07-24 17:37:05 -04:00
Christopher Baines
d61a894bfa
gnu: gnome: Add deja-dup.
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* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
2017-07-24 20:05:49 +01:00
Ludovic Courtès
e956ae16a4
import: cpan: Updater returns a list of URLs.
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* guix/import/cpan.scm (latest-release): Return a list in the 'urls'
field of 'upstream-source'.
2017-07-24 17:35:26 +02:00
Ludovic Courtès
c022e11187
gnu: guix: Update snapshot.
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* gnu/packages/package-management.scm (guix): Update to f1ddfe4
.
2017-07-24 12:25:08 +02:00
Ludovic Courtès
f1ddfe4f14
gnu: python-flaky: Fix Texinfo markup in description.
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* gnu/packages/python.scm (python-flaky)[description]: Escape "@".
2017-07-24 12:05:53 +02:00
Leo Famulari
2472f7a8f1
gnu: isc-dhcp: Update bundled bind to 9.9.10-P3.
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This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.9.10-P2, commit ecb232bdfc
.
See 'CHANGELOG' in the source distribution for more information.
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P3.
2017-07-23 19:05:37 -04:00
Leo Famulari
5391c6c9d2
gnu: bind: Update to 9.11.1-P3.
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This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.11.1-P2, commit faa1369e3c
.
See 'CHANGELOG' in the source distribution for more information.
* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P3.
2017-07-23 19:05:37 -04:00
Mark H Weaver
c67d80563f
gnu: ncurses/gpm: Move to (gnu packages ncurses).
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This is needed to avoid compilation problems caused by the cyclic dependency
between (gnu packages ncurses) and (gnu packages linux).
* gnu/packages/linux.scm (ncurses/gpm): Move to ...
* gnu/packages/ncurses.scm (ncurses/gpm): ... here. Fix misleading
indentation. Add (gnu packages linux) to the module imports.
2017-07-23 17:04:51 -04:00
Efraim Flashner
fd900d68a5
gnu: Add support for aarch64's compiled kernel.
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* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to
find and install the aarch64-linux kernel.
* gnu/system.scm (system-linux-image-file-name): Add entry for aarch64.
2017-07-23 23:33:18 +03:00
Efraim Flashner
826adfdb37
gnu: Add xf86-video-freedreno.
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* gnu/packages/xorg.scm (xf86-video-freedreno): New variable.
2017-07-23 23:33:17 +03:00
Efraim Flashner
4adeb3f6e6
gnu: Add u-boot-odroid-c2.
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* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable.
2017-07-23 23:33:16 +03:00
Efraim Flashner
1313628339
gnu: u-boot: Update to 2017.07.
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* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07.
2017-07-23 23:33:13 +03:00
Marius Bakke
846cb73865
gnu: tevent: Update to 0.9.33.
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* gnu/packages/samba.scm (tevent): Update to 0.9.33.
2017-07-23 22:01:29 +02:00
Marius Bakke
85a5800e52
gnu: talloc: Update to 2.1.10.
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* gnu/packages/samba.scm (talloc): Update to 2.1.10.
2017-07-23 22:01:29 +02:00
Marius Bakke
fbed150133
gnu: ldb: Update to 1.1.31.
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* gnu/packages/samba.scm (ldb): Update to 1.1.31.
[native-inputs]: Add CMOCKA.
2017-07-23 22:01:28 +02:00
Marius Bakke
17c3f1fb67
gnu: cmocka: Update to 1.1.1.
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* gnu/packages/check.scm (cmocka): Update to 1.1.1.
2017-07-23 22:01:28 +02:00
Marius Bakke
38bb9df150
gnu: tdb: Update to 1.3.14.
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* gnu/packages/databases.scm (tdb): Update to 1.3.14.
2017-07-23 22:01:28 +02:00
Marius Bakke
09efef3384
gnu: python-scipy: Update to 0.19.1.
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* gnu/packages/python.scm (python-scipy): Update to 0.19.1.
[source]: Use 'pypi-uri'.
2017-07-23 22:01:28 +02:00
Marius Bakke
71d20587a5
gnu: python-matplotlib: Update to 2.0.2.
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* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2.
[source]: Use 'pypi-uri'.
2017-07-23 22:01:28 +02:00
Marius Bakke
9e5ee6b60c
gnu: python-pyparsing: Update to 2.2.0.
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* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to
2.2.0.
2017-07-23 22:01:27 +02:00
Marius Bakke
007176e710
gnu: python-pyparsing: Use 'modify-phases' syntax.
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* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use
'modify-phases'.
2017-07-23 22:01:27 +02:00
Oleg Pykhalov
6e864d0081
gnu: Add xmobar.
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gnu/packages/wm.scm (xmobar): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-23 15:29:36 -04:00
Efraim Flashner
8f155e3cff
gnu: bash-completion: Update to 2.7.
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* gnu/packages/bash.scm (bash-completion): Update to 2.7.
2017-07-23 11:05:54 +03:00
ng0
9478c05955
gnu: getmail: Update to 5.1.
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* gnu/packages/mail.scm (getmail): Update to 5.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:34:47 -04:00
Ben Woodcroft
f3f68a442c
gnu: metabat: Update to 2.11.1.
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* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 10:29:36 +10:00
Ben Woodcroft
897ab082b2
gnu: python-plastid: Update to 0.4.8.
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* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
2017-07-23 10:29:36 +10:00
Ben Woodcroft
0620387a59
gnu: bcftools: Update to 1.5.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag. Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-23 10:29:36 +10:00
Ben Woodcroft
63fa0ffcd4
gnu: samtools: Update to 1.5.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
2017-07-23 10:29:36 +10:00
Ben Woodcroft
4fb6d1280e
gnu: htslib: Update to 1.5.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
2017-07-23 10:29:35 +10:00
Ben Woodcroft
60739965da
gnu: python-pysam: Update to 0.11.2.2.
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* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
2017-07-23 10:29:35 +10:00
Ben Woodcroft
bca2c57658
gnu: bamm: Use htslib-1.3.
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* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
2017-07-23 10:29:35 +10:00
Ben Woodcroft
98593f9f51
gnu: bcftools: Update to 1.4.1.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch. Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-07-23 10:29:35 +10:00
Ben Woodcroft
4ab1644049
gnu: samtools: Update to 1.4.1.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
2017-07-23 10:29:34 +10:00
Ben Woodcroft
a9e4a1e641
gnu: htslib: Update to 1.4.1.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
2017-07-23 10:29:34 +10:00
Ben Woodcroft
c842d42593
gnu: samtools: Use "modify-phases" syntax.
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* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.
2017-07-23 10:29:34 +10:00
ng0
c62d1a6e6c
gnu: bspwm: Update to 0.9.3.
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* gnu/packages/wm.scm (bspwm): Update to 0.9.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:17:46 -04:00