Commit Graph

32731 Commits

Author SHA1 Message Date
Ricardo Wurmus 1ea708af8c
gnu: Add r-survivalroc.
* gnu/packages/cran.scm (r-survivalroc): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus afc0d8158b
gnu: Add r-bootstrap.
* gnu/packages/cran.scm (r-bootstrap): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 4fcbd7eaf3
gnu: Add r-rmeta.
* gnu/packages/cran.scm (r-rmeta): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus c2d6e866ac
gnu: Add r-drc.
* gnu/packages/cran.scm (r-drc): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 99c164a5c7
gnu: Add r-spatialextremes.
* gnu/packages/cran.scm (r-spatialextremes): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 32725458b7
gnu: Add r-fields.
* gnu/packages/cran.scm (r-fields): New variable.
2019-01-09 17:13:52 +01:00
Ricardo Wurmus 90104ecd66
gnu: Add r-spam.
* gnu/packages/cran.scm (r-spam): New variable.
2019-01-09 17:13:51 +01:00
Ricardo Wurmus f51dcc275e
gnu: Add r-dotcall64.
* gnu/packages/cran.scm (r-dotcall64): New variable.
2019-01-09 17:13:49 +01:00
Ricardo Wurmus 658b2b62cb
gnu: Add r-assertive.
* gnu/packages/cran.scm (r-assertive): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 39231abf4d
gnu: Add r-assertive-data.
* gnu/packages/cran.scm (r-assertive-data): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 39ef8e097b
gnu: Add r-assertive-data-uk.
* gnu/packages/cran.scm (r-assertive-data-uk): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 6d3702e5ce
gnu: Add r-assertive-data-us.
* gnu/packages/cran.scm (r-assertive-data-us): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 66d0a0a706
gnu: Add r-assertive-strings.
* gnu/packages/cran.scm (r-assertive-strings): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 29d9a2affb
gnu: Add r-assertive-datetimes.
* gnu/packages/cran.scm (r-assertive-datetimes): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 50ce8b1e2c
gnu: Add r-assertive-code.
* gnu/packages/cran.scm (r-assertive-code): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 1f0a761a14
gnu: Add r-assertive-files.
* gnu/packages/cran.scm (r-assertive-files): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 5e3bd35506
gnu: Add r-assertive-types.
* gnu/packages/cran.scm (r-assertive-types): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus dcafcfb4fd
gnu: Add r-assertive-reflection.
* gnu/packages/cran.scm (r-assertive-reflection): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus c358b5d418
gnu: Add r-assertive-models.
* gnu/packages/cran.scm (r-assertive-models): New variable.
2019-01-09 15:43:51 +01:00
Ricardo Wurmus 905aa46ae5
gnu: Add r-assertive-matrices.
* gnu/packages/cran.scm (r-assertive-matrices): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 2da2d2f605
gnu: Add r-assertive-sets.
* gnu/packages/cran.scm (r-assertive-sets): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus dac9c1f604
gnu: Add r-assertive-numbers.
* gnu/packages/cran.scm (r-assertive-numbers): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 4b2d17edaa
gnu: Add r-assertive-properties.
* gnu/packages/cran.scm (r-assertive-properties): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 8004bb2451
gnu: Add r-assertive-base.
* gnu/packages/cran.scm (r-assertive-base): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus a536c7c9ad
gnu: Add r-rmpfr.
* gnu/packages/cran.scm (r-rmpfr): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 1ab5160434
gnu: Add r-gmp.
* gnu/packages/cran.scm (r-gmp): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus dfd09f7bad
gnu: Add r-bigrquery.
* gnu/packages/cran.scm (r-bigrquery): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus ad6fea1690
gnu: Add r-ontologyindex.
* gnu/packages/cran.scm (r-ontologyindex): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 9170eb7f1f
gnu: Add r-rapidjsonr.
* gnu/packages/cran.scm (r-rapidjsonr): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus e7176ac5bd
gnu: Add r-pixmap.
* gnu/packages/cran.scm (r-pixmap): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 895efece37
gnu: Add r-strucchange.
* gnu/packages/cran.scm (r-strucchange): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus d28be7b76b
gnu: Add r-als.
* gnu/packages/cran.scm (r-als): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 9401f56b81
gnu: Add r-chemometricswithr.
* gnu/packages/cran.scm (r-chemometricswithr): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 25861356ed
gnu: Add r-iso.
* gnu/packages/cran.scm (r-iso): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 00436e2cac
gnu: Add r-nnls.
* gnu/packages/cran.scm (r-nnls): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus 2871b670a8
gnu: Add r-kohonen.
* gnu/packages/cran.scm (r-kohonen): New variable.
2019-01-09 15:43:50 +01:00
Ricardo Wurmus d0eb09a134
gnu: Add r-grimport.
* gnu/packages/cran.scm (r-grimport): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 7eec973e81
gnu: Add r-tractor-base.
* gnu/packages/cran.scm (r-tractor-base): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus b98662c53a
gnu: Add r-reportr.
* gnu/packages/cran.scm (r-reportr): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus cb03d6c6f3
gnu: Add r-ore.
* gnu/packages/cran.scm (r-ore): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 6e09f50613
gnu: Add r-shades.
* gnu/packages/cran.scm (r-shades): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus f79e63a571
gnu: Add r-rnifti.
* gnu/packages/cran.scm (r-rnifti): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus b2e777b27c
gnu: Add r-tfmpvalue.
* gnu/packages/cran.scm (r-tfmpvalue): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus adcd0cc87e
gnu: Add r-splitstackshape.
* gnu/packages/cran.scm (r-splitstackshape): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 5f0fbfc0ad
gnu: Add r-lassopv.
* gnu/packages/cran.scm (r-lassopv): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 3d62d98e69
gnu: Add r-flare.
* gnu/packages/cran.scm (r-flare): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 029425cbce
gnu: Add r-vbsr.
* gnu/packages/cran.scm (r-vbsr): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 5574cb812a
gnu: Add r-rpostgresql.
* gnu/packages/cran.scm (r-rpostgresql): New variable.
2019-01-09 15:43:49 +01:00
Ricardo Wurmus 3088b3fc5b
gnu: Add r-rspectra.
* gnu/packages/cran.scm (r-rspectra): New variable.
2019-01-09 15:43:45 +01:00
Ludovic Courtès 0991fd5336
build: Require Guile 2.2.
* configure.ac: Require Guile 2.2.
* README: Adjust accordingly.
* doc/guix.texi (Requirements): Likewise.
* gnu/packages/package-management.scm (guile2.0-guix): Deprecate.
(guix-minimal): Inherit from GUIX, not from GUILE2.0-GUIX.
2019-01-09 14:47:53 +01:00
Eric Bavier fefcb122ac
gnu: dvdisaster: Run regression tests.
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Remove #:tests? argument.
Add 'check' phase.
2019-01-08 09:09:31 -06:00
Eric Bavier 98b0ec7fa6
gnu: dvdisaster: Install desktop file.
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add 'install-desktop phase.
2019-01-08 09:09:25 -06:00
Clément Lassieur 627e6d8c11
gnu: prosody: Update to 0.11.1.
* gnu/packages/messaging.scm (prosody): Update to 0.11.1.
[arguments]: Replace "Makefile" with "GNUmakefile".  Change "5.1" to "5.2".
Explain why there are no tests.
[inputs]: Replace lua-5.1, lua5.1-bitop, lua5.1-expat, lua5.1-socket,
lua5.1-filesystem, lua5.1-sec with lua-5.2, lua5.2-bitop, lua5.2-expat,
lua5.2-socket, lua5.2-filesystem, lua5.2-sec.
2019-01-08 15:23:36 +01:00
Clément Lassieur eb5b6c5777
gnu: Add lua5.2-sec.
* gnu/packages/lua.scm (lua5.2-sec): New variable.
(make-lua-sec): New procedure.
(lua5.1-sec, lua5.2-sec): Call it.
2019-01-08 15:23:36 +01:00
Clément Lassieur d994325747
gnu: Add lua-filesystem and lua5.2-filesystem.
* gnu/packages/lua.scm (lua-filesystem, lua5.2-filesystem): New variables.
(make-lua-filesystem): New procedure.
(lua-filesystem, lua5.1-filesystem, lua5.2-filesystem): Call it.
2019-01-08 15:23:36 +01:00
Clément Lassieur 253aab77c5
gnu: Add lua5.2-socket.
* gnu/packages/lua.scm (lua5.2-socket): New variable.
(make-lua-socket): New procedure.
(lua5.1-socket, lua5.2-socket): Call it.
2019-01-08 15:23:36 +01:00
Clément Lassieur 7c97a0631e
gnu: Add lua5.2-expat.
* gnu/packages/lua.scm (lua5.2-expat): New variable.
(make-lua-expat): New procedure.
(lua5.1-expat, lua5.2-expat): Call it.
2019-01-08 15:23:36 +01:00
Efraim Flashner 580f33e119
gnu: criu: Update to 3.11.
* gnu/packages/virtualization.scm (criu): Update to 3.11.
[arguments]: Add custom phase to patch python calls.
2019-01-08 12:29:42 +02:00
Efraim Flashner 49fe965d28
gnu: criu: Fix building on armhf-linux.
* gnu/packages/virtualization.scm (criu)[arguments]: Hardcode the arm
version in the Makefile.
2019-01-08 12:29:40 +02:00
Clément Lassieur b509381089
gnu: gajim-omemo: Update to 2.6.26.
* gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.26.
2019-01-08 10:19:55 +01:00
Clément Lassieur 5cfec72f39
gnu: gajim: Update to 1.1.1.
* gnu/packages/messaging.scm (gajim): Update to 1.1.1.
[arguments]: Replace #:test-target with a 'check' phase.
2019-01-08 10:19:55 +01:00
Tobias Geerinckx-Rice eac5d425cd
gnu: tor: Update to 0.3.4.10.
* gnu/packages/tor.scm (tor): Update to 0.3.4.10.
2019-01-08 04:21:53 +01:00
Tobias Geerinckx-Rice be4f8391a4
gnu: privoxy: Update to 3.0.28.
* gnu/packages/tor.scm (privoxy): Update to 3.0.28.
2019-01-08 04:21:52 +01:00
Rutger Helling 3c85058c0e
gnu: libnet: Update to 1.2-rc3.
* gnu/packages/networking.scm (libnet): Update to 1.2-rc3.
[source]: Use git-fetch.
2019-01-07 22:07:01 +01:00
Julien Lepiller 8737666a99
gnu: ocaml-graph: Add upstream-name.
* gnu/packages/ocaml.scm (ocaml-graph)[properties]: Add upstream-name.
2019-01-07 22:05:47 +01:00
Julien Lepiller 33af92dd99
gnu: Move coq packages from ocaml to coq.
* gnu/packages/ocaml.scm (coq, proof-general, coq-flocq, coq-gappa, coq-mathcomp)
(coq-coquelicot, coq-bignums, coq-interval): Move from here...
* gnu/packages/coq.scm: ... to here.  New file.
2019-01-07 22:05:37 +01:00
Alex Kost 912f0541a3
gnu: emacs-guix: Update to 0.5.1.1.
* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.1.1.
2019-01-07 22:52:46 +03:00
Danny Milosavljevic 40c7476af8
gnu: containerd: Update synopsis.
* gnu/packages/docker.scm (containerd)[synopsis]: Modify.
2019-01-07 19:13:04 +01:00
Danny Milosavljevic 54891e850a
gnu: containerd: Enable tests.
* gnu/packages/docker.scm (containerd)[arguments]: Remove #:tests?.
2019-01-07 19:12:14 +01:00
Ricardo Wurmus 1f1e338ad4
gnu: Add missing use-module clause.
This is a follow-up to 4e5b8f7215.

* gnu/packages/docker.scm: Add missing use-module clause.
2019-01-07 18:45:23 +01:00
Ricardo Wurmus d53b23176f
gnu: Add r-corpcor.
* gnu/packages/cran.scm (r-corpcor): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus e3bb076678
gnu: Add r-ddrtree.
* gnu/packages/cran.scm (r-ddrtree): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus 9f33d76c33
gnu: Add r-qlcmatrix.
* gnu/packages/cran.scm (r-qlcmatrix): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus 58bc8857fb
gnu: Add r-combinat.
* gnu/packages/cran.scm (r-combinat): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus 13f5837b4c
gnu: Add r-densityclust.
* gnu/packages/cran.scm (r-densityclust): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus b614009e6a
gnu: Add r-sparsesvd.
* gnu/packages/cran.scm (r-sparsesvd): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus fbebccf7f6
gnu: Add r-docopt.
* gnu/packages/cran.scm (r-docopt): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus 45b469a472
gnu: Add r-rvcheck.
* gnu/packages/cran.scm (r-rvcheck): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus 61d7334906
gnu: Add r-tidytree.
* gnu/packages/cran.scm (r-tidytree): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus a6e4413d64
gnu: Add r-colorramps.
* gnu/packages/cran.scm (r-colorramps): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus e37935e457
gnu: Add r-wordcloud.
* gnu/packages/cran.scm (r-wordcloud): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus f3949fecb3
gnu: Add r-waveslim.
* gnu/packages/cran.scm (r-waveslim): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus db084d79ea
gnu: Add r-tiff.
* gnu/packages/cran.scm (r-tiff): New variable.
2019-01-07 18:44:04 +01:00
Ricardo Wurmus 44b0c5b5b1
gnu: Add r-fftwtools.
* gnu/packages/cran.scm (r-fftwtools): New variable.
2019-01-07 18:44:03 +01:00
Ricardo Wurmus 71601a5d92
gnu: Add r-softimpute.
* gnu/packages/cran.scm (r-softimpute): New variable.
2019-01-07 18:44:03 +01:00
Ricardo Wurmus 03a3ec5e18
gnu: Add r-adgoftest.
* gnu/packages/cran.scm (r-adgoftest): New variable.
2019-01-07 18:44:03 +01:00
Ricardo Wurmus a50abb3614
gnu: Add r-gsl.
* gnu/packages/cran.scm (r-gsl): New variable.
2019-01-07 18:44:03 +01:00
Ricardo Wurmus ced51a204e
gnu: Add r-stabledist.
* gnu/packages/cran.scm (r-stabledist): New variable.
2019-01-07 18:44:03 +01:00
Efraim Flashner dcd1aa2e64
gnu: perl-lingua-translit: Update to 0.28.
* gnu/packages/perl.scm (perl-lingua-translit): Update to 0.28.
2019-01-07 19:42:41 +02:00
Danny Milosavljevic 4e5b8f7215
gnu: Add containerd.
* gnu/packages/docker.scm (containerd): New variable.
2019-01-07 16:41:17 +01:00
Danny Milosavljevic 7f2d67c826
gnu: Add dummy linker for arm-elf.
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for arm-elf.
2019-01-07 16:39:35 +01:00
Ricardo Wurmus 2a2760a08f
gnu: Move R packages from geo.scm to cran.scm.
* gnu/packages/geo.scm (r-maps, r-mapproj, r-rgooglemaps, r-geosphere,
r-ggmap): Move from here...
* gnu/packages/cran.scm: ...to here.
2019-01-07 15:55:06 +01:00
Ricardo Wurmus 576e74eee8
gnu: emacs-ess: Move to (gnu packages statistics).
* gnu/packages/emacs.scm (emacs-ess): Move from here...
* gnu/packages/statistics.scm (emacs-ess): ...to here.
2019-01-07 15:55:06 +01:00
Ricardo Wurmus 61f2587db9
gnu: python-rpy2: Move to (gnu packages statistics).
* gnu/packages/python.scm (python-rpy2): Move from here...
* gnu/packages/statistics.scm (python-rpy2): ...to here.
2019-01-07 15:55:06 +01:00
Ricardo Wurmus e0d3f4bf1a
gnu: Remove reference to (gnu packages statistics).
* gnu/packages/web.scm: Remove obsolete use-module clause.
2019-01-07 15:55:06 +01:00
Ricardo Wurmus d9bec9a87b
gnu: r-rmysql: Move from databases.scm to cran.scm
* gnu/packages/databases.scm (r-rmysql): Move from here...
* gnu/packages/cran.scm (r-rmysql): ...to here.
2019-01-07 15:55:06 +01:00
Jelle Licht 41a010875b
gnu: biber: Update to 2.12.
* gnu/packages/tex.scm (biber): Update to 2.12.
[source]: Use 'git-fetch'. Add patch.
[inputs]: Add perl-file-slurper. Remove perl-file-slurp.
* gnu/packages/patches/biber-fix-encoding-write.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-01-07 15:40:58 +01:00
Ricardo Wurmus 60a166c629
gnu: r-feather: Move from serialization.scm to cran.scm.
* gnu/packages/serialization.scm (r-feather): Move from here...
* gnu/packages/cran.scm (r-feather): ...to here.
2019-01-07 15:21:09 +01:00
Ludovic Courtès 67eebb19b7
gnu: Fix top-level circular references between emacs.scm and llvm.scm.
Previously, loading either of these two modules could fail somewhat
non-deterministically because each top-level was referencing a variable
defined by the other module's top-level.

* gnu/packages/emacs.scm (package-elisp-from-package): Move to...
* gnu/packages/llvm.scm (package-elisp-from-package): Here.  Keep
private.
2019-01-07 15:09:30 +01:00
Jelle Licht 37e461e6f4
gnu: perl-file-slurper: Update to 0.012.
* gnu/packages/perl.scm (perl-file-slurper): Update to 0.012.
[native-inputs]: Add perl-test-warnings.
2019-01-07 15:08:08 +01:00