Commit Graph

6241 Commits

Author SHA1 Message Date
Ricardo Wurmus 2127cedb23 gnu: Add FASTX Toolkit.
* gnu/packages/bioinformatics.scm (fastx-toolkit): New variable.
2015-04-16 10:28:37 +02:00
Ricardo Wurmus f571e1c346 gnu: Add libgtextutils.
* gnu/packages/textutils.scm (libgtextutils): New variable.
2015-04-16 10:28:30 +02:00
Ricardo Wurmus 4f2bde4433 gnu: tbb: Set library rpath.
* gnu/packages/tbb.scm (tbb)[arguments]: Add the rpath for lib directory of
  output to LDFLAGS.
2015-04-16 10:23:03 +02:00
Paul van der Walt 945e9c0cef gnu: mu: Update to 0.9.12.
* gnu/packages/mail.scm (mu): Update to version 0.9.12.
2015-04-16 09:55:22 +02:00
Ludovic Courtès 09722b11e5 doc: Add section on installation from a binary tarball.
* doc/guix.texi (Binary Installation): New section.
2015-04-15 23:25:04 +02:00
Ludovic Courtès aa46a028c4 profiles: Generalize "hooks" for 'profile-derivation'.
* guix/profiles.scm (info-dir-file): Remove (null? (manifest-entries
  manifest)) test.
  (ca-certificate-bundle): Likewise.
  (ghc-package-cache-file): Turn 'if' into 'and', and remove second
  arm.
  (%default-profile-hooks): New variable.
  (profile-derivation): Remove #:info-dir?, #:ghc-package-cache?, and
  #:ca-certificate-bundle?.  Add #:hooks.  Iterate over HOOKS.  Adjust
  'inputs' accordingly.
* guix/scripts/package.scm (guix-package): Adjust 'profile-derivation'
  call accordingly.
* tests/packages.scm ("--search-paths with pattern"): Likewise.
* tests/profiles.scm ("profile-derivation",
  "profile-derivation, inputs"): Likewise.
2015-04-15 22:44:51 +02:00
Ricardo Wurmus e46d517f6d gnu: icedtea6: Update to 1.13.7.
* gnu/packages/java.scm (icedtea6): Update to version 1.13.7.
2015-04-15 17:38:09 +02:00
Andreas Enge a8bd3e5ebb gnu: calibre: Update to 2.24.0.
* gnu/packages/ebook.scm (calibre): Update to 2.24.0.
2015-04-15 10:33:08 +02:00
Ludovic Courtès 8bc35f85b7 build: Add missing 'make-binary-tarball.scm' script.
This script is used by the target added in 9d3fb6c.

* build-aux/make-binary-tarball.scm: New file.
* Makefile.am (EXTRA_DIST): Add it.
2015-04-14 23:29:26 +02:00
Ludovic Courtès b607593533 hydra: Add jobs for the self-contained tarball.
* build-aux/hydra/gnu-system.scm (tarball-jobs): New procedure.
  (hydra-jobs): Use it.
2015-04-14 23:26:41 +02:00
Ludovic Courtès 890024c51c gnu: Don't use #:prefix in (gnu packages sdl).
* gnu/packages/sdl.scm: Remove #:prefix for (gnu packages fontutils)
  import, and adjust accordingly.  Add #:hide for (guix licenses)
  import.
2015-04-14 23:25:37 +02:00
Ludovic Courtès a0bcaefd08 Thank Pjotr. 2015-04-14 23:20:26 +02:00
Ludovic Courtès 9d3fb6c767 install: Add a procedure to build a self-contained binary tarball.
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>
at <http://lists.gnu.org/archive/html/guix-devel/2015-04/msg00229.html>.

* gnu/build/install.scm (populate-single-profile-directory): New procedure.
* gnu/system/install.scm (self-contained-tarball): New procedure.
* Makefile.am (guix-binary.%.tar.xz): New target.
2015-04-14 23:20:26 +02:00
Ludovic Courtès a84e523c4a build: Silence warnings about 'make' portability.
* configure.ac: Pass -Wno-portability to AM_INIT_AUTOMAKE.
2015-04-14 23:20:18 +02:00
Andreas Enge c3768fa49b gnu: calibre: Update to 2.23.0.
* gnu/packages/ebook.scm (calibre): Update to 2.23.0.
2015-04-14 20:00:55 +02:00
宋文武 04a20db2b3 gnu: gst-libav: Use system ffmpeg instead of bundled libav.
* gnu/packages/gstreamer.scm (gst-libav)[arguments]: Remove #:phases.
  Add #:configure-flags.
  [native-inputs]: Remove yasm.
  [inputs]: Add ffmpeg.
2015-04-14 23:03:05 +08:00
Mark H Weaver d5f01e48e0 guix package: Add '--do-not-upgrade' option.
* guix/scripts/package.scm (%options): Add the '--do-not-upgrade' option.
  (show-help): Document it.
  (options->installable): Add 'do-not-upgrade-regexps' variable.
  Use it in 'packages-to-upgrade'.
* doc/guix.texi (Invoking guix package): Document the '--do-not-upgrade'
  option.
2015-04-14 10:44:19 -04:00
Mark H Weaver 6915912506 gnu: Add mdadm.
* gnu/packages/linux.scm (mdadm): New variable.
2015-04-14 10:44:19 -04:00
Mark H Weaver 46a1130207 gnu: linux-libre: Remove linux-libre-vblank-fix.patch.
* gnu/packages/patches/linux-libre-vblank-fix.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (linux-libre): Remove patch.
2015-04-14 02:35:38 -04:00
David Thompson 463acb4acb gnu: ruby: Update to 2.2.2.
* gnu/packages/ruby.scm (ruby): Update to 2.2.2.
2015-04-13 19:56:01 -04:00
Ludovic Courtès 1bef37ee2e gnu: emacs: Do not keep references to the entries of the build-time $PATH.
This reduces the number of references of the output from 54 to 31,
removing references notably to gcc, expat, glib:bin, ld-wrapper-0,
texinfo, pkg-config, make, gawk, binutils, etc.

Reported by David Thompson.

* gnu/packages/patches/emacs-exec-path.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/emacs.scm (emacs)[source]: Use it.
2015-04-13 23:20:07 +02:00
Ricardo Wurmus 8214b7fbea gnu: rseqc: Update hash.
* gnu/packages/bioinformatics.scm (rseqc): Update hash.
2015-04-13 15:39:02 +02:00
Jason Self 2784a65af6 gnu: linux-libre: Update to 4.0
* gnu/packages/linux.scm (linux-libre): Update to version 4.0.
2015-04-13 05:57:50 -07:00
Ludovic Courtès 4c9050c63d doc: Add example showing how to customize 'nscd-service'.
* doc/guix.texi (Name Service Switch): Add link to nss-mdns.  Add
  example show how to pass #:name-services to 'nscd-service'.
  (Base Services): Add link from 'nscd-service' to the above.
* gnu/services/base.scm (nscd-service): Update docstring accordingly.
2015-04-12 22:34:47 +02:00
Ludovic Courtès 99af4996ea gnu: man-pages: Update to 3.82.
* gnu/packages/man.scm (man-pages): Update to 3.82.
2015-04-12 22:19:18 +02:00
Ludovic Courtès b158f1d751 system: Allow users to PTRACE_ATTACH to their own processes.
* gnu/build/activation.scm (activate-ptrace-attach): New procedure.
* gnu/system.scm (operating-system-activation-script): Use it.
2015-04-12 15:33:42 +02:00
Ludovic Courtès ce6fc7d6a5 build: Build and install (guix build-system haskell).
* Makefile.am (MODULES): Add guix/build-system/haskell.scm.
2015-04-12 15:16:48 +02:00
Mark H Weaver 4c2a38c25f gnu: emacs: Update to 24.5.
* gnu/packages/emacs.scm (emacs): Update to 24.5.
2015-04-10 15:20:22 -04:00
Mark H Weaver 5e738ac224 system: Clean /tmp and /var/run during early boot.
* gnu/system.scm (operating-system-boot-script): Clean out /tmp and
  /var/run before activating the system.
2015-04-10 09:22:49 -04:00
宋文武 1b922590d7 gnu: Add gst-libav.
* gnu/packages/gstreamer.scm (gst-libav): New variable.
2015-04-10 21:02:19 +08:00
Ricardo Wurmus 5854f6858b gnu: Add GRIT.
* gnu/packages/bioinformatics.scm (grit): New variable.
2015-04-10 14:35:48 +02:00
Ludovic Courtès ee3e157dec Add Bash completion file.
* etc/completion/bash/guix: New file.
* Makefile.am (dist_bashcompletion_DATA): New variable.
* configure.ac: Add --with-bash-completion-dir.
2015-04-09 23:44:14 +02:00
Ricardo Wurmus c833ab556f gnu: Add Shogun.
* gnu/packages/bioinformatics.scm (shogun): New variable.
2015-04-09 15:05:12 +02:00
Ludovic Courtès 0cc0095f3c http-client: Add workaround for HTTP pipelining on Guile <= 2.0.9.
Reported by Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>.

* guix/http-client.scm (make-delimited-input-port): New procedure.
  Install it in (web response) for Guile <= 2.0.9.
2015-04-08 21:41:04 +02:00
Ludovic Courtès 9bea87a542 activation: Remove undeclared user accounts and groups.
Fixes <http://bugs.gnu.org/19795>.
Reported by David Thompson <dthompson2@worcester.edu>.

* gnu/build/activation.scm (enumerate, current-users, current-groups,
  delete-user, delete-group): New procedures.
  (activate-users+groups): Add calls to 'delete-user' and
  'delete-group'.
* doc/guix.texi (User Accounts): Add a paragraph about statelessness.
  Explain that passwords are preserved.
2015-04-08 21:41:04 +02:00
Federico Beffa a231ef7eec gnu: Add ghc-http.
* gnu/packages/haskell.scm (ghc-http): New variable.
2015-04-08 17:31:13 +02:00
Federico Beffa 9ce031c57f gnu: Add ghc-network-uri.
* gnu/packages/haskell.scm (ghc-network-uri): New variable.
2015-04-08 17:31:13 +02:00
Federico Beffa abfed253e6 gnu: Add ghc-network.
* gnu/packages/haskell.scm (ghc-network): New variable.
2015-04-08 17:31:13 +02:00
Federico Beffa f50fc13815 gnu: Add ghc-vector.
* gnu/packages/haskell.scm (ghc-vector): New variable.
2015-04-08 17:31:13 +02:00
Federico Beffa fa468e879f gnu: Add ghc-parsec.
* gnu/packages/haskell.scm (ghc-parsec): New variable.
2015-04-08 17:31:13 +02:00
Federico Beffa d692228e8b gnu: Add ghc-split.
* gnu/packages/haskell.scm (ghc-split): New variable.
2015-04-08 17:31:13 +02:00
Federico Beffa 01a687da09 gnu: Add ghc-unordered-containers.
* gnu/packages/haskell.scm (ghc-unordered-containers): New variable.
2015-04-08 17:31:13 +02:00
Federico Beffa c5043f4aac gnu: Add ghc-fgl.
* gnu/packages/haskell.scm (ghc-fgl): New variable.
2015-04-08 17:31:13 +02:00
Federico Beffa 61c02099a3 gnu: Add ghc-containers.
* gnu/packages/haskell.scm (ghc-containers): New variable.
2015-04-08 17:31:12 +02:00
Federico Beffa eaa3088e2c gnu: Add ghc-syb.
* gnu/packages/haskell.scm (ghc-syb): New variable.
2015-04-08 17:31:12 +02:00
Federico Beffa 7a1e8c74a3 gnu: Add ghc-case-insensitive.
* gnu/packages/haskell.scm (ghc-case-insensitive): New variable.
2015-04-08 17:31:12 +02:00
Federico Beffa dc0ae39a8f gnu: Add ghc-quickcheck.
* gnu/packages/haskell.scm (ghc-quickcheck): New variable.
2015-04-08 17:31:12 +02:00
Federico Beffa c272160ab0 gnu: Add ghc-tf-random.
* gnu/packages/haskell.scm (ghc-tf-random): New variable.
2015-04-08 17:31:12 +02:00
Federico Beffa 4af803a7c0 gnu: Add ghc-primitive.
* gnu/packages/haskell.scm (ghc-primitive): New variable.
2015-04-08 17:31:12 +02:00
Federico Beffa df596b948d gnu: Add ghc-random.
* gnu/packages/haskell.scm (ghc-random): New variable.
2015-04-08 17:31:12 +02:00