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18475 Commits

Author SHA1 Message Date
Ludovic Courtès f1a892c96f
lint: Use the "@" syntax for versioned packages in warnings. 
* guix/scripts/lint.scm (emit-warning): Use the "@" syntax.
 2017-01-31 23:51:09 +01:00
Ludovic Courtès fae88ae884
gnu: mdadm: Update to 4.0. 
* gnu/packages/linux.scm (mdadm): Update to 4.0.
[arguments]: Add "CC=gcc" to #:make-flags.
 2017-01-31 23:48:59 +01:00
Ludovic Courtès 4fc6985c1c
gnu: parallel: Update to 20170122. 
* gnu/packages/parallel.scm (parallel): Update to 20170122.
 2017-01-31 23:46:34 +01:00
Ludovic Courtès 8555a609df
gnu: kbd: Update to 2.0.4. 
* gnu/packages/linux.scm (kbd): Update to 2.0.4.
 2017-01-31 23:45:56 +01:00
Ludovic Courtès c886608e6b
gnu: gdb: Update to 7.12.1. 
* gnu/packages/gdb.scm (gdb): Update to 7.12.1.
 2017-01-31 23:44:57 +01:00
Ludovic Courtès 5f8edd7f37
gnu: xcalc: Update to 1.0.6. 
* gnu/packages/xorg.scm (xcalc): Update to 1.0.6.
 2017-01-31 23:21:59 +01:00
Ludovic Courtès a43aca973e
system: Introduce 'file-systems' Shepherd service. 
* gnu/services/base.scm (file-system-shepherd-services): New procedure.
(file-system-service-type): Use it as the SHEPHERD-ROOT-SERVICE-TYPE
extension.
(user-processes-service-type): Change to take a single 'grace-delay'
parameter.
(user-processes-service): Remove 'file-systems' parameter.  Pass
GRACE-DELAY as the only value for the service.
* gnu/system.scm (essential-services): Adjust accordingly.
 2017-01-31 23:21:59 +01:00
Ludovic Courtès 2fe4ceee18
file-systems: Do not read superblocks past the end of a device. 
Fixes <http://bugs.gnu.org/25573>.
Reported by Alex Kost <alezost@gmail.com>.

* gnu/build/file-systems.scm (seek*): New procedure.
(read-superblock): Use it instead of 'seek' and ensure it returns
OFFSET.
 2017-01-31 23:21:59 +01:00
Raoul Jean Pierre Bonnal 69f2b3bdf9
gnu: Add r-rhdf5. 2017-01-31 22:35:11 +01:00
Raoul Jean Pierre Bonnal d4af25b51b
gnu: Add r-tximport. 2017-01-31 22:35:08 +01:00
Julien Lepiller f5c8cf3be7
gnu: Add ocaml-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-bin-prot): New variable.
 2017-01-31 21:35:51 +01:00
Julien Lepiller f95ebba516
gnu: Add ocaml-js-build-tools. 
* gnu/packages/ocaml.scm (ocaml-js-build-tools): New variable.
 2017-01-31 21:35:45 +01:00
Julien Lepiller 5eed45a8d7
gnu: Add ocaml-oasis. 
* gnu/packages/ocaml.scm (ocaml-oasis): New variable.
 2017-01-31 21:35:42 +01:00
Julien Lepiller 77a515e9b5
gnu: Add ocaml-fileutils. 
* gnu/packages/ocaml.scm (ocaml-fileutils): New variable.
 2017-01-31 21:35:38 +01:00
Julien Lepiller 3763eea716
gnu: Add ocaml-expect. 
* gnu/packages/ocaml.scm (ocaml-expect): New variable.
 2017-01-31 21:35:35 +01:00
Julien Lepiller f8a12de1cb
gnu: Add ocaml-pcre. 
* gnu/packages/ocaml.scm (ocaml-pcre): New variable.
 2017-01-31 21:35:32 +01:00
Julien Lepiller 0e9e94b7ff
gnu: Add ocaml-batteries. 
* gnu/packages/ocaml.scm (ocaml-batteries): New variable.
 2017-01-31 21:35:30 +01:00
Julien Lepiller 41e8e07919
gnu: Add omake. 
* gnu/packages/ocaml.scm (omake): New variable.
* gnu/packages/patches/omake-fix-non-determinism.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.
 2017-01-31 21:35:27 +01:00
Julien Lepiller c590f1ae8a
gnu: Add ocamlify. 
* gnu/packages/ocaml.scm (ocamlify): New variable.
 2017-01-31 21:35:23 +01:00
Julien Lepiller 5d08f98d3e
gnu: Add ocaml-base64. 
* gnu/packages/ocaml.scm (ocaml-base64): New variable.
 2017-01-31 21:34:53 +01:00
Thomas Danckaert 59ae241f71
gnu: Add xinetd. 
* gnu/packages/web.scm (xinetd): New variable.
* gnu/packages/patches/xinetd-CVE-2013-4342.patch,
gnu/packages/patches/xinetd-fix-fd-leak.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-31 15:06:19 -05:00
Ricardo Wurmus 9b11eee955
gnu: Add neovim. 
* gnu/packages/vim.scm (neovim): New variable.
 2017-01-31 21:01:53 +01:00
Ricardo Wurmus d9ed1779b8
gnu: Add lua5.2-lpeg. 
* gnu/packages/lua.scm (lua5.2-lpeg): New variable.
 2017-01-31 20:39:39 +01:00
Ricardo Wurmus cf9a788d93
gnu: Add lua5.2-bitop. 
* gnu/packages/lua.scm (lua5.2-bitop): New variable.
 2017-01-31 20:36:30 +01:00
Ricardo Wurmus 369ee96b69
gnu: Add lua5.2-libmpack. 
* gnu/packages/serialization.scm (lua5.2-libmpack): New variable.
 2017-01-31 20:36:09 +01:00
Ricardo Wurmus 8e664e7e55
gnu: Add lua-libmpack. 
* gnu/packages/serialization.scm (lua-libmpack): New variable.
 2017-01-31 20:35:54 +01:00
Ricardo Wurmus c57e5fd0c0
gnu: Add libmpack. 
* gnu/packages/serialization.scm (libmpack): New variable.
 2017-01-31 20:34:01 +01:00
Paul Garlick 8a4d14fa71
gnu: gmsh: Update to 2.16.0 
* gnu/packages/maths.scm (gmsh): Update to 2.16.0

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-31 17:55:50 +01:00
Ben Woodcroft abb7eb7aca
gnu: bundler: Update to 1.14.3. 
* gnu/packages/ruby.scm (bundler): Update to 1.14.3.
 2017-01-31 20:16:11 +10:00
ng0 249eb38965
gnu: tor: Add hardening configure-flags. 
* gnu/packages/tor.scm (tor)[arguments]: Add '--enable-expensive-hardening',
'enable-gcc-hardening', '--enable-linker-hardening' to configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-31 00:10:44 +01:00
Paul Garlick f18eded8ec
tests: Really skip /var/run/utmpx test when needed. 
* tests/syscalls.scm: Change 'test-ski' to 'test-skip'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-31 00:10:44 +01:00
Leo Famulari af7d72b16c
gnu: tcpdump: Update to 4.9.0 [security fixes]. 
Fixes CVE-2016-{7922,7923,7924,7925,7926,7927,7928,7929,7930,7931,7932,7933
7934,7935,7936,7937,7938,7939,7940,7973,7974,7975,7983,7984,7985,7986,7992,7993,
8574,8575} and CVE-2017-{5202,5203,5204,5205,5341,5342,5482,5483,5484,5485,
5486}.

* gnu/packages/admin.scm (tcpdump): Update to 4.9.0.
[source]: Add alternate URL and set the file-name.
 2017-01-30 15:51:32 -05:00
Leo Famulari df4a2b44d3
gnu: libpcap: Update to 1.8.1. 
* gnu/packages/admin.scm (libpcap): Update to 1.8.1.
 2017-01-30 14:49:42 -05:00
Marius Bakke 5a12bdaf8c
gnu: bitlbee: Update to 3.5.1 [security fixes]. 
* gnu/packages/messaging.scm (bitlbee): Update to 3.5.1.
[source]: Remove patches.
(%bitlbee-buddy-nick-change-patch): Remove.
(%bitlbee-always-use-nicks-patch): Remove.
 2017-01-30 19:48:09 +01:00
Marius Bakke d3c6ad0ab5
gnu: Add rocksdb. 
* gnu/packages/databases.scm (rocksdb): New variable.
 2017-01-30 16:52:29 +01:00
Marius Bakke d14ad134f1
gnu: xauth: Update to 1.0.10. 
* gnu/packages/xorg.scm (xauth): Update to 1.0.10.
 2017-01-30 16:17:43 +01:00
Marius Bakke 4a9c4a55ac
gnu: re2: Update to 2017-01-01. 
* gnu/packages/regex.scm (re2): Update to 2017-01-01.
[arguments]: End 'delete-static-library' phase on #t.
 2017-01-30 14:55:10 +01:00
Federico Beffa d8e85b2032
gnu: ghc-8: Update to 8.0.2. 
* gnu/packages/haskell.scm (ghc-8): Update to 8.0.2.
  [arguments]: Remove #:modules, #:imported-modules and phase
  configure-testsuite.
* gnu/packages/patches/ghc-dont-pass-linker-flags-via-response-files.patch:
  New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-01-30 14:39:35 +01:00
ng0 54052a54c1
gnu: Add reducelcs. 
* gnu/packages/maths.scm (reducelcs): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-01-30 07:46:28 -05:00
Mathieu Lirzin 8efc35a890
maint: Fix invalid calls to 'info'. 
* HACKING <Contributing>: Remove name of the manual from the item argument.
* README <Installation>: Likewise.
 2017-01-30 13:20:13 +01:00
Roel Janssen aa3eeeb542
gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5. 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
  New variable.
 2017-01-30 12:11:04 +01:00
José Miguel Sánchez García 01be4f939e
gnu: Add light. 
* gnu/packages/linux.scm (light): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-30 10:52:45 +01:00
Christopher Baines c003546b0c
environment: Fix setting writable? on networking related files 
* guix/scripts/environment.scm (launch-environment/container): Include the
  file name in the call to string=? when deciding if the file should be
  writable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-30 10:52:45 +01:00
José Miguel Sánchez García 83421fc744
gnu: Add font-awesome. 
* gnu/packages/fonts.scm (font-awesome): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-30 10:52:45 +01:00
Paul Garlick 5d4bd4cce1
gnu: Add opencascade-oce. 
* gnu/packages/maths.scm (opencascade-oce): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-30 10:52:45 +01:00
Ludovic Courtès 0d268c5d70
store: Add 'add-data-to-store'. 
* guix/serialization.scm (write-bytevector): New procedure.
(write-string): Rewrite in terms of 'write-bytevector'.
* guix/store.scm (write-arg): Add 'bytevector' case.
(add-data-to-store): New procedure, from former 'add-text-to-store'.
(add-text-to-store): Rewrite in terms of 'add-data-to-store'.
* tests/store.scm ("add-data-to-store"): New test.
 2017-01-30 10:52:45 +01:00
ng0 9016dbc2bb
gnu: Add catimg. 
* gnu/packages/image-viewers.scm (catimg): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-01-29 19:42:03 -05:00
Danny Milosavljevic 4fdcc5026f
gnu: Add dub. 
* gnu/packages/ldc.scm (dub): New variable.
 2017-01-29 23:46:33 +01:00
Leo Famulari 4bca1e7498
gnu: khal: Update to 0.9.1. 
* gnu/packages/calendar.scm (khal): Update to 0.9.1.
 2017-01-29 13:04:44 -05:00
Julien Lepiller 88ba7852d3
doc: Fix typo. 
* doc/guix.texi (ocaml-build-system): Replace ocaml with OCaml.
 2017-01-29 10:13:29 +01:00