231eddc88a
services: cuirass: Remove 'cuirass-service' procedure.
...
* gnu/services/cuirass.scm (<cuirass-configuration>)[specifications]:
Remove default value.
(cuirass-service): Remove.
* doc/guix.texi (Continuous Integration): Adjust accordingly.
2017-01-01 23:30:31 +01:00
8de938d59a
services: cuirass: Allow for gexps in specifications.
...
* gnu/services/cuirass.scm (<cuirass-configuration>)[specifications]:
Change default value to #~'().
(cuirass-shepherd-service): Remove conditional for "--specifications".
Use 'scheme-file' instead of 'plain-file'. Change file name to
"cuirass-specs.scm".
* doc/guix.texi (Continuous Integration): Change the example to use a
gexp where #:file refers to a file within Cuirass. Adjust
documentation.
2017-01-01 23:30:30 +01:00
7be13d0006
gnu: python-ndg-httpsclient: Use pypi-uri.
...
* gnu/packages/python.scm (python-ndg-httpsclient, python2-ndg-httpsclient)
[source]: Use pypi-uri.
2017-01-01 17:01:32 -05:00
5dbeccf5b4
gnu: diffoscope: Embed tool references.
...
Fixes <http://bugs.gnu.org/25315 >.
* gnu/packages/package-management.scm (diffoscope)[inputs]: Add
colordiff and vim.
[arguments]: Add "embed-tool-references" build phase to embed references
to "colordiff", "xxd", and "readelf".
2017-01-01 21:53:50 +01:00
ed88dd4512
gnu: mariadb: Update to 10.1.20.
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.20.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 14:51:04 -05:00
e63b19f509
gnu: mysql: Update to 5.7.17.
...
* gnu/packages/databases.scm (mysql): Update to 5.7.17.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01 14:45:23 -05:00
395bbfdbea
gnu: Add propeller-development-suite.
...
* gnu/packages/embedded.scm (propeller-development-suite): New variable.
2017-01-01 13:56:28 +01:00
3ebc86d9bd
gnu: Add spinsim.
...
* gnu/packages/embedded.scm (spinsim): New variable.
2017-01-01 13:56:28 +01:00
0a7860c438
gnu: Add spin2cpp.
...
* gnu/packages/embedded.scm (spin2cpp): New variable.
2017-01-01 13:56:28 +01:00
c6b96af794
gnu: Add propeller-load.
...
* gnu/packages/embedded.scm (propeller-load): New variable.
2017-01-01 13:56:28 +01:00
150e0a1ec6
gnu: Add openspin.
...
* gnu/packages/embedded.scm (openspin): New variable.
2017-01-01 13:56:27 +01:00
eb88fbafcd
gnu: Add propeller-toolchain.
...
* gnu/packages/embedded.scm (propeller-toolchain): New variable.
2017-01-01 13:56:27 +01:00
0d0079b2c5
gnu: Add proplib.
...
* gnu/packages/embedded.scm (proplib): New variable.
2017-01-01 13:56:27 +01:00
68cb27840e
gnu: Add propeller-gcc.
...
* gnu/packages/embedded.scm (propeller-gcc): New variable.
2017-01-01 13:56:27 +01:00
2d7c92134e
gnu: Add propeller-binutils.
...
* gnu/packages/embedded.scm (propeller-binutils): New variable.
2017-01-01 13:56:27 +01:00
6f5b1c9107
gnu: Add dummy linker for propeller-elf.
...
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for
propeller-elf.
2017-01-01 13:56:27 +01:00
c26ba570cc
gnu: clisp: Remove timestamps.
...
* gnu/packages/lisp.scm (clisp)[arguments]: Add "remove-timestamps"
phase to remove "__DATE__" and "__TIME__".
2017-01-01 13:55:50 +01:00
636c77d066
gnu: clisp: Use modify-phases syntax.
...
* gnu/packages/lisp.scm (clisp)[arguments]: Use modify-phases syntax.
2017-01-01 13:55:50 +01:00
c50dc711a1
gnu: manaplus: Update to 1.6.12.24.
...
* gnu/packages/games.scm (manaplus): Update to 1.6.12.24.
2017-01-01 11:47:08 +03:00
25d84d3122
gnu: python-dendropy: Update to 4.2.0.
...
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0.
[source]: Remove patch.
(python2-dendropy)[source]: Use the same source as python-dendropy.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-01-01 16:47:47 +10:00
322a583fcf
gnu: diamond: Update to 0.8.31.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.31.
2017-01-01 16:47:47 +10:00
7fc2d377d1
gnu: nagios: Update to 4.2.4 [fixes CVE-2016-{9565,9566}].
...
* gnu/packages/monitoring.scm (nagios): Update to 4.2.4.
[native-inputs]: New field.
2016-12-31 20:02:59 +01:00
b13a5b4d16
gnu: python-graphql-relay: Update to 0.4.5.
...
* gnu/packages/python.scm (python-graphql-relay): Update to 0.4.5.
2016-12-31 16:51:56 +01:00
0c315fb394
gnu: python-freezegun: Update to 0.3.8.
...
* gnu/packages/python.scm (python-freezegun): Update to 0.3.8.
2016-12-31 16:51:56 +01:00
234ade2d7b
gnu: python-ply: Update to 3.9.
...
* gnu/packages/python.scm (python-ply): Update to 3.9.
[source]: Use pypi-uri.
2016-12-31 16:51:55 +01:00
ab0c342924
gnu: python-pyquery: Update to 1.2.17.
...
* gnu/packages/python.scm (python-pyquery): Update to 1.2.17.
2016-12-31 16:51:55 +01:00
42734b9a88
gnu: python-click-log: Update to 0.1.8.
...
* gnu/packages/python.scm (python-click-log): Update to 0.1.8.
2016-12-31 16:51:54 +01:00
ae476d01da
gnu: python-ndg-httpsclient: Update to 0.4.2.
...
* gnu/packages/python.scm (python-ndg-httpsclient): Update to 0.4.2.
2016-12-31 16:51:54 +01:00
f165648e1b
gnu: python-ipykernel: Update to 4.5.2.
...
* gnu/packages/python.scm (python-ipykernel): Update to 4.5.2.
2016-12-31 16:51:53 +01:00
45cc957c72
gnu: python-jupyter-core: Update to 4.2.1.
...
* gnu/packages/python.scm (python-jupyter-core): Update to 4.2.1.
2016-12-31 16:51:53 +01:00
594358f5b6
gnu: python2-fastlmm: Update to 0.2.26.
...
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.26.
2016-12-31 16:51:40 +01:00
a5f92ca04f
gnu: python-pytz: Update to 2016.10.
...
* gnu/packages/python.scm (python-pytz): Update to 2016.10.
2016-12-31 16:36:20 +01:00
bf5e4bc42a
gnu: python-pyyaml: Update to 3.12.
...
* gnu/packages/python.scm (python-pyyaml): Update to 3.12.
[source]: Use pypi-uri.
2016-12-31 15:27:24 +01:00
7d2e758df5
gnu: python-pygments: Update to 2.1.3.
...
* gnu/packages/python.scm (python-pygments): Update to 2.1.3.
2016-12-31 15:27:23 +01:00
c055a37c8c
gnu: tiled: Update to 0.18.0.
...
* gnu/packages/game-development.scm (tiled): Update to 0.18.0.
2016-12-30 21:45:51 -05:00
da62a4a19e
gnu: mc: Partially fix absolute file paths.
...
Partially fixes <http://bugs.gnu.org/25273 >.
* gnu/packages/mc.scm (mc)[arguments]: Add new phase 'fix-absolutism.
This substitutes absolute file paths with functional file paths.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-31 01:44:04 +01:00
0f391063d9
gnu: pius: Update to 2.2.2-0.891687c.
...
* gnu/packages/gnupg.scm (pius): Update to 2.2.2-0.891687c.
[inputs]: Change GNUPG-2.0 to GNUPG (2.1).
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-31 01:44:04 +01:00
68415aa4e1
gnu: libtermkey: Update to 0.19.
...
* gnu/packages/terminals.scm (libtermkey): Update to 0.19.
Co-authored-by: Leo Famulari <leo@famulari.name>
2016-12-30 16:15:25 -05:00
858b9afeaf
gnu: libpng: Mention CVE-2016-10087.
...
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: Rename to ...
* gnu/packages/patches/libpng-CVE-2016-10087.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust.
* gnu/packages/image.scm (libpng/fixed)[source]: Use renamed patch.
2016-12-30 14:33:21 -05:00
4037e5f52b
gnu: linux-libre@4.1: Update to 4.1.37.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.37.
2016-12-30 04:26:11 -05:00
a29929b32c
gnu: multiqc: Update to 0.9.
...
Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>.
* gnu/packages/bioinformatics.scm (multiqc): Update to 0.9.
[origin]: Add patch.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-12-30 17:22:43 +10:00
95d7d0c57f
gnu: elogind: Enable ACL support.
...
* gnu/packages/freedesktop.scm (elogind) [inputs]: Add acl.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-29 23:42:23 +01:00
3547a5effe
services: Add libmtp's udev rules to '%desktop-services'.
...
Suggested by Chris Marusich <cmmarusich@gmail.com>.
* gnu/services/desktop.scm (%desktop-services): Add 'mtp' service via
call to 'simple-service'.
2016-12-29 23:35:42 +01:00
87b5209558
gnu: mpd: Install systemd service files.
...
* gnu/packages/mpd.scm (mpd)[arguments]: Add 'install-service-files' phase.
2016-12-29 17:28:34 -05:00
76b64381cb
gnu: r-genomicfeatures: Update to 1.26.2.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2.
2016-12-29 22:24:12 +01:00
2f642e5229
gnu: r-biostrings: Update to 2.42.1.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1.
2016-12-29 22:24:11 +01:00
72c2693b9e
gnu: r-limma: Update to 3.30.7.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7.
2016-12-29 22:24:11 +01:00
5796af9981
gnu: r-variantannotation: Update to 1.20.2.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2.
2016-12-29 22:24:11 +01:00
5d3acc0b36
gnu: r-edger: Update to 3.16.5.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5.
2016-12-29 22:24:11 +01:00
81a17b61e7
gnu: r-genomeinfodb: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1.
2016-12-29 22:24:11 +01:00
Ludovic Courtès