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13999 Commits

Author SHA1 Message Date
Efraim Flashner cf4a71322b
gnu: perl-test-deep: Update to 1.120. 
* gnu/packages/perl.scm (perl-test-deep): Update to 1.120.
[home-page]: Update it.
 2016-06-14 14:31:58 +03:00
Efraim Flashner 54c3c140ce
gnu: perl-xml-libxml: Update to 2.0125. 
* gnu/packages/xml.scm (perl-xml-libxml): Update to 2.0125.
 2016-06-14 14:29:03 +03:00
Efraim Flashner e831256ff5
gnu: perl-xml-simple: Update to 2.22. 
* gnu/packages/xml.scm (perl-xml-simple): Update to 2.22.
[propagated-inputs]: Add perl-xml-sax.
[home-page]: Update it.
 2016-06-14 14:08:07 +03:00
Ludovic Courtès 28206a8ebf
gnu: automake: Adjust test to ignore new gzip warnings. 
* gnu/packages/patches/automake-test-gzip-warning.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-14 09:41:38 +02:00
Efraim Flashner d0d2b0f9cd
gnu: parallel: Update to 20160522. 
* gnu/packages/parallel.scm (parallel): Update to 20160522.
 2016-06-14 10:08:14 +03:00
Alex Vong feb5c55403
gnu: youtube-dl: Update to 2016.06.14. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.06.14.
[source]: Use https.
[home-page]: Use https.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-06-14 09:07:02 +03:00
David Thompson 32ac717c5f gnu: Add gnome-shell-extensions. 
* gnu/packages/gnome.scm (gnome-shell-extensions): New variable.
 2016-06-13 19:22:54 -04:00
Ben Woodcroft e4a44a6aa5
gnu: Add ruby-bio-kseq. 
* gnu/packages/bioinformatics.scm (ruby-bio-kseq): New variable.
 2016-06-14 07:57:09 +10:00
Ludovic Courtès d3ef652aa1
gnu: wget: Update to 1.18. 
* gnu/packages/wget.scm (wget): Update to 1.18.
 2016-06-13 23:13:16 +02:00
Efraim Flashner 65089213c8
gnu: wayland: Update to 1.11.0. 
* gnu/packages/freedesktop.scm (wayland): Update to 1.11.0.
 2016-06-13 22:37:35 +03:00
Efraim Flashner c6bccf713b
gnu: python-pykafka: Change uri. 
* gnu/packages/python.scm (python-pykafka)[source]: Update pypi uri.
 2016-06-13 21:31:13 +03:00
Nicolas Goaziou 2fb3dddabf
gnu: giac-xcas: Update to 1.2.2-59 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-59.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-13 18:05:54 +02:00
Nicolas Goaziou 2e2c6e9655
gnu: asymptote: Update to 2.38 
* gnu/packages/plotutils.scm (asymptote): Update to 2.38.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-13 18:05:54 +02:00
Ludovic Courtès c25637dfe8
utils: 'with-atomic-file-output' closes the port upon exception. 
Previously it could have left the file descriptor open.

* guix/utils.scm (with-atomic-file-output): Call 'close-port' in handler.
 2016-06-13 18:05:54 +02:00
Ludovic Courtès d1f33ba44b
syscalls: Use 'syscall->procedure' everywhere. 
* guix/build/syscalls.scm (mkdtemp!, setns, %ioctl, network-interfaces):
(free-ifaddrs): Use 'syscall->procedure'.
 2016-06-13 18:05:54 +02:00
Ludovic Courtès 1752a17a1e
utils: 'with-atomic-file-output' calls 'fdatasync'. 
Suggested by Danny Milosavljevic <dannym@scratchpost.org>
at <https://lists.gnu.org/archive/html/guix-devel/2016-06/msg00456.html>.

* guix/build/syscalls.scm (fdatasync): New procedure.
* guix/utils.scm (with-atomic-file-output): Use it.  Use 'close-port'
instead of 'close'.
 2016-06-13 18:05:54 +02:00
Ricardo Wurmus 9f8ee3fe0e
gnu: Add python-tables. 
* gnu/packages/python.scm (python-tables, python2-tables): New
  variables.
 2016-06-13 18:01:02 +02:00
Ludovic Courtès 9f44dfc077
build: Update list of libxslt patches. 
* gnu/local.mk (dist_patch_DATA): Remove libxslt-CVE-2015-7995.patch,
unneeded since 28b33172c9.
Re-add libxslt-generated-ids.patch.
 2016-06-13 13:33:32 +02:00
Ricardo Wurmus 883302daf2
gnu: piranha: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (piranha): Update to 1.2.1.
 2016-06-13 11:53:38 +02:00
Ludovic Courtès 809f17628f
gnu: swig: Adjust to pcre output split. 
This fixes a regression introduced in
commit 6d49ca3bad.

* gnu/packages/swig.scm (swig)[native-inputs]: Add pcre:bin.
[inputs]: Remove pcre.
 2016-06-13 09:42:55 +02:00
Leo Famulari 28b33172c9
gnu: libxslt: Update to 1.1.29. 
* gnu/packages/patches/libxslt-CVE-2015-7995.patch,
gnu/packages/patches/libxslt-remove-date-timestamps.patch: Delete files.
* gnu/packages/xml.scm: Update to 1.1.29.
[source]: Remove patches.
 2016-06-12 22:09:39 -04:00
Leo Famulari ee86e7e148
Merge branch 'master' into core-updates 2016-06-12 22:09:26 -04:00
Ludovic Courtès fe585be9aa
serialization: Add #:select? parameter to 'write-file'. 
* guix/serialization.scm (write-file): Add #:select? parameter and honor it.
* tests/nar.scm ("write-file #:select? + restore-file"): New test.
 2016-06-12 23:55:22 +02:00
Orivej Desh 31d968fbcf
gnu: unison: Install unison-fsmonitor. 
* gnu/packages/ocaml.scm (unison)[arguments]: Add 'install-fsmonitor'
phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-12 23:55:16 +02:00
Ludovic Courtès 4d4c3614c8
profiles: Make sure hook derivations fail upon error. 
Reported at
<https://lists.gnu.org/archive/html/guix-devel/2016-06/msg00368.html>.

* guix/profiles.scm (info-dir-file)[build]: Add explicit call to
'exit'.
* guix/profiles.scm (ghc-package-cache-file)[build]: Likewise.
* guix/profiles.scm (xdg-desktop-database)[build]: Likewise.
* guix/profiles.scm (xdg-mime-database)[build]: Likewise.
 2016-06-12 23:54:00 +02:00
Ludovic Courtès 52530805b3
doc: Fix default value of #:recursive? for 'local-file'. 
* doc/guix.texi (G-Expressions): The #:recursive? parameter of
'local-file' defaults to #f.
 2016-06-12 23:54:00 +02:00
Roel Janssen d95e8e0170
gnu: Add emacs-rainbow-identifiers. 
* gnu/packages/emacs.scm (emacs-rainbow-identifiers): New variable.
 2016-06-12 23:37:12 +02:00
Leo Famulari 6e46836c76
gnu: imagemagick: Update to 6.9.4-9. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-9.
 2016-06-12 16:04:22 -04:00
Alex Kost 11b8e66a4c
gnu: manaplus: Update to 1.6.6.4. 
* gnu/packages/games.scm (manaplus): Update to 1.6.6.4.
 2016-06-12 17:43:48 +03:00
David Thompson 6fd8f8d6fc gnu: Add arc-icon-theme. 
* gnu/packages/gnome.scm (arc-icon-theme): New variable.
 2016-06-11 21:21:16 -04:00
David Thompson 9987c57c74 gnu: Add moka-icon-theme. 
* gnu/packages/gnome.scm (moka-icon-theme): New variable.
 2016-06-11 21:21:16 -04:00
David Thompson 813f814a29 gnu: Add arc-theme. 
* gnu/packages/gnome.scm (arc-theme): New variable.
 2016-06-11 21:21:16 -04:00
Leo Famulari 1d4f0994f2
gnu: wireshark: Update to 2.0.4 [security fixes]. 
Fixes CVE-2016-{5350, 5351, 5352, 5353, 5354, 5355, 5356, 5357, 5358, 5359}.

* gnu/packages/networking.scm (wireshark): Update to 2.0.4.
 2016-06-11 20:02:07 -04:00
ng0 bb88a9a976
gnu: libmicrohttpd: Update to 0.9.50. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.50.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-06-11 19:35:12 -04:00
Leo Famulari b414c115d8
gnu: signify: Update to 18. 
* gnu/packages/crypto.scm (signify): Update to 18.
 2016-06-11 18:54:37 -04:00
Taylan Ulrich Bayırlı/Kammer 6b741f6898 gnu: higan: Update to v099. 
This release removes the "balanced" emulation core (aka profile).
 2016-06-12 01:31:16 +03:00
Ricardo Wurmus 945939a5b4
gnu: gnucash: Add support for AqBanking. 
* gnu/packages/gnucash.scm (gnucash)[inputs]: Add aqbanking.
[arguments]: Add configure flag to enable aqbanking.
 2016-06-11 16:52:51 +02:00
Ricardo Wurmus 445aa13753
gnu: Add AqBanking. 
* gnu/packages/gnucash.scm (aqbanking): New variable.
 2016-06-11 16:52:51 +02:00
Ricardo Wurmus 5c881f3211
gnu: Add gwenhywfar. 
* gnu/packages/gnucash.scm (gwenhywfar): New variable.
 2016-06-11 16:07:08 +02:00
Ricardo Wurmus e4aab73487
gnu: xmlsec: Enable gnutls support. 
* gnu/packages/xml.scm (xmlsec)[native-inputs]: Add pkg-config.
 2016-06-11 16:07:08 +02:00
Ricardo Wurmus c71c8b97a2
gnu: gnucash: Add "license:" prefix. 
* gnu/packages/gnucash.scm: Import licenses with "license:" prefix.
(gnucash)[license]: Add prefix.
 2016-06-11 16:07:08 +02:00
宋文武 45dda35eed
gnu: Add python-pykafka and python2-pykafka. 
* gnu/packages/python.scm (python-pykafka, python2-pykafka): New variables.
 2016-06-11 12:53:09 +08:00
宋文武 1c4c8a33d7
gnu: Add python-kazoo and python2-kazoo. 
* gnu/packages/python.scm (python-kazoo, python2-kazoo): New variables.
 2016-06-11 12:53:09 +08:00
宋文武 d951bd547c
gnu: Add python-tabulate and python2-tabulate. 
* gnu/packages/python.scm (python-tabulate, python2-tabulate): New variables.
 2016-06-11 12:53:09 +08:00
宋文武 2c1286f48b
gnu: Add librdkafka. 
* gnu/packages/networking.scm (librdkafka): New variable.
 2016-06-11 12:53:09 +08:00
Peter 59befb7f31
gnu: fish: Update to 2.3.0. 
* gnu/packages/fish.scm (fish): Update to 2.3.0.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-06-11 12:53:09 +08:00
Leo Famulari 45de649a56
gnu: git: Update to 2.8.4. 
* gnu/packages/version-control.scm (git): Update to 2.8.4.
(git-manpages)[source]: Update hash.
 2016-06-10 23:16:53 -04:00
宋文武 963521a380
profiles: manifest-lookup-package: Correctly handle package entries. 
* guix/profiles.scm (manifest-lookup-package): Consider the package entry
in addition to its 'package-transitive-inputs'.
 2016-06-11 11:05:18 +08:00
宋文武 359f06aac8
profiles: xdg-mime-database: Union the "share/mime/packages" directory. 
* guix/profiles.scm (xdg-mime-database): Call 'union-build' for the
"share/mime/packages" directory of inputs.
 2016-06-11 11:03:31 +08:00
Leo Famulari 436dd04636
gnu: expat: Fix CVE-2012-6702 and CVE-2016-5300. 
* gnu/packages/patches/expat-CVE-2012-6702-and-CVE-2016-5300.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (expat/fixed): Use it.
 2016-06-10 20:33:45 -04:00