27ec9624ca
gnu: ncurses: Add "doc" output.
...
* gnu/packages/ncurses.scm (ncurses)[outputs]: New field.
[arguments] <configure>: Replace standard 'configure' phase.
<remove-shebang-phase>: Remove "mandir=" line from 'ncursesw6-config'.
2015-12-15 23:02:51 +01:00
de6d9f4553
gnu: ncurses: Add 'TERMINFO_DIRS' search path variable.
...
* gnu/packages/ncurses.scm (ncurses)[native-search-paths]: New field.
2015-12-15 22:27:31 +01:00
4d28b97c46
gnu: bash: Add "doc" output.
...
* gnu/packages/bash.scm (bash)[outputs]: Add "doc" output.
2015-12-15 22:22:59 +01:00
304e4f5135
gnu: grep: Add missing dependency on Perl.
...
* gnu/packages/base.scm (grep)[native-inputs]: New field.
* gnu/packages/commencement.scm (grep-final): Likewise.
2015-12-15 18:04:28 +01:00
a2a9bba43c
gnu: bash: Update to patch level 42.
...
* gnu/packages/bash.scm (%patch-series-4.3): Add patches 40 to 42.
2015-12-15 17:59:49 +01:00
775e6fe456
gnu: commencement: Initial Texinfo uses initial Perl.
...
* gnu/packages/commencement.scm (texinfo-boot0)[inputs]: Use
PERL-BOOT0.
2015-12-13 11:35:53 +01:00
4187fe750f
gnu: perl: Build deterministically, and make byproducts deterministic.
...
With this, a --rounds=2 build passes, and timestamps in POD files can be
controlled with 'SOURCE_DATE_EPOCH'.
* gnu/packages/patches/perl-deterministic-ordering.patch,
gnu/packages/patches/perl-no-build-time.patch,
gnu/packages/patches/perl-source-date-epoch.patch: New files.
* gnu/packages/perl.scm (perl)[source]: Use them.
* gnu-system.am (dist_patch_DATA): Add them.
2015-12-13 11:28:54 +01:00
4de3507483
gnu: perl: Update to 5.22.0.
...
* gnu/packages/perl.scm (perl)[source]: Update to 5.22.0. Remove
"perl-module-pluggable-search.patch" since Module::Pluggable appears to
be gone.
[arguments] <configure-phase>: Adjust Cwd.pm file name. Replace
-std=c89 with -std=gnu89.
* gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads'
phase.
* gnu/packages/patches/perl-no-sys-dirs.patch: Update.
* gnu/packages/patches/perl-module-pluggable-search.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
2015-12-13 11:28:54 +01:00
4165fda29d
gnu: gmp: Disable parallel tests.
...
* gnu/packages/multiprecision.scm (gmp)[arguments]: Disable parallel tests.
2015-12-12 14:40:37 +01:00
7dda44a6b9
build: Add missing patches to the distribution.
...
* gnu-system.am (dist_patch_DATA): Add glibc-hurd-extern-inline.patch
and plink-1.07-unclobber-i.patch.
2015-12-12 11:50:59 +01:00
e82e55e58c
Merge branch 'master' into core-updates
2015-12-12 11:48:46 +01:00
e35dff9733
gnu: numactl: Update to 2.0.11.
...
* gnu/packages/linux.scm (numactl)[source]: Update to 2.0.11.
[native-inputs]: Drop autotools.
[arguments]: Drop phase calling autogen.sh.
2015-12-12 10:20:30 +01:00
798697f673
gnu: wget: Update to 1.17.1.
...
* gnu/packages/wget.scm (wget): Update to 1.17.1.
2015-12-11 18:31:50 -05:00
98bd851ee8
gnu: gcc: Use the system zlib.
...
* gnu/packages/gcc.scm (gcc-4.7) <configure-flags>: Pass
'--with-system-zlib'.
* gnu/packages/commencement.scm (gcc-boot0)[arguments]: Remove
'--with-system-zlib' from the configure flags.
* gnu/packages/commencement.scm (zlib-final): New variable.
(gcc-final)[arguments]: Add ZLIB-FINAL to #:allowed-references.
Pass -L and -Wl,-rpath for zlib in LDFLAGS, as a configure flag.
[inputs]: Add LD-WRAPPER-BOOT3 and ZLIB-FINAL.
2015-12-11 23:49:10 +01:00
52cfd8cb54
gnu: gcc-final: Remove unnecessary CPPFLAGS.
...
* gnu/packages/commencement.scm (gcc-final)[arguments]: Remove
unnecessary CPPFLAGS from #:make-flags.
2015-12-11 23:42:39 +01:00
f7f55db8f6
gnu: Move sparsehash to datastructures module.
...
* gnu/packages/crypto.scm (sparsehash): Move variable to...
* gnu/packages/datastructures.scm: ...new file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-12-11 15:59:20 +01:00
ca3476cd6c
gnu: Add r-lattice.
...
* gnu/packages/statistics.scm (r-lattice): New variable.
2015-12-11 15:44:07 +01:00
2a40f76389
gnu: Add r-gridbase.
...
* gnu/packages/statistics.scm (r-gridbase): New variable.
2015-12-11 15:44:07 +01:00
60a9d3d0ac
gnu: Add r-plotrix.
...
* gnu/packages/statistics.scm (r-plotrix): New variable.
2015-12-11 15:44:07 +01:00
03af370f6e
gnu: Add r-readr.
...
* gnu/packages/statistics.scm (r-readr): New variable.
2015-12-11 15:44:07 +01:00
62141c07f7
gnu: Rename r-data.table to r-data-table.
...
* gnu/packages/statistics.scm (r-data.table): Rename variable ...
(r-data-table): ... to this.
[description]: Clarify relation to data.frame.
[license]: Use correct license.
2015-12-11 15:44:07 +01:00
0f6b9e9828
import: cran: Parse DESCRIPTION instead of HTML.
...
* guix/import/cran.scm (description->alist, listify,
beautify-description, description->package): New procedures.
(table-datum, downloads->url, nodes->text, cran-sxml->sexp): Remove
proceduces.
(latest-release): Use parsed DESCRIPTION instead of SXML.
* tests/cran.scm: Rewrite to match importer.
2015-12-11 15:35:07 +01:00
b6a222757b
import: cran: Match more license strings.
...
* guix/import/cran.scm (string->license): Match more license strings to
license symbols.
2015-12-11 15:35:07 +01:00
5f7e17bef7
gnu: Add snap-aligner.
...
* gnu/packages/bioinformatics.scm (snap-aligner): New variable.
2015-12-11 14:34:51 +01:00
9a41f4439d
gnu: python-certifi: Update to 2015.11.20.1.
...
* gnu/packages/python.scm (python-certifi): Update to 2015.11.20.1.
[source]: Change to pypi syntax.
2015-12-11 15:12:39 +02:00
2e4c54573f
gnu: gnumeric: Add python scripting support.
...
* gnu/packages/gnome.scm (gnumeric): Do it.
[inputs]: Add python2, python2-pygobject-2.
2015-12-11 14:18:10 +02:00
7bcbd40dc8
gnu: gnumeric: Update to 1.12.24.
...
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.24.
[inputs]: Add librsvg, libxslt.
[arguments]: Use "modify-phases" syntax.
2015-12-11 14:18:10 +02:00
8cabd349b4
gnu: goffice: Update to 0.10.24.
...
* gnu/packages/gnome.scm (goffice): Update to 0.10.24.
2015-12-11 14:18:10 +02:00
24a78aa600
gnu: gvfs: Update to 1.26.2.
...
* gnu/packages/gnome.scm (gvfs): Update to 1.26.2.
[inputs]: Add gcr.
2015-12-11 14:18:10 +02:00
98f4a9004b
emacs: Handle compiled autoloads.
...
* emacs/guix-emacs.el (guix-emacs-autoloads-regexp): New variable.
(guix-emacs-find-autoloads-in-directory): Return a list of autoloads
without extensions.
2015-12-11 14:34:03 +03:00
7534370435
gnu: linux-libre: Update to 4.3.2.
...
* gnu/packages/linux.scm (linux-libre): Update to 4.3.2.
[native-inputs]: Add openssl.
* gnu/packages/linux-libre-x86_64.conf,
gnu/packages/linux-libre-i686.conf: Update for 4.3.x,
based on <https://jxself.org/git/kernel-configs.git >.
2015-12-11 00:30:38 -05:00
5d69165797
gnu: python-requests: Update to 2.8.1.
...
* gnu/packages/python.scm (python-requests): Update to 2.8.1.
[native-inputs]: Move python-setuptools here.
[inputs]: Remove python-certifi.
[propagated-inputs]: Add python-py, python-pytest, python-pytest-cov,
python-wheel.
[arguments]: Enable tests.
2015-12-10 20:24:11 +02:00
addc808ddc
gnu: Add python-wheel.
...
* gnu/packages/python.scm (python-wheel, python2-wheel): New variables.
2015-12-10 20:24:11 +02:00
358c3d612b
gnu: Add python-pytest-cov.
...
* gnu/packages/python.scm (python-pytest-cov, python2-pytest-cov): New
variables.
2015-12-10 20:24:11 +02:00
e522d84035
gnu: Add libconfig.
...
* gnu/packages/textutils.scm (libconfig): New variable.
2015-12-10 16:27:50 +01:00
b01bbbcf3d
gnu: python-pytz: Update to 2015.7.
...
* gnu/packages/python.scm (python-pytz): Update to 2015.7.
[source]: Change uri to pypi's location.
[home-page]: Change to new website.
[license]: Change to expat.
2015-12-10 16:09:16 +02:00
16414017f3
gnu: ghc-cryptonite: Update description.
...
* gnu/packages/haskell.scm (ghc-cryptonite)[description]: Shorten overly
technical package description.
2015-12-10 14:40:18 +01:00
e815c094f7
gnu: python-biopython, python2-biopython: Update to 1.66.
...
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): Update to 1.66.
[source]: Use PyPi instead of biopython.org.
2015-12-10 14:35:56 +01:00
85538709f1
gnu: Add ghc-pandoc.
...
* gnu/packages/haskell.scm (ghc-pandoc): New variable.
2015-12-10 14:34:51 +01:00
ac2607a0ce
gnu: Add ghc-http-client-tls.
...
* gnu/packages/haskell.scm (ghc-http-client-tls): New variable.
2015-12-10 14:34:51 +01:00
86dd2ce0b2
gnu: Add ghc-connection.
...
* gnu/packages/haskell.scm (ghc-connection): New variable.
2015-12-10 14:34:51 +01:00
dcc5cf1d41
gnu: Add ghc-socks.
...
* gnu/packages/haskell.scm (ghc-socks): New variable.
2015-12-10 14:34:51 +01:00
4f7f06e1a2
gnu: Add ghc-tls.
...
* gnu/packages/haskell.scm (ghc-tls): New variable.
2015-12-10 14:34:51 +01:00
f664cbb3bf
gnu: Add ghc-x509-system.
...
* gnu/packages/haskell.scm (ghc-x509-system): New variable.
2015-12-10 14:34:51 +01:00
1c649948c9
gnu: Add ghc-x509-validation.
...
* gnu/packages/haskell.scm (ghc-x509-validation): New variable.
2015-12-10 14:34:51 +01:00
282f11420b
gnu: Add ghc-x509-store.
...
* gnu/packages/haskell.scm (ghc-x509-store): New variable.
2015-12-10 14:34:51 +01:00
e24e053eda
gnu: Add ghc-x509.
...
* gnu/packages/haskell.scm (ghc-x509): New variable.
2015-12-10 14:34:51 +01:00
4dc2deb920
gnu: Add ghc-memory.
...
* gnu/packages/haskell.scm (ghc-memory): New variable.
2015-12-10 14:34:51 +01:00
2763952b9c
gnu: Add ghc-cryptonite.
...
* gnu/packages/haskell.scm (ghc-cryptonite): New variable.
2015-12-10 14:34:51 +01:00
76e2fa7529
gnu: Add ghc-tasty-kat.
...
* gnu/packages/haskell.scm (ghc-tasty-kat): New variable.
2015-12-10 14:34:51 +01:00
Ludovic Courtès