Mark H Weaver
eb07a6f898
gnu: linux-libre: Update to 4.18.7.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.7.
(%linux-libre-hash): Update hash.
2018-09-10 13:25:54 -04:00
Mark H Weaver
c727ed05ac
gnu: linux-libre@4.14: Update to 4.14.69.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.69.
(%linux-libre-4.14-hash): Update hash.
2018-09-10 13:24:01 -04:00
Mark H Weaver
176999f18e
gnu: linux-libre@4.9: Update to 4.9.126.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.126.
2018-09-10 13:23:20 -04:00
Mark H Weaver
d7e9bd15fa
gnu: linux-libre@4.4: Update to 4.4.155.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.155.
2018-09-10 13:22:35 -04:00
Tobias Geerinckx-Rice
98184e566c
gnu: gnome-mpv: Update to 0.15.
...
* gnu/packages/video.scm (gnome-mpv): Update to 0.15.
2018-09-10 18:22:00 +02:00
Tobias Geerinckx-Rice
37a2ea118d
gnu: fortify-headers: Update to 1.0.
...
* gnu/packages/suckless.scm (fortify-headers): Update to 1.0.
2018-09-10 18:22:00 +02:00
Tobias Geerinckx-Rice
7c8b1bf664
gnu: python-genshi: Update to 0.7.1.
...
* gnu/packages/python-web.scm (python-genshi): Update to 0.7.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME. Remove patches.
* gnu/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch,
gnu/packages/patches/python-genshi-buildable-on-python-2.7.patch,
gnu/packages/patches/python-genshi-disable-speedups-on-python-3.3.patch,
gnu/packages/patches/python-genshi-fix-tests-on-python-3.5.patch,
gnu/packages/patches/python-genshi-isstring-helper.patch,
gnu/packages/patches/python-genshi-stripping-of-unsafe-script-tags.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-09-10 18:21:59 +02:00
Tobias Geerinckx-Rice
83397e0786
gnu: python-sockjs-tornado: Update to 1.0.5.
...
* gnu/packages/python-web.scm (python-sockjs-tornado): Update to 1.0.5.
2018-09-10 18:21:59 +02:00
Tobias Geerinckx-Rice
1f7fe26f83
gnu: python-sockjs-tornado: Edit synopsis & description.
...
* gnu/packages/python-web.scm (python-sockjs-tornado)[synopsis]
[description]: Pick nits.
2018-09-10 18:21:59 +02:00
Pjotr Prins
98d6543f86
gnu: Rename ldc.scm to dlang.scm.
...
* gnu/packages/ldc.scm: Rename to...
* gnu/packages/dlang.scm: ... this.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2018-09-10 17:47:52 +02:00
Pjotr Prins
633e8aab69
gnu: ldc: Update to 1.10.0.
...
* gnu/packages/ldc.scm (ldc): Update to 1.10.0.
[native-inputs]: Switch to LLVM and CLANG.
(ldc-bootstrap)[synopsis, description]: Tweak.
* gnu/packages/patches/ldc-disable-phobos-tests.patch: New file.
* gnu/packages/patches/ldc-1.7.0-disable-phobos-tests.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-10 17:47:52 +02:00
Benjamin Slade
f80d6ea251
gnu: Add hstr.
...
* gnu/packages/shellutils.scm (hstr): New variable.
2018-09-10 17:47:52 +02:00
Alex Kost
8a8662d286
gnu: emacs-guix: Update to 0.5.
...
* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.
[propagated-inputs]: Add 'guile-gcrypt'.
[arguments]: Adjust #:configure-flags accordingly.
2018-09-10 18:38:32 +03:00
Alex Kost
fdf68c232d
gnu: emacs-build-farm: Update to 0.2.1.
...
* gnu/packages/emacs.scm (emacs-build-farm): Update to 0.2.1.
Change source from gitlab to notabug.
2018-09-10 18:38:32 +03:00
Alex Kost
5d78cf0b6c
gnu: emacs-bui: Update to 1.2.0.
...
* gnu/packages/emacs.scm (emacs-bui): Update to 1.2.0.
Change source from github to notabug.
2018-09-10 18:38:32 +03:00
Ricardo Wurmus
5bfa7510d1
gnu: Add python-pygenometracks.
...
* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
1189c7f1b0
gnu: Add python-hicexplorer.
...
* gnu/packages/bioinformatics.scm (python-hicexplorer): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
5bb9e0af8d
gnu: Add python-cooler.
...
* gnu/packages/bioinformatics.scm (python-cooler): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
80f4db91b1
gnu: Add python-pyfaidx.
...
* gnu/packages/bioinformatics.scm (python-pyfaidx): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
1f41f01c14
gnu: Add python-pypairix.
...
* gnu/packages/bioinformatics.scm (python-pypairix): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
a9d496b353
gnu: Add python-intervaltree.
...
* gnu/packages/bioinformatics.scm (python-intervaltree): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
a6a7156aa9
gnu: Add python-dask.
...
* gnu/packages/python.scm (python-dask): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
035989c403
gnu: Add python-partd.
...
* gnu/packages/python.scm (python-partd): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
c27a9d8a88
gnu: Add python-blosc.
...
* gnu/packages/python.scm (python-blosc): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
b2b8226244
gnu: Add python-locket.
...
* gnu/packages/python.scm (python-locket): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
930ba31d20
gnu: Add python-cloudpickle.
...
* gnu/packages/python.scm (python-cloudpickle): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
3d352cb9cf
gnu: Add python-sortedcontainers.
...
* gnu/packages/python.scm (python-sortedcontainers): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
098cb1e9c4
gnu: Add python-cytoolz.
...
* gnu/packages/python.scm (python-cytoolz): New variable.
2018-09-10 16:50:26 +02:00
Ricardo Wurmus
7cd51cd28e
gnu: Add python-toolz.
...
* gnu/packages/python.scm (python-toolz): New variable.
2018-09-10 16:50:25 +02:00
Ricardo Wurmus
943a4cb601
gnu: Add python-multiprocess.
...
* gnu/packages/python.scm (python-multiprocess): New variable.
2018-09-10 16:50:25 +02:00
Ricardo Wurmus
fc62567251
gnu: Add python-dill.
...
* gnu/packages/python.scm (python-dill): New variable.
2018-09-10 16:50:25 +02:00
Tobias Geerinckx-Rice
82d5c7c6de
gnu: python-typing: Update to 3.6.6.
...
* gnu/packages/python.scm (python-typing): Update to 3.6.6.
2018-09-10 15:29:13 +02:00
Tobias Geerinckx-Rice
419aa05e1b
gnu: tinyproxy: Update to 1.10.0.
...
* gnu/packages/web.scm (tinyproxy): Update to 1.10.0.
[native-inputs]: Remove asciidoc.
2018-09-10 15:29:12 +02:00
Tobias Geerinckx-Rice
f6c8a97a04
gnu: spectrwm: Update to 3.2.0.
...
* gnu/packages/wm.scm (spectrwm): Update to 3.2.0.
[arguments]: Remove 'fix-freetype-include' phase.
2018-09-10 15:29:12 +02:00
Marius Bakke
f2d4944086
gnu: guile-xcb: Install compiled files to "lib" instead of "share".
...
This follows up commit b03f270e3d
which removes
the previous install location from Guiles search path.
* gnu/packages/guile-wm.scm (guile-xcb)[arguments]: Amend #:configure-flags.
2018-09-10 14:49:46 +02:00
Mădălin Ionel Patrașcu
57d70dbabc
gnu: Add yad.
...
* gnu/packages/gtk.scm (yad): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-10 14:45:15 +02:00
Marius Bakke
4d19a14e77
gnu: python-llfuse: Update to 1.3.5.
...
* gnu/packages/python.scm (python-llfuse): Update to 1.3.5.
2018-09-10 14:29:40 +02:00
Marius Bakke
073705e725
gnu: python2-contextlib2: Use 'invoke' instead of 'system*'.
...
* gnu/packages/python.scm (python2-contextlib2)[arguments]: Use INVOKE.
2018-09-10 14:28:42 +02:00
Marius Bakke
d06940882d
gnu: python2-contextlib2: Update to 0.5.5.
...
* gnu/packages/python.scm (python2-contextlib2): Update to 0.5.5.
[native-inputs]: Add PYTHON2-UNITTEST2.
2018-09-10 14:25:25 +02:00
Marius Bakke
d4c04e509b
gnu: Remove python-contextlib2.
...
This package is part of the Python standard library since version 3.2.
* gnu/packages/python.scm (python-contextlib2): Rename to ...
(python2-contextlib2): ... this. Remove previous incarnation.
[arguments]: Set #:python.
2018-09-10 14:24:34 +02:00
Marius Bakke
e5eef32445
gnu: perl-module-runtime: Update to 0.016.
...
* gnu/packages/perl.scm (perl-module-runtime): Update to 0.016.
2018-09-10 14:13:36 +02:00
Ludovic Courtès
94b3b6041d
gnu: hpcguix-web: Update to 53e09ea.
...
* gnu/packages/web.scm (hpcguix-web): Update to 53e09ea.
2018-09-10 12:18:14 +02:00
Alex Vong
d930374014
gnu: youtube-dl: Update to 2018.08.04.
...
* gnu/packages/video.scm (youtube-dl): Update to 2018.08.04.
2018-09-10 11:31:34 +02:00
Leo Famulari
de15ff1a6c
gnu: Add asignify.
...
* gnu/packages/crypto.scm (asignify): New variable.
2018-09-09 20:05:47 -04:00
Marius Bakke
02107081da
gnu: double-conversion: Update to 3.1.0.
...
* gnu/packages/maths.scm (double-conversion): Update to 3.1.0.
2018-09-10 01:41:29 +02:00
Marius Bakke
2bdc73fb26
gnu: double-conversion: Don't use unstable tarball.
...
* gnu/packages/maths.scm (double-conversion)[source]: Use GIT-FETCH.
2018-09-10 01:41:29 +02:00
Marius Bakke
68a08dfbe5
gnu: libgd: Incorporate grafted changes.
...
* gnu/packages/gd.scm (gd)[replacement]: Remove field.
[source](patches): Add "gd-CVE-2018-5711.patch" and
"gd-CVE-2018-1000222.patch".
(gd/fixed): Remove variable.
* gnu/packages/php.scm (gd-for-php): Remove variable.
(php)[inputs]: Change GD-FOR-PHP to GD.
2018-09-10 01:39:01 +02:00
Marius Bakke
fe79ce3b1f
Merge branch 'master' into core-updates
2018-09-10 01:37:32 +02:00
Marius Bakke
fb94354a69
gnu: jbig2dec: Remove graft for 0.15.
...
* gnu/packages/image.scm (jbig2dec): Update to 0.15.
[source]: Reindent.
(jbig2dec-0.15): Remove variable.
2018-09-10 01:00:26 +02:00
Marius Bakke
18784d8f11
gnu: OpenSSL: Remove obsolete workaround.
...
* gnu/packages/tls.scm (openssl)[arguments]: Remove workaround that is not
needed for GCC version 5.3 and later.
2018-09-10 00:54:03 +02:00
Leo Famulari
d4bd2453ec
gnu: certbot: Update to 0.27.1.
...
* gnu/packages/tls.scm (python-acme): Update to 0.27.1.
[arguments]: Use invoke.
(certbot): Update to 0.27.1.
[native-inputs]: Use python-sphinx-1.6.
2018-09-09 18:52:04 -04:00
Leo Famulari
ced98c7e89
gnu: libgd: Fix CVE-2018-{5711,1000222}.
...
* gnu/packages/patches/gd-CVE-2018-1000222.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd/fixed): New variable.
* gnu/packages/php.scm (gd-for-php)[source]: Use 'gd-CVE-2018-1000222.patch'.
2018-09-09 18:13:19 -04:00
Ricardo Wurmus
45350539aa
gnu: r-chron: Update to 2.3-53.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-53.
2018-09-09 22:26:02 +02:00
Ricardo Wurmus
ab50580a9d
gnu: r-annotationhub: Update to 2.12.1.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.1.
2018-09-09 22:26:02 +02:00
Ricardo Wurmus
35c076e619
gnu: r-chippeakanno: Update to 3.14.2.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.2.
2018-09-09 22:26:02 +02:00
Roel Janssen
c36d972531
gnu: Update texmaker to 5.0.2.
...
* gnu/packages/tex.scm (texmaker): Update to 5.0.2.
2018-09-09 21:59:08 +02:00
Marius Bakke
4333d48a82
gnu: mariadb: Move unbundle substitutions to source snippet.
...
* gnu/packages/databases.scm (mariadb)[source](snippet): Add two substitutions
from ...
[arguments]: The 'unbundle' phase here. Rename to 'fix-pcre-detection.
2018-09-09 17:59:37 +02:00
Marius Bakke
1d957c79b6
gnu: mariadb: Update to 10.1.36.
...
* gnu/packages/databases.scm (mariadb): Update to 10.1.36.
[arguments]: Disable one new test.
2018-09-09 17:59:36 +02:00
Marius Bakke
5e53722249
gnu: jbig2dec: Don't build libjbig2dec.a.
...
* gnu/packages/image.scm (jbig2dec)[arguments]: New field.
2018-09-09 17:59:36 +02:00
Marius Bakke
de781c05e7
gnu: util-linux: Remove static library reference from '.la' files.
...
* gnu/packages/linux.scm (util-linux)[arguments]: Substitute all '.la' files.
2018-09-09 17:59:36 +02:00
Marius Bakke
334bd08c42
gnu: cmake: Update to 3.12.2.
...
* gnu/packages/cmake.scm (cmake): Update to 3.12.2.
2018-09-09 17:59:36 +02:00
Marius Bakke
a34ce3308e
gnu: gdk-pixbuf: Update to 2.38.0.
...
* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.38.0.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[arguments]: Don't explicitly enable x11 in #:configure-flags. Prevent tests
from getting installed. Adjust test substitutions. Add phase to fix install.
[native-inputs]: Add GETTEXT-MINIMAL.
(gdk-pixbuf+svg)[arguments]: Adjust accordingly.
2018-09-09 17:59:36 +02:00
Marius Bakke
7b1ad8b1d9
gnu: gtk+: Update to 3.24.0.
...
* gnu/packages/gtk.scm (gtk+): Update to 3.24.0.
2018-09-09 17:59:36 +02:00
Marius Bakke
2246c19218
gnu: mesa: Update to 18.1.8.
...
* gnu/packages/gl.scm (mesa): Update to 18.1.8.
2018-09-09 17:59:36 +02:00
Marius Bakke
589aca1c18
gnu: Python: Delete broken test.
...
* gnu/packages/python.scm (python-3.7)[source](snippet): Delete test which
may crash some systems.
2018-09-09 17:59:36 +02:00
Marius Bakke
9adaf1f408
gnu: OpenBLAS: Update to 0.3.3.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.3.
2018-09-09 17:59:35 +02:00
Marius Bakke
9bb8b563a8
gnu: meson: Update to 0.47.2.
...
* gnu/packages/build-tools.scm (meson): Update to 0.47.2.
2018-09-09 17:59:35 +02:00
Marius Bakke
5d948c0c5d
gnu: python-hypothesis: Update to 3.70.3.
...
* gnu/packages/check.scm (python-hypothesis): Update to 3.70.3.
2018-09-09 17:59:35 +02:00
Marius Bakke
ad8ae693c8
gnu: python-pytest: Update to 3.8.0.
...
* gnu/packages/check.scm (python-pytest): Update to 3.8.0.
2018-09-09 17:59:35 +02:00
Marius Bakke
529c36225a
gnu: fontconfig: Update to 2.13.1.
...
* gnu/packages/fontutils.scm (fontconfig): Update to 2.13.1.
2018-09-09 17:59:35 +02:00
Marius Bakke
6cd715adef
gnu: python-scipy: Update to 1.1.0.
...
* gnu/packages/python.scm (python-scipy): Update to 1.1.0.
2018-09-09 17:59:35 +02:00
Marius Bakke
f6f8645cc9
gnu: libcmis: Fix FTBFS with Boost >= 1.68.0.
...
* gnu/packages/libreoffice.scm (libcmis)[arguments]: Add phase to substitute
header file name.
2018-09-09 17:59:35 +02:00
Marius Bakke
436969904c
gnu: vigra: Fix FTBFS with Numpy >= 1.15.
...
* gnu/packages/image.scm (vigra)[arguments]: Disable one more test.
2018-09-09 17:59:34 +02:00
Marius Bakke
6bbbdb1a34
gnu: oath-toolkit: Fix FTBFS with Glibc >= 2.28.
...
* gnu/packages/patches/oath-toolkit-glibc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/authentication.scm (oath-toolkit)[source](patches): New field.
2018-09-09 17:59:34 +02:00
Marius Bakke
0171019418
gnu: openssl: Update to 1.0.2p.
...
* gnu/packages/patches/openssl-1.0.2-CVE-2018-0495.patch,
gnu/packages/patches/openssl-1.0.2-CVE-2018-0732.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/tls.scm (openssl): Update to 1.0.2p.
[source](patches): Remove obsolete.
2018-09-09 17:57:39 +02:00
Marius Bakke
16676fc3b1
gnu: curl: Remove graft for 7.61.1.
...
* gnu/packages/curl.scm (curl): Update to 7.61.1.
(curl-7.61.1): Remove variable.
2018-09-09 17:55:33 +02:00
Marius Bakke
842c44c974
gnu: ghostscript: Remove graft for 9.24.
...
* gnu/packages/patches/ghostscript-CVE-2018-10194.patch,
gnu/packages/patches/ghostscript-runpath.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.24.
(ghostscript/fixed): Remove variable.
2018-09-09 17:54:32 +02:00
Marius Bakke
0aeb134850
Merge branch 'master' into core-updates
2018-09-09 17:40:35 +02:00
Marius Bakke
0084744b3a
gnu: ghostscript: Update replacement to 9.24 [security fixes].
...
The following CVEs are fixed with this release: CVE-2018-15908,
CVE-2018-15909, CVE-2018-15910, CVE-2018-15911, CVE-2018-16509,
CVE-2018-16510, CVE-2018-16511, CVE-2018-16513, CVE-2018-16539,
CVE-2018-16540, CVE-2018-16541, CVE-2018-16542, CVE-2018-16543.
* gnu/packages/patches/ghostscript-CVE-2018-10194.patch: Delete file.
* gnu/packages/patches/ghostscript-CVE-2018-16509.patch,
gnu/packages/patches/ghostscript-bug-699708.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ghostscript.scm (ghostscript/fixed): Update to 9.24.
[source](patches): Remove 'ghostscript-CVE-2018-10194.patch' and
'ghostscript-runpath.patch'. Add 'ghostscript-CVE-2018-16509.patch' and
'ghostscript-bug-699708.patch'.
[arguments]: Add LDFLAGS to #:configure-flags, and a phase to create output
directory.
2018-09-09 16:43:11 +02:00
Marius Bakke
910a20e2b8
gnu: jbig2dec: Replace with 0.15 [security fixes].
...
* gnu/packages/image.scm (jbig2dec-0.15): New public variable.
(jbig2dec)[replacement]: New field.
2018-09-09 16:43:11 +02:00
Marius Bakke
a617fd55df
gnu: OpenBLAS: Update source URI.
...
* gnu/packages/maths.scm (openblas)[source](uri): Use the more stable
SourceForge mirror.
2018-09-09 16:43:11 +02:00
Marius Bakke
1448fa2547
gnu: openal: Update to 1.19.0.
...
* gnu/packages/audio.scm (openal): Update to 1.19.0.
2018-09-09 16:43:11 +02:00
Marius Bakke
e9c1492f66
gnu: glm: Update to 0.9.9.1.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.1.
2018-09-09 16:43:10 +02:00
Marius Bakke
91b3a6d4db
gnu: msmtp: Remove unneeded input.
...
* gnu/packages/mail.scm (msmtp)[inputs]: Remove LIBIDN, which is only required
when using OpenSSL (or GnuTLS sans IDN support).
2018-09-09 16:43:10 +02:00
Marius Bakke
37f9cfae43
gnu: msmtp: Update to 1.8.0.
...
* gnu/packages/mail.scm (msmtp): Update to 1.8.0.
2018-09-09 16:43:10 +02:00
Marius Bakke
249846bfde
gnu: libsoup: Update to 2.64.0.
...
* gnu/packages/gnome.scm (libsoup): Update to 2.64.0.
[inputs]: Add LIBPSL.
2018-09-09 16:43:10 +02:00
Marius Bakke
617cf5de92
gnu: mpfr: Update home page.
...
* gnu/packages/multiprecision.scm (mpfr)[home-page]: Use HTTPS.
2018-09-09 16:43:10 +02:00
Marius Bakke
81bf0fd0d4
gnu: julia: Update objconv input.
...
* gnu/packages/julia.scm (julia)[inputs]: Update the hash of "objconv", which
does not have a stable URL. Add a file name and use HTTPS while at it.
2018-09-09 16:43:10 +02:00
Tobias Geerinckx-Rice
b64e67ad40
gnu: cloc: Update to 1.78.
...
* gnu/packages/code.scm (cloc): Update to 1.78.
[source]: Update URI.
2018-09-09 15:01:55 +02:00
Tobias Geerinckx-Rice
c2311644a5
gnu: signify: Update to 24.
...
* gnu/packages/crypto.scm (signify): Update to 24.
2018-09-09 15:01:54 +02:00
Tobias Geerinckx-Rice
bb105673b8
gnu: musl: Update to 1.1.20.
...
* gnu/packages/musl.scm (musl): Update to 1.1.20.
2018-09-09 15:01:54 +02:00
Tobias Geerinckx-Rice
bb5e06a35e
gnu: perl-pegex: Update to 0.67.
...
* gnu/packages/perl.scm (perl-pegex): Update to 0.67.
2018-09-09 15:01:54 +02:00
Tobias Geerinckx-Rice
9ad80992d0
gnu: perl-config-autoconf: Update to 0.317.
...
* gnu/packages/perl.scm (perl-config-autoconf): Update to 0.317.
2018-09-09 15:01:53 +02:00
Tobias Geerinckx-Rice
15dbc911f6
gnu: perl-extutils-installpaths: Update to 0.012.
...
* gnu/packages/perl.scm (perl-extutils-installpaths): Update to 0.012.
2018-09-09 15:01:53 +02:00
Tobias Geerinckx-Rice
4e77b75e11
gnu: perl-extutils-helpers: Update to 0.026.
...
* gnu/packages/perl.scm (perl-extutils-helpers): Update to 0.026.
2018-09-09 15:01:53 +02:00
Tobias Geerinckx-Rice
748e6e1271
gnu: perl-getopt-long-descriptive: Update to 0.103.
...
* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.103.
2018-09-09 15:01:53 +02:00
Tobias Geerinckx-Rice
04fc0b9489
gnu: perl-namespace-clean: Update to 0.27.
...
* gnu/packages/perl.scm (perl-namespace-clean): Update to 0.27.
2018-09-09 15:01:52 +02:00
Tobias Geerinckx-Rice
49e63e3884
gnu: perl-datetime: Update to 1.50.
...
* gnu/packages/perl.scm (perl-datetime): Update to 1.50.
2018-09-09 15:01:52 +02:00
Tobias Geerinckx-Rice
2d32a6572d
gnu: perl-params-validate: Update to 1.29.
...
* gnu/packages/perl.scm (perl-params-validate): Update to 1.29.
2018-09-09 15:01:52 +02:00
Tobias Geerinckx-Rice
a0fad0374e
gnu: links: Update to 2.17.
...
* gnu/packages/web-browsers.scm (links): Update to 2.17.
2018-09-09 15:01:52 +02:00
Tobias Geerinckx-Rice
b9114ccbad
gnu: aircrack-ng: Update to 1.3.
...
* gnu/packages/networking.scm (aircrack-ng): Update to 1.3.
[native-inputs]: Add autoconf, automake, libtool, and which.
[inputs]: Add libpcap.
[arguments]: Use conventional --options in #:configure-flags.
Restore ‘configure’ phase. Add ‘patch-evalrev’ and customise ‘bootstrap’
phases. Simplify ‘absolutize-tools’ phase.
2018-09-09 14:50:34 +02:00
Tobias Geerinckx-Rice
6930ea33c9
gnu: aircrack-ng: Use HTTPS.
...
* gnu/packages/networking.scm (aircrack-ng)[source, home-page]: Use HTTPS.
2018-09-09 14:50:34 +02:00
宋文武
d7f99b3b76
gnu: perl: Improve description.
...
Fixes <https://bug.gnu.org/32650 >.
* gnu/packages/perl.scm (perl)[description]: Use description from 'perlintro'.
2018-09-09 19:11:52 +08:00
Jan Nieuwenhuizen
c665774a1c
gnu: mes: Update to 0.17.1.
...
* gnu/packages/patches/mes-nyacc-0.86.0.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mes.scm (mes): Update to 0.17.1, depend on latest Nyacc 0.86.0.
(nyacc-for-mes): Remove.
2018-09-08 20:36:30 +02:00
Jan Nieuwenhuizen
445ecce923
gnu: nyacc: Update to 0.86.0.
...
* gnu/packages/patches/nyacc-binary-literals.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mes.scm (nyacc): Update to 0.86.0, add patch.
2018-09-08 20:36:30 +02:00
Benjamin Slade
39b5d8fd9d
gnu: Add frotz, frotz-dumb-terminal, and frotz-sdl.
...
* gnu/packages/games.scm (frotz, frotz-dumb-terminal, frotz-sdl): New
variables.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2018-09-08 13:41:10 -04:00
Mark H Weaver
090e3768e8
gnu: linux-libre: Update to 4.18.6.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.6.
(%linux-libre-hash): Update hash.
2018-09-07 21:05:14 -04:00
Mark H Weaver
4be8fdd3cc
gnu: linux-libre@4.14: Update to 4.14.68.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.68.
(%linux-libre-4.14-hash): Update hash.
2018-09-07 21:03:03 -04:00
Mark H Weaver
ddb419ce04
gnu: linux-libre@4.9: Update to 4.9.125.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.125.
2018-09-07 21:02:30 -04:00
Mark H Weaver
48d17ba1d3
gnu: linux-libre@4.4: Update to 4.4.154.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.154.
2018-09-07 21:01:48 -04:00
Ludovic Courtès
9f1f200c04
gnu: diffoscope: Update to 100.
...
* gnu/packages/package-management.scm (diffoscope): Update to 100.
2018-09-07 17:59:16 +02:00
Ludovic Courtès
afdd1555c4
gnu: indent: Add version 2.2.12.
...
* gnu/packages/code.scm (indent-2.2.12): New variable.
2018-09-07 17:57:04 +02:00
Ludovic Courtès
6b4f99102c
gnu: gdb: Update to 8.2.
...
* gnu/packages/gdb.scm (gdb): Update to 8.2.
2018-09-07 17:55:55 +02:00
Ludovic Courtès
15214828a5
gnu: guile-json: Update to 1.2.0.
...
* gnu/packages/guile.scm (guile-json): Update to 1.2.0.
[license]: Change to GPL3+.
2018-09-07 17:55:51 +02:00
pimi
214452ffd3
gnu: Add r-ggformula.
...
* gnu/packages/cran.scm (r-ggformula): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
pimi
c61f7bc543
gnu: Add r-mosaiccore.
...
* gnu/packages/cran.scm (r-mosaiccore): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
pimi
77b33e0ede
gnu: Add r-ggstance.
...
gnu/packages/cran.scm (r-ggstance): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
pimi
12da2a5e58
gnu: Add r-abctools.
...
* gnu/packages/cran.scm (r-abctools): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
pimi
cadc10a513
gnu: Add r-abcrf.
...
* gnu/packages/cran.scm (r-abcrf): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
pimi
40c10917bc
gnu: Add r-abcp2.
...
* gnu/packages/cran.scm (r-abcp2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
Alex Branham
12498b59e7
gnu: emacs-ess: Update to 17.11.
...
* gnu/packages/emacs.scm (emacs-ess): Update to 17.11
[url]: Use github for https
[snippet]: update julia-mode substitution, only build info doc, bypass failing test
[propagated-inputs]: Add emacs-julia-mode
[description]: Mention that ESS supports Julia and JAGS (which replaces OpenBUGS)
[arguments]: Remove 'set-home' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-07 11:40:06 +02:00
Ludovic Courtès
b03f270e3d
gnu: guile: Remove "share/guile/site" from GUILE_LOAD_COMPILED_PATH.
...
.go files should always go to lib/guile/2.x/site-ccache, and in
practice, we no longer have packages that don't do that.
* gnu/packages/guile.scm (guile-2.2)[native-search-paths]: Remove
"share/guile/site/2.2" from GUILE_LOAD_COMPILED_PATH spec.
(guile-2.0)[native-search-paths]: Likewise.
2018-09-07 10:47:52 +02:00
Tobias Geerinckx-Rice
0012e0dd56
gnu: knot: Update to 2.7.2.
...
* gnu/packages/dns.scm (knot): Update to 2.7.2.
2018-09-07 03:01:40 +02:00
Leo Famulari
91cc2a38de
gnu: Wireshark: Update to 2.6.3 [fixes CVE-2018-{14994,16056,16057,16058}].
...
* gnu/packages/networking.scm (wireshark): Update to 2.6.3.
2018-09-06 17:05:42 -04:00
Leo Famulari
1e066f0706
gnu: curl: Update replacement to 7.61.1 [fixes CVE-2018-14618].
...
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.61.1.
(curl-7.61.0): Replace variable with ...
(curl-7.61.1): ... new variable.
2018-09-06 17:02:52 -04:00
Kei Kebreau
21f5f351fb
gnu: libgme: Update to 0.6.2.
...
* gnu/packages/music.scm (libgme): Update to 0.6.2.
[native-inputs]: Add gcc-4.9.
2018-09-06 11:01:52 -04:00
Eric Brown
f66be84d08
gnu: gfortran, gcc-objc, gcc-objc++: Add version 8.
...
* gnu/packages/gcc.scm (gfortran-8, gcc-objc-8, gcc-objc++-8): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-06 11:12:40 +02:00
Ludovic Courtès
b290a631a0
gnu: guile-present: Install .go files to libdir.
...
* gnu/packages/plotutils.scm (guile-present)[source](modules, snippet):
Remove.
2018-09-06 10:49:42 +02:00
Ludovic Courtès
89874fd156
gnu: guile-charting: Install .go files to libdir.
...
* gnu/packages/plotutils.scm (guile-charting)[source](modules, snippet):
Remove.
2018-09-06 10:48:44 +02:00
Ludovic Courtès
b3ca2d8883
gnu: hpcguix-web: Update to 9ff40fc.
...
* gnu/packages/web.scm (hpcguix-web): Update to 9ff40fc.
[arguments]: In 'wrap-program' phase, add guile-gcrypt, guile-git, and
guile-bytestructures to DEPS.
2018-09-06 10:46:07 +02:00
Ludovic Courtès
96d6c41dfa
gnu: guile-commonmark: Install .go files to libdir.
...
* gnu/packages/guile.scm (guile-commonmark)[source](snippet): Change the
"modir = " and "godir = " line separately, allowing .go files to be
installed to $(libdir).
2018-09-06 10:43:01 +02:00
Ricardo Wurmus
d53aeeafcc
Add missing use-modules clause.
...
This is a follow-up to commit 5dfe491290
.
Sorry!
* gnu/packages/bioinformatics.scm, gnu/packages/graph.scm: Use (gnu packages
bioconductor).
2018-09-06 04:53:32 +02:00
Tobias Geerinckx-Rice
79b283e433
gnu: ccache: Update to 3.4.3.
...
* gnu/packages/ccache.scm (ccache): Update to 3.4.3.
[arguments]: Remove obsolete 'munge-failing-test' phase.
2018-09-06 02:33:47 +02:00
Tobias Geerinckx-Rice
d83477adf9
gnu: font-fira-code: Update to 1.205.
...
* gnu/packages/fonts.scm (font-fira-code): Update to 1.205.
2018-09-06 02:33:47 +02:00
Tobias Geerinckx-Rice
a5c70c2e0e
gnu: libmpdclient: Update to 2.15.
...
* gnu/packages/mpd.scm (libmpdclient): Update to 2.15.
2018-09-06 02:33:47 +02:00
Ricardo Wurmus
00a43cb81c
gnu: pigx-scrnaseq: Use latest version of Pandoc.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
Ricardo Wurmus
c2b4f81e51
gnu: pigx-bsseq: Use latest version of Pandoc.
...
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
Ricardo Wurmus
7cd40c8c5d
gnu: pigx-chipseq: Use latest version of Pandoc.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
Ricardo Wurmus
ca248f1db9
gnu: pigx-rnaseq: Use latest version of Pandoc.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:09 +02:00
Ricardo Wurmus
dff5640a59
gnu: r-rcas: Use standard version of ghc-pandoc-citeproc.
...
* gnu/packages/bioinformatics.scm (r-rcas)[native-inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc".
2018-09-05 20:03:09 +02:00
Ricardo Wurmus
f33a4748b7
gnu: r-modelmetrics: Update to 1.2.0.
...
* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.0.
[propagated-inputs]: Add r-data-table.
2018-09-05 20:03:09 +02:00
Ricardo Wurmus
0d279d607a
gnu: r-robustbase: Update to 0.93-2.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-2.
2018-09-05 20:03:09 +02:00
Ricardo Wurmus
8e499d756a
gnu: r-rann: Update to 2.6.
...
* gnu/packages/statistics.scm (r-rann): Update to 2.6.
2018-09-05 20:03:09 +02:00
Ricardo Wurmus
314e8e763f
gnu: r-ggthemes: Update to 4.0.1.
...
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.0.1.
[propagated-inputs]: Remove r-assertthat and r-colorspace; add r-purrr,
r-stringr, and r-tibble.
2018-09-05 20:03:09 +02:00
Ricardo Wurmus
e5db6890ad
gnu: r-ztable: Update to 0.2.0.
...
* gnu/packages/statistics.scm (r-ztable): Update to 0.2.0.
[propagated-inputs]: Add r-flextable, r-magrittr, r-moonbook, r-officer,
r-rcolorbrewer, r-scales, and r-stringr.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
f0519c8fae
gnu: r-zoo: Update to 1.8-3.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-3.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
8da236a377
gnu: r-gtools: Update to 3.8.1.
...
* gnu/packages/statistics.scm (r-gtools): Update to 3.8.1.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
c28d8d8db0
gnu: r-kernlab: Update to 0.9-27.
...
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-27.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
c0608f815c
gnu: r-adaptivesparsity: Update to 1.6.
...
* gnu/packages/machine-learning.scm (r-adaptivesparsity): Update to 1.6.
[propagated-inputs]: Add r-mass and r-matrix.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
a207bca2ad
gnu: r-codedepends: Move from cran to bioconductor.
...
* gnu/packages/cran.scm (r-codedepends): Move from here...
* gnu/packages/bioconductor.scm (r-codedepends): ...to here.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
5dfe491290
gnu: r-graph: Move from bioinformatics to bioconductor.
...
* gnu/packages/bioinformatics.scm (r-graph): Move from here...
* gnu/packages/bioconductor.scm (r-graph): ...to here.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
caaec88651
gnu: r-ggpubr: Update to 0.1.8.
...
* gnu/packages/cran.scm (r-ggpubr): Update to 0.1.8.
[propagated-inputs]: Add r-glue and r-polynom.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
a9b02ddd73
gnu: r-codedepends: Update to 0.6.5.
...
* gnu/packages/cran.scm (r-codedepends): Update to 0.6.5.
[propagated-inputs]: Add r-graph.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
2e6909baf0
gnu: r-later: Update to 0.7.4.
...
* gnu/packages/cran.scm (r-later): Update to 0.7.4.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
12132229b0
gnu: r-maptools: Update to 0.9-3.
...
* gnu/packages/cran.scm (r-maptools): Update to 0.9-3.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
7a96c4e0a0
gnu: r-fnn: Update to 1.1.2.1.
...
* gnu/packages/cran.scm (r-fnn): Update to 1.1.2.1.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
19950821d7
gnu: r-heatmaply: Update to 0.15.2.
...
* gnu/packages/cran.scm (r-heatmaply): Update to 0.15.2.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
1fe9919a57
gnu: r-tsa: Update to 1.2.
...
* gnu/packages/cran.scm (r-tsa): Update to 1.2.
[propagated-inputs]: Remove r-tseries.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
be5642eb69
gnu: r-statnet-common: Update to 4.1.4.
...
* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.4.
2018-09-05 20:03:08 +02:00
Ricardo Wurmus
e32368c130
gnu: r-metap: Update to 1.0.
...
* gnu/packages/cran.scm (r-metap): Update to 1.0.
[propagated-inputs]: Add r-rdpack.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
d97d98e142
gnu: r-tinytex: Update to 0.8.
...
* gnu/packages/cran.scm (r-tinytex): Update to 0.8.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
6f5b157e3d
gnu: r-pillar: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.3.0.
[propagated-inputs]: Add r-fansi.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
69bf449bf1
gnu: r-xts: Update to 0.11-0.
...
* gnu/packages/cran.scm (r-xts): Update to 0.11-0.
[native-inputs]: Remove.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
1b3b2a72ee
gnu: r-mice: Update to 3.3.0.
...
* gnu/packages/cran.scm (r-mice): Update to 3.3.0.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
a7265593d3
gnu: r-pan: Update to 1.6.
...
* gnu/packages/cran.scm (r-pan): Update to 1.6.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
e7630cc931
gnu: r-jomo: Update to 2.6-4.
...
* gnu/packages/cran.scm (r-jomo): Update to 2.6-4.
[propagated-inputs]: Add r-ordinal.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
b8f6e2f82a
gnu: Add r-ordinal.
...
* gnu/packages/cran.scm (r-ordinal): New variable.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
dc66835226
gnu: Add r-ucminf.
...
* gnu/packages/cran.scm (r-ucminf): New variable.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
45c156bf81
gnu: r-broom: Update to 0.5.0.
...
* gnu/packages/cran.scm (r-broom): Update to 0.5.0.
[propagated-inputs]: Add r-backports, r-dplyr, r-purrr, and r-tibble; remove
r-plyr and r-psych.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
2d2b95d151
gnu: r-ipred: Update to 0.9-7.
...
* gnu/packages/cran.scm (r-ipred): Update to 0.9-7.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
c73752cac5
gnu: r-pls: Update to 2.7-0.
...
* gnu/packages/cran.scm (r-pls): Update to 2.7-0.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
b00e8ae771
gnu: r-glue: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-glue): Update to 1.3.0.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
b72de5b3f6
gnu: r-callr: Update to 3.0.0.
...
* gnu/packages/cran.scm (r-callr): Update to 3.0.0.
[propagated-inputs]: Add r-base64enc.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
e3c1e93e35
gnu: r-reprex: Update to 0.2.0.
...
* gnu/packages/cran.scm (r-reprex): Update to 0.2.0.
[propagated-inputs]: Add r-clipr, r-rlang, and r-withr.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
2cdd9d4f83
gnu: r-reticulate: Update to 1.10.
...
* gnu/packages/cran.scm (r-reticulate): Update to 1.10.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
cb96d81be4
gnu: r-doby: Update to 4.6-2.
...
* gnu/packages/cran.scm (r-doby): Update to 4.6-2.
2018-09-05 20:03:07 +02:00
Ricardo Wurmus
589bd1c426
gnu: Add r-flextable.
...
* gnu/packages/cran.scm (r-flextable): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
78f2c08c0b
gnu: r-rmarkdown: Use latest version of Pandoc.
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* gnu/packages/statistics.scm (r-rmarkdown)[propagated-inputs]: Replace
"ghc-pandoc-1" with "ghc-pandoc".
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
f9f4578ba0
Revert "gnu: ghc-tasty: Update to 1.1.0.3."
...
This reverts commit 3ad6b89090
.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
90708323a1
Revert "gnu: ghc-base-compat: Update to 0.10.4."
...
This reverts commit 0fa2c552fc
.
We may not upgrade base-compat at this point because we haven't upgraded the
default GHC yet.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
0fd7d59dc3
gnu: Add r-moonbook.
...
* gnu/packages/cran.scm (r-moonbook): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
aaed237d1b
gnu: Add r-nortest.
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* gnu/packages/cran.scm (r-nortest): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
1f560b9cdb
gnu: Add r-sjmisc.
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* gnu/packages/cran.scm (r-sjmisc): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
cfc0631433
gnu: Add r-sjlabelled.
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* gnu/packages/cran.scm (r-sjlabelled): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
de059e4bd3
gnu: Add r-prediction.
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* gnu/packages/cran.scm (r-prediction): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
bfee9ce88f
gnu: Add r-snakecase.
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* gnu/packages/cran.scm (r-snakecase): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
c183fa2688
gnu: Add r-officer.
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* gnu/packages/cran.scm (r-officer): New variable.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
5dbe7aa920
gnu: r-googlesheets: Update to 0.3.0.
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* gnu/packages/statistics.scm (r-googlesheets): Update to 0.3.0.
[propagated-inputs]: Add r-tibble.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
88cb7aa9e7
gnu: r-plotly: Update to 4.8.0.
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* gnu/packages/statistics.scm (r-plotly): Update to 4.8.0.
[propagated-inputs]: Add r-promises and r-rlang.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
195eec737c
gnu: r-matrixstats: Update to 0.54.0.
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* gnu/packages/statistics.scm (r-matrixstats): Update to 0.54.0.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
e2a2c3378e
gnu: r-r-rsp: Update to 0.43.0.
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* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.0.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
eefa7c7f3d
gnu: r-r-utils: Update to 2.7.0.
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* gnu/packages/statistics.scm (r-r-utils): Update to 2.7.0.
2018-09-05 20:03:06 +02:00
Ricardo Wurmus
e926159eb3
gnu: r-e1071: Update to 1.7-0.
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* gnu/packages/statistics.scm (r-e1071): Update to 1.7-0.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
2aafa73a94
gnu: r-xml: Update to 3.98-1.16.
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* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.16.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
41f6685388
gnu: r-rcpparmadillo: Update to 0.9.100.5.0.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.100.5.0.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
19cb93be55
gnu: r-git2r: Update to 0.23.0.
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* gnu/packages/statistics.scm (r-git2r): Update to 0.23.0.
[native-inputs]: Add pkg-config.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
2848c52c5e
gnu: r-roxygen2: Update to 6.1.0.
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* gnu/packages/statistics.scm (r-roxygen2): Update to 6.1.0.
[propagated-inputs]: Add r-pkgload and r-purrr.
[native-inputs]: Add r-knitr.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
9b7e8df85b
gnu: r-ade4: Update to 1.7-13.
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* gnu/packages/statistics.scm (r-ade4): Update to 1.7-13.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
7f38b31ecb
gnu: r-xtable: Update to 1.8-3.
...
* gnu/packages/statistics.scm (r-xtable): Update to 1.8-3.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
6b02569f1d
gnu: r-dbplyr: Update to 1.2.2.
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* gnu/packages/statistics.scm (r-dbplyr): Update to 1.2.2.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
3299bc1c5e
gnu: r-yaml: Update to 2.2.0.
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* gnu/packages/statistics.scm (r-yaml): Update to 2.2.0.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
2a96a093ec
gnu: r-evaluate: Update to 0.11.
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* gnu/packages/statistics.scm (r-evaluate): Update to 0.11.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
3bf390279d
gnu: r-scales: Update to 1.0.0.
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* gnu/packages/statistics.scm (r-scales): Update to 1.0.0.
[propagated-inputs]: Remove r-dichromat and r-plyr.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
97c81cc174
gnu: r-stringi: Update to 1.2.4.
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* gnu/packages/statistics.scm (r-stringi): Update to 1.2.4.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
e362be8e89
gnu: Add r-pkgload.
...
* gnu/packages/cran.scm (r-pkgload): New variable.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
4f8247b54b
gnu: Add r-pkgbuild.
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* gnu/packages/cran.scm (r-pkgbuild): New variable.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
1ec1989f80
gnu: r-httpuv: Update to 1.4.5.
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* gnu/packages/web.scm (r-httpuv): Update to 1.4.5.
[native-inputs]: Add pkg-config.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
f077174178
gnu: r-scran: Update to 1.8.4.
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* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.4.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
8e44ff0c0d
gnu: r-scater: Update to 1.8.4.
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* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.4.
2018-09-05 20:03:05 +02:00
Ricardo Wurmus
e69c07e61a
gnu: r-hdf5array: Update to 1.8.1.
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* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
16527f1cbc
gnu: r-ggbio: Update to 1.28.5.
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* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.5.
[propagated-inputs]: Add r-rlang.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
70daf9362b
gnu: r-biovizbase: Update to 1.28.2.
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* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.2.
[propagated-inputs]: Add r-rlang.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
ff7c7d62f4
gnu: r-keggrest: Update to 1.20.1.
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* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
3c55304688
gnu: r-edaseq: Update to 2.14.1.
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* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.14.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
eb251fe524
gnu: r-igraph: Update to 1.2.2.
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* gnu/packages/graph.scm (r-igraph): Update to 1.2.2.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
c273bcdfce
gnu: r-diffusionmap: Update to 1.1-0.1.
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* gnu/packages/graph.scm (r-diffusionmap): Update to 1.1-0.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
6f6aef80e3
gnu: r-seurat: Update to 2.3.4.
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* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.4.
[source]: Remove snippet.
[arguments]: Remove.
[native-inputs]: Remove.
[propagated-inputs]: Remove r-caret, r-diffusionmap, r-fnn, r-gdata, r-ranger,
r-stringr, r-tclust, and rvgam; add r-httr.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
07bd90ce90
gnu: r-msnbase: Update to 2.6.3.
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* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.3.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
4ee8c37cca
gnu: r-maldiquant: Update to 1.18.
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* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.18.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
48b21f8b6b
gnu: r-seqminer: Update to 6.1.
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* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.1.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
ad2ed8d01f
gnu: r-genomicfeatures: Update to 1.32.2.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.2.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
f2e79823c6
gnu: r-rtracklayer: Update to 1.40.6.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.40.6.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
aea1b6fb8a
gnu: r-delayedarray: Update to 0.6.5.
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* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.5.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
3e61c2a8b1
gnu: r-rsamtools: Update to 1.32.3.
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* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.3.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
a02340058c
gnu: r-biocparallel: Update to 1.14.2.
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* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.2.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
1d56c79f86
gnu: r-genomicranges: Update to 1.32.6.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.6.
2018-09-05 20:03:04 +02:00
Ricardo Wurmus
688cb08527
gnu: r-limma: Update to 3.36.3.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.3.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus
33a103a543
gnu: r-variantannotation: Update to 1.26.1.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.26.1.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus
1adf4596a6
gnu: r-edger: Update to 3.22.3.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.3.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus
5728d9c6c0
gnu: r-iranges: Update to 2.14.11.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.11.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus
3c04375614
gnu: r-biocviews: Update to 1.48.3.
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* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.3.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus
ce0e762bf9
gnu: r-annotationforge: Update to 1.22.2.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.22.2.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus
65050163e0
gnu: r-chippeakanno: Update to 3.14.1.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.1.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus
88e4ed55d6
gnu: Add r-clipr.
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* gnu/packages/cran.scm (r-clipr): New variable.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus
6a8469755c
gnu: Add r-rdpack.
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* gnu/packages/cran.scm (r-rdpack): New variable.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus
dd954dd743
gnu: Add r-gbrd.
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* gnu/packages/cran.scm (r-gbrd): New variable.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus
53718658d2
gnu: Add r-polynom.
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* gnu/packages/cran.scm (r-polynom): New variable.
2018-09-05 20:03:03 +02:00
Ricardo Wurmus
356230da4a
gnu: Add r-fansi.
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* gnu/packages/cran.scm (r-fansi): New variable.
2018-09-05 20:03:03 +02:00
Ludovic Courtès
3b0153bd82
gnu: guix-daemon: Add dependency on Guile-Gcrypt.
...
This is a followup to 53166aec98
, which
made Guile-Gcrypt a hard dependency.
* gnu/packages/package-management.scm (guix-daemon)[inputs]: Add
GUILE-GCRYPT.
2018-09-05 15:48:04 +02:00
Ludovic Courtès
7903f00a74
gnu: cuirass: Add dependency on Guile-Gcrypt.
...
This is a followup to 53166aec98
, which
added a hard dependency of Guix on Guile-Gcrypt.
* gnu/packages/ci.scm (cuirass)[inputs]: Add GUILE-GCRYPT.
[arguments]: In 'wrap-program' phase, use 'string-join' to compute
'mods'. Define 'objs' for use in GUILE_LOAD_COMPILED_PATH, and take
objects from lib/guile/X.Y/site-ccache.
2018-09-05 15:35:54 +02:00
Ludovic Courtès
5e3082df1c
gnu: guile-fibers: Install .go files to "…/site-ccache".
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* gnu/packages/guile.scm (guile-fibers)[arguments]: New field.
2018-09-05 15:35:54 +02:00
Eric Bavier
3f5e6ccf9b
slepc: Upgrade to 3.9.2.
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* gnu/packages/maths.scm (slepc): Upgrade to 3.9.2.
2018-09-05 08:10:38 -05:00
Eric Bavier
c15be1280e
petsc: Upgrade to 3.9.3.
...
* gnu/packages/maths.scm (petsc): Upgrade to 3.9.3.
[arguments]: Remove unnecessary configure flags.
2018-09-05 08:10:37 -05:00
Eric Bavier
a3a99e27bb
petsc: Move example code to "examples" output.
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* gnu/packages/maths.scm (petsc)[arguments]: New 'move-examples' phase.
2018-09-05 08:10:37 -05:00
Eric Bavier
b26e4f26ff
gnu: Add SUNDIALS.
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* gnu/packages/maths.scm (sundials, sundials-openmpi): New variables.
2018-09-05 08:10:31 -05:00
Alex Vong
296f091b48
gnu: packages: mp3: Use HTTPS where possible.
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* gnu/packages/mp3.scm (libmad)[home-page]: Use HTTPS.
(libid3tag)[home-page]: Likewise.
(mp3info)[source, home-page]: Likewise.
(mpg123)[source]: Likewise.
(libmpcdec)[source, home-page]: Likewise.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-05 20:56:55 +08:00
Alex Vong
998100e6e8
gnu: eyed3: Update home page.
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* gnu/packages/mp3.scm (eyed3)[home-page]: Update to redirected HTTPS URL.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2018-09-05 20:56:55 +08:00
Ludovic Courtès
53166aec98
gnu: guix: Update to 3d43017
.
...
* gnu/packages/package-management.scm (guix): Update to 3d43017
.
2018-09-05 14:31:48 +02:00
Ludovic Courtès
185948b8a8
gnu: xorg: Fix typo.
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* gnu/packages/xorg.scm: Fix typo in Benjamin's email address.
2018-09-05 13:57:43 +02:00
Ricardo Wurmus
4fd2622df8
gnu: python-tables: Update to 3.4.4.
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* gnu/packages/python.scm (python-tables): Update to 3.4.4.
2018-09-05 12:01:23 +02:00