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2216 Commits

Author SHA1 Message Date
Marius Bakke 1b50df7d5b
gnu: python-markdown: Update home page. 
* gnu/packages/python.scm (python-markdown)[home-page]: Change to current.
 2018-10-22 23:01:19 +02:00
Marius Bakke f232c875d2
gnu: python-lazy-object-proxy: Update to 1.3.1. 
* gnu/packages/python.scm (python-lazy-object-proxy): Update to 1.3.1.
 2018-10-22 23:01:18 +02:00
Marius Bakke b45688313b
gnu: python-mistune: Update to 0.8.4. 
* gnu/packages/python.scm (python-mistune): Update to 0.8.4.
 2018-10-22 23:01:18 +02:00
Luther Thompson 16d212510a
gnu: Add python-ilinkedlist. 
* gnu/packages/python.scm (python-ilinkedlist): New variable.
 2018-10-21 23:54:46 +02:00
Marius Bakke ffddb42d6c
Merge branch 'master' into core-updates 2018-10-21 18:06:02 +02:00
Marius Bakke e381ae317c
gnu: python2-bz2file: Inherit arguments from python-bzfile. 
* gnu/packages/python.scm (python-bz2file)[properties]: Remove field.
(python2-bz2file): Use PACKAGE-WITH-PYTHON2.
 2018-10-21 18:03:06 +02:00
Oleg Pykhalov 227da3a4c5
gnu: python-glances: Update to 3.0.2. 
* gnu/packages/python.scm (python-glances): Update to 3.0.2.
 2018-10-20 18:24:23 +03:00
Efraim Flashner 1febc93f9b
Revert "gnu: python-fonttools: Update to 3.30.0." 
This reverts commit 5fb543b3f7.

python2-fonttools has 2700 dependants, only the python3 version is
failing.
 2018-10-18 21:25:36 +03:00
Efraim Flashner 5fb543b3f7
gnu: python-fonttools: Update to 3.30.0. 
* gnu/packages/python.scm (python-fonttools): Update to 3.30.0.
 2018-10-18 21:14:16 +03:00
Marius Bakke 16f14f63db
gnu: Python: Adjust grafts for core-updates merge. 
This adjust the grafts from a55ebe2e3a and
90aeaee861 to apply to Python 2.7.15 and 3.7.0.

* gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/python.scm (python-2/fixed): Remove patches that are already
present in 2.7.15.
(python-3/fixed): Remove obsolete phase.
 2018-10-17 20:53:24 +02:00
Marius Bakke d02bb02f7d
Merge branch 'master' into core-updates 2018-10-17 20:47:11 +02:00
Marius Bakke a55ebe2e3a
gnu: python2: Add upstream security fixes. 
This addresses CVE-2018-{1060,1061,14647,1000802}.

* gnu/packages/patches/python2-CVE-2018-1000802.patch,
gnu/packages/patches/python2-CVE-2018-1060.patch,
gnu/packages/patches/python2-CVE-2018-1061.patch,
gnu/packages/patches/python2-CVE-2018-14647.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-2/fixed): New variable.
(python-2.7)[replacement]: New field.
(python2-minimal): Use PACKAGE/INHERIT.
 2018-10-17 20:34:37 +02:00
Marius Bakke 90aeaee861
gnu: python: Fix CVE-2018-14647. 
* gnu/packages/patches/python-CVE-2018-14647.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/python.scm (python-3/fixed): New variable.
(python-3.6)[replacement]: New field.
(python-minimal, python-debug, wrap-python3): Use PACKAGE/INHERIT instead of
standard inheritance.
 2018-10-17 20:34:37 +02:00
Efraim Flashner fb3ff265cd
gnu: python-icalendar: Update to 4.0.3. 
* gnu/packages/python.scm (python-icalendar): Update to 4.0.3.
 2018-10-17 11:40:08 +03:00
Maxim Cournoyer 0731fc1ce7
gnu: python-mimeparse: Update to 1.6.0. 
* gnu/packages/python.scm (python-mimeparse): Update to 1.6.0.
[phases]: Enable tests with a custom check phase.
 2018-10-14 22:02:40 -04:00
Leo Famulari d7814696b8
gnu: python-configargparse: Use pypi-uri. 
* gnu/packages/python.scm (python-configargparse,
python2-configargparse)[source]: Use pypi-uri.
 2018-10-12 23:42:43 -04:00
Leo Famulari 3c4d307e86
gnu: python-icalendar: Update to 4.0.2. 
* gnu/packages/python.scm (python-icalendar: Update to 4.0.2.
 2018-10-12 23:42:43 -04:00
Efraim Flashner fd15eb286e
gnu: python-more-itertools: Fix building on 32-bit architectures. 
* gnu/packages/python.scm (python-more-itertools)[arguments]: Add a
custom phase to prevent overflowing on 32-bit architectures.
 2018-10-11 20:55:44 +03:00
Ben Woodcroft 402561ccef
gnu: python2-backports-functools-lru-cache: Update to 1.5. 
* gnu/packages/python.scm (python2-backports-functools-lru-cache): Update to 1.5.
 2018-10-08 16:37:03 +10:00
Marius Bakke cf6db76d2a
Merge branch 'master' into core-updates 2018-10-05 19:15:39 +02:00
Tobias Geerinckx-Rice b733dbc0fb
gnu: python-setproctitle: Use INVOKE. 
* gnu/packages/python.scm (python-setproctitle)[arguments]: Substitute
INVOKE for SYSTEM*.
 2018-09-27 03:51:07 +02:00
Marius Bakke 6a0427af6c
Merge branch 'master' into core-updates 2018-09-26 01:11:32 +02:00
Tobias Geerinckx-Rice 06e6b17bd7
gnu: python-pexpect: Use INVOKE. 
* gnu/packages/python.scm (python-pexpect)[arguments]: Substitute INVOKE
for SYSTEM*.
 2018-09-25 11:46:54 +02:00
Tobias Geerinckx-Rice bbc69023d8
gnu: Add python-semantic-version. 
* gnu/packages/python.scm (python-semantic-version)
(python2-semantic-version): New public variables.
 2018-09-25 11:46:08 +02:00
Tobias Geerinckx-Rice cd8aa06093
gnu: python-networkx: Use HTTPS home page. 
* gnu/packages/python.scm (python-networkx)[home-page]: Use HTTPS.
 2018-09-24 00:34:03 +02:00
Tobias Geerinckx-Rice dd29bd4ebc
gnu: python-networkx: Update to 2.2. 
* gnu/packages/python.scm (python-networkx): Update to 2.2.
 2018-09-24 00:34:02 +02:00
Tobias Geerinckx-Rice 68cbec027e
gnu: python-decorator: Update to 4.3.0. 
* gnu/packages/python.scm (python-decorator): Update to 4.3.0.
[arguments]: Run the test suite.
 2018-09-24 00:34:02 +02:00
Tobias Geerinckx-Rice 3715e79ec8
gnu: python-marshmallow: Update to 3.0.0b14. 
* gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b14.
 2018-09-24 00:34:01 +02:00
Tobias Geerinckx-Rice 199d72e327
gnu: python-pyparsing: Update to 2.2.1. 
* gnu/packages/python.scm (python-pyparsing): Update to 2.2.1.
[source]: Use PYPI-URI.
 2018-09-21 19:52:26 +02:00
Tobias Geerinckx-Rice 41e551b2d3
gnu: python-pyparsing: Update home page. 
* gnu/packages/python.scm (python-pyparsing)[home-page]: Update.
 2018-09-21 15:03:49 +02:00
Tobias Geerinckx-Rice a1d6610e84
gnu: python-rencode: Update to 1.0.5. 
* gnu/packages/python.scm (python-rencode): Update to 1.0.5.
[arguments]: Add a 'delete-bogus-test' phase.
 2018-09-21 13:18:42 +02:00
Tobias Geerinckx-Rice e36058634d
gnu: python-hdf4: Use INVOKE. 
* gnu/packages/python.scm (python-hdf4)[arguments]: Substitute INVOKE
for SYSTEM*.
 2018-09-21 13:18:42 +02:00
Marius Bakke 2817ac3c18
Merge branch 'master' into core-updates 2018-09-20 13:37:58 +02:00
Tobias Geerinckx-Rice 956bcc8ed2
gnu: python-dirsync: Update to 2.2.3. 
* gnu/packages/python.scm (python-dirsync): Update to 2.2.3.
[native-inputs]: Remove unzip.
 2018-09-17 12:50:20 +02:00
Maxim Cournoyer 511f3be695
gnu: Add python-user-agents. 
* gnu/packages/python.scm (python-user-agents, python2-user-agents): New
variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-09-15 12:19:06 +08:00
Maxim Cournoyer 2ee67781ff
gnu: Add python-ua-parser. 
* gnu/packages/python.scm (python-ua-parser, python2-ua-parser): New variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-09-15 12:19:06 +08:00
Maxim Cournoyer 935d5ceb9b
gnu: Add python-pycountry. 
* gnu/packages/python.scm (python-pycountry, python2-pycountry): New variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-09-15 12:19:06 +08:00
Tobias Geerinckx-Rice 3319817174
gnu: pybind11: Update to 2.2.4. 
* gnu/packages/python.scm (pybind11): Update to 2.2.4.
 2018-09-15 05:17:50 +02:00
Tobias Geerinckx-Rice 5c34d97187
gnu: pybind11: Don't use unstable tarball. 
* gnu/packages/python.scm (pybind11)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-09-15 05:17:50 +02:00
Tobias Geerinckx-Rice 25bc6370a4
gnu: snakemake: Update to 5.2.4. 
* gnu/packages/python.scm (snakemake): Update to 5.2.4.
[propagated-inputs]: Add python-gitpython.
 2018-09-15 03:38:31 +02:00
Leo Famulari d763940711
Merge branch 'master' into core-updates 2018-09-13 13:32:39 -04:00
Maxim Cournoyer 8795ce8673
gnu: Add python-black. 
* gnu/packages/python.scm (python-black): New variable.
 2018-09-12 22:16:23 -04:00
Maxim Cournoyer 7e846d07e8
gnu: Add python-toml. 
* gnu/packages/python.scm (python-toml): New variables.
 2018-09-12 22:16:23 -04:00
Maxim Cournoyer 4bd8f4f302
gnu: python-jedi: Update to 0.12.1. 
* gnu/packages/python.scm (python-jedi): Update to 0.12.1.
[propagated-inputs]: Move python-parso here, as it is required at run time.
 2018-09-12 22:16:18 -04:00
Tobias Geerinckx-Rice a855117c59
gnu: snakemake: Update home page. 
* gnu/packages/python.scm (snakemake)[home-page]: Update.
 2018-09-11 21:12:43 +02:00
Tobias Geerinckx-Rice 9b83c15afe
gnu: snakemake: Update to 5.2.2. 
* gnu/packages/python.scm (snakemake): Update to 5.2.2.
 2018-09-11 21:03:08 +02:00
Marius Bakke f659e5e379
gnu: python-waf: Update to 2.0.11. 
* gnu/packages/python.scm (python-waf): Update to 2.0.11.
 2018-09-11 13:43:03 +02:00
Tobias Geerinckx-Rice 4b41568fa5
gnu: python-binaryornot: Update to 0.4.4. 
* gnu/packages/python.scm (python-binaryornot): Update to 0.4.4.
 2018-09-10 22:15:20 +02:00
Tobias Geerinckx-Rice 86788cb0c9
gnu: python-parse: Update to 1.8.4. 
* gnu/packages/python.scm (python-parse): Update to 1.8.4.
 2018-09-10 22:15:20 +02:00
Tobias Geerinckx-Rice c0ea7f5ff4
gnu: python-parse: Mark up description. 
* gnu/packages/python.scm (python-parse)[description]: Use @code{}.
 2018-09-10 22:15:20 +02:00
Tobias Geerinckx-Rice cc12ac58a2
gnu: python-jedi: Update to 0.12.1. 
* gnu/packages/python.scm (python-jedi): Update to 0.12.1.
[synopsis, description]: Adjust to expanded functionality.
 2018-09-10 22:15:19 +02:00
Tobias Geerinckx-Rice 7a6eaf5ca9
gnu: python-parso: Update to 0.3.1. 
* gnu/packages/python.scm (python-parso): Update to 0.3.1.
 2018-09-10 22:15:19 +02:00
Marius Bakke 242f2711bd
gnu: python-pyzmq: Update to 17.1.2. 
* gnu/packages/python.scm (python-pyzmq): Update to 17.1.2.
 2018-09-10 20:38:48 +02:00
Marius Bakke b8d165b18a
gnu: python-traitlets: Update to 4.3.2. 
* gnu/packages/python.scm (python-traitlets): Update to 4.3.2.
[native-inputs]: Remove PYTHON-NOSE and PYTHON-MOCK.  Add PYTHON-PYTEST.
[arguments]: Adjust check phase accordingly.
[properties]: New field.
(python2-traitlets)[propagated-inputs]: Add PYTHON2-ENUM34.
 2018-09-10 20:38:48 +02:00
Marius Bakke 9fc445b1a5
gnu: python-pexpect: Update to 4.6.0. 
* gnu/packages/python.scm (python-pexpect): Update to 4.6.0.
 2018-09-10 20:38:48 +02:00
Marius Bakke fc449407fe
gnu: python-debian: Update home page. 
* gnu/packages/python.scm (python-debian)[home-page]: Set to source
repository.
 2018-09-10 20:27:42 +02:00
Marius Bakke 418ec0adc9
gnu: python-libarchive-c: Update to 2.8. 
* gnu/packages/python.scm (python-libarchive-c): Update to 2.8.
[arguments]: Replace 'check' phase.
[native-inputs]: Add PYTHON-MOCK and PYTHON-PYTEST.
 2018-09-10 20:27:42 +02:00
Marius Bakke ba0052e8ae
gnu: python-tlsh: Update to 3.4.5. 
* gnu/packages/python.scm (python-tlsh): Update to 3.4.5.
 2018-09-10 20:27:42 +02:00
Ricardo Wurmus a6a7156aa9
gnu: Add python-dask. 
* gnu/packages/python.scm (python-dask): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 035989c403
gnu: Add python-partd. 
* gnu/packages/python.scm (python-partd): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus c27a9d8a88
gnu: Add python-blosc. 
* gnu/packages/python.scm (python-blosc): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus b2b8226244
gnu: Add python-locket. 
* gnu/packages/python.scm (python-locket): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 930ba31d20
gnu: Add python-cloudpickle. 
* gnu/packages/python.scm (python-cloudpickle): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 3d352cb9cf
gnu: Add python-sortedcontainers. 
* gnu/packages/python.scm (python-sortedcontainers): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 098cb1e9c4
gnu: Add python-cytoolz. 
* gnu/packages/python.scm (python-cytoolz): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 7cd51cd28e
gnu: Add python-toolz. 
* gnu/packages/python.scm (python-toolz): New variable.
 2018-09-10 16:50:25 +02:00
Ricardo Wurmus 943a4cb601
gnu: Add python-multiprocess. 
* gnu/packages/python.scm (python-multiprocess): New variable.
 2018-09-10 16:50:25 +02:00
Ricardo Wurmus fc62567251
gnu: Add python-dill. 
* gnu/packages/python.scm (python-dill): New variable.
 2018-09-10 16:50:25 +02:00
Tobias Geerinckx-Rice 82d5c7c6de
gnu: python-typing: Update to 3.6.6. 
* gnu/packages/python.scm (python-typing): Update to 3.6.6.
 2018-09-10 15:29:13 +02:00
Marius Bakke 4d19a14e77
gnu: python-llfuse: Update to 1.3.5. 
* gnu/packages/python.scm (python-llfuse): Update to 1.3.5.
 2018-09-10 14:29:40 +02:00
Marius Bakke 073705e725
gnu: python2-contextlib2: Use 'invoke' instead of 'system*'. 
* gnu/packages/python.scm (python2-contextlib2)[arguments]: Use INVOKE.
 2018-09-10 14:28:42 +02:00
Marius Bakke d06940882d
gnu: python2-contextlib2: Update to 0.5.5. 
* gnu/packages/python.scm (python2-contextlib2): Update to 0.5.5.
[native-inputs]: Add PYTHON2-UNITTEST2.
 2018-09-10 14:25:25 +02:00
Marius Bakke d4c04e509b
gnu: Remove python-contextlib2. 
This package is part of the Python standard library since version 3.2.

* gnu/packages/python.scm (python-contextlib2): Rename to ...
(python2-contextlib2): ... this.  Remove previous incarnation.
[arguments]: Set #:python.
 2018-09-10 14:24:34 +02:00
Marius Bakke 589aca1c18
gnu: Python: Delete broken test. 
* gnu/packages/python.scm (python-3.7)[source](snippet): Delete test which
may crash some systems.
 2018-09-09 17:59:36 +02:00
Marius Bakke 6cd715adef
gnu: python-scipy: Update to 1.1.0. 
* gnu/packages/python.scm (python-scipy): Update to 1.1.0.
 2018-09-09 17:59:35 +02:00
Marius Bakke 0aeb134850
Merge branch 'master' into core-updates 2018-09-09 17:40:35 +02:00
Ricardo Wurmus 4fd2622df8
gnu: python-tables: Update to 3.4.4. 
* gnu/packages/python.scm (python-tables): Update to 3.4.4.
 2018-09-05 12:01:23 +02:00
Marius Bakke 70dc8db8e7
Merge branch 'master' into core-updates 2018-09-03 19:20:06 +02:00
Marius Bakke 1f7d142000
gnu: python-matplotlib: Update to 2.2.3. 
* gnu/packages/python.scm (python-matplotlib): Update to 2.2.3.
 2018-09-03 19:09:00 +02:00
Ricardo Wurmus 02ddafef55
gnu: python-scipy: Disable broken tests. 
* gnu/packages/python.scm (python-scipy)[arguments]: Skip two broken tests.
 2018-09-03 13:49:32 +02:00
Marius Bakke 53b7c9716e
gnu: python-waf: Update to 2.0.10. 
* gnu/packages/python.scm (python-waf): Update to 2.0.10.
 2018-09-01 12:59:00 +02:00
Ricardo Wurmus 9ce2f07ab6
gnu: python-matplotlib: Use python-pyqt-without-qtwebkit. 
* gnu/packages/python.scm (python-matplotlib)[propagated-inputs]: Replace
python-pyqt with python-pyqt-without-qtwebkit.
 2018-08-31 16:37:56 +02:00
Ricardo Wurmus 22b770ce00
gnu: Add python-anndata. 
* gnu/packages/python.scm (python-anndata): New variable.
 2018-08-29 17:06:13 +02:00
Ricardo Wurmus d8b8eb3ff5
gnu: Add python-numba. 
* gnu/packages/python.scm (python-numba): New variable.
 2018-08-29 17:06:13 +02:00
Tobias Geerinckx-Rice f882d7c7c5
gnu: python-apipkg: Update home page. 
* gnu/packages/python.scm (python-apipkg)[home-page]: Update.
 2018-08-28 22:31:00 +02:00
Marius Bakke 61fca0fd22
Merge branch 'master' into core-updates 2018-08-28 01:22:24 +02:00
Leo Famulari 6635a3cc7f
gnu: python-pygit2: Update to 0.26.4. 
* gnu/packages/python.scm (python-pygit2, python2-pygit2): Update to 0.26.4.
[source]: Remove 'python-pygit2-disable-network-tests.patch'.
* gnu/packages/patches/python-pygit2-disable-network-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-08-27 15:13:46 -04:00
Marius Bakke 57dac1ee93
gnu: python-cairocffi: Update to 0.9.0. 
* gnu/packages/python.scm (python-cairocffi): Update to 0.9.0.
[source](uri): Use PYPI-URI.
[native-inputs]: Add PYTHON-PYTEST-COV and PYTHON-PYTEST-RUNNER.
[arguments]: Remove #:tests? and outdated comment.
 2018-08-27 20:40:17 +02:00
Marius Bakke a1d3874293
gnu: python-xcffib: Update to 0.6.0. 
* gnu/packages/python.scm (python-xcffib): Update to 0.6.0.
 2018-08-27 20:40:16 +02:00
Marius Bakke b651a5ab35
gnu: python-pandas: Update to 0.23.4. 
* gnu/packages/python.scm (python-pandas): Update to 0.23.4.
[arguments]: Disable "--strict-data-files" pytest option.  Delete one more
test.  Adjust pytest invocation to be more verbose and skip very slow tests.
 2018-08-27 18:28:29 +02:00
Marius Bakke 4053585e3f
gnu: python-beautifulsoup4: Update to 4.6.3. 
* gnu/packages/python.scm (python-beautifulsoup4): Update to 4.6.3.
 2018-08-27 17:13:07 +02:00
Marius Bakke 397334d977
gnu: python-pillow: Update to 5.2.0. 
* gnu/packages/patches/python-pillow-fix-failing-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pillow): Update to 5.2.0.
[source](patches, patch-flags): Remove.
[native-inputs]: Replace PYTHON-NOSE with PYTHON-PYTEST.
[arguments]: Adjust custom check phase accordingly.
 2018-08-27 16:49:05 +02:00
Marius Bakke d7c82e8e03
gnu: python-numpy: Update to 1.15.1. 
* gnu/packages/python.scm (python-numpy): Update to 1.15.1.
[native-inputs]: Replace PYTHON-NOSE with PYTHON-PYTEST.
[arguments]: Set PATH before running tests.  Use INVOKE.
 2018-08-27 16:05:11 +02:00
Marius Bakke 839167ff9d
Merge branch 'staging' into core-updates 2018-08-25 16:44:07 +02:00
Paul Garlick 414f620fbb
gnu: python-pkgconfig: Enable tests. 
* gnu/packages/python.scm (python-pkgconfig)[arguments]: Replace 'check' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-22 15:13:52 -04:00
Paul Garlick 5fab62527c
gnu: python-pkgconfig: Update to 1.3.1. 
* gnu/packages/python.scm (python-pkgconfig): Update to 1.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-08-22 15:13:49 -04:00
Marius Bakke 00ffbfd394
gnu: python-idna: Update to 2.7. 
* gnu/packages/python.scm (python-idna): Update to 2.7.
 2018-08-22 18:01:10 +02:00
Marius Bakke 25febeedc6
gnu: python-numpydoc: Update to 0.8.0. 
* gnu/packages/python.scm (python-numpydoc): Update to 0.8.0.
[source](uri): Use PYPI-URI.
[source](snippet): Remove.
 2018-08-21 17:24:31 +02:00
Marius Bakke 7eab5e7377
gnu: python-greenlet: Update to 0.4.14. 
* gnu/packages/python.scm (python-greenlet): Update to 0.4.14.
 2018-08-21 17:24:31 +02:00
Marius Bakke 3bbfc451ed
gnu: python-sphinx: Update to 1.7.7. 
* gnu/packages/openstack.scm (python-mox3, python-openstackdocstheme,
  python-stevedore, python-oslo.config)[native-inputs]: Change
PYTHON-SPHINX-1.6 to PYTHON-SPHINX.
* gnu/packages/python.scm (python-sphinx): Update to 1.7.7.
[arguments]: Incorporate changes from the 1.6 variant.  Disable two tests.
[propagated-inputs]: Add PYTHON-PACKAGING and PYTHON-SPHINXCONTRIB-WEBSUPPORT.
[native-inputs]: Add IMAGEMAGICK and PYTHON-PYTEST.
(python2-sphinx)[propagated-inputs]: Add PYTHON2-TYPING.
(python-sphinx-1.6, python2-sphinx-1.6, python-sphinx-1.5.3): Remove variables.
(python-matplotlib-documentation)[native-inputs]: Change from
PYTHON-SPHINX-1.6 to PYTHON-SPHINX.
 2018-08-21 17:24:31 +02:00
Marius Bakke f70785a4c0
gnu: python-sphinxcontrib-websupport: Add a python2 variant. 
* gnu/packages/python.scm (python2-sphinxcontrib-websupport): New public variable.
 2018-08-21 17:24:31 +02:00
Marius Bakke f65ef00556
gnu: python-sphinxcontrib-websupport: Update to 1.1.0. 
* gnu/packages/python.scm (python-sphinxcontrib-websupport): Update to 1.1.0.
 2018-08-21 17:24:31 +02:00
Marius Bakke 5f2707a255
gnu: python-sphinxcontrib-websupport: Disable tests. 
* gnu/packages/python.scm (python-sphinxcontrib-websupport)[arguments]: New
field.
[native-inputs, inputs]: Remove.
 2018-08-21 17:24:31 +02:00
Marius Bakke efada0946d
gnu: python-jinja2: Update to 2.10. 
* gnu/packages/python.scm (python-jinja2): Update to 2.10.
 2018-08-21 17:24:30 +02:00
Marius Bakke 88166588a0
gnu: python-babel: Run the tests. 
* gnu/packages/python.scm (python-babel)[native-inputs]: Add PYTHON-FREEZEGUN
and PYTHON-PYTEST.
[arguments]: Replace 'check' phase.  Remove #:tests?.
 2018-08-21 17:24:30 +02:00
Marius Bakke b3a21b2cf9
gnu: python-babel: Update to 2.6.0. 
* gnu/packages/python.scm (python-babel): Update to 2.6.0.
 2018-08-21 17:24:30 +02:00
Marius Bakke 632900f586
gnu: python-packaging: Run the tests. 
* gnu/packages/python.scm (python-packaging)[arguments]: Override 'check' phase.
 2018-08-21 17:24:30 +02:00
Marius Bakke c52ff2ed76
gnu: python-packaging: Update to 17.1. 
* gnu/packages/python.scm (python-packaging): Update to 17.1.
 2018-08-21 17:24:30 +02:00
Marius Bakke 26aef5e956
gnu: python-imagesize: Fix typo. 
* gnu/packages/python.scm (python-imagesize)[synopsis]: Remove stray character.
 2018-08-21 17:24:29 +02:00
Marius Bakke 4c36fc7051
gnu: python-imagesize: Update to 1.0.0. 
* gnu/packages/python.scm (python-imagesize): Update to 1.0.0.
[arguments]: Remove.
 2018-08-21 17:24:29 +02:00
Marius Bakke 9764dac511
gnu: python-markupsafe: Update to 1.0. 
* gnu/packages/python.scm (python-markupsafe): Update to 1.0.
 2018-08-21 17:24:29 +02:00
Marius Bakke 827509a30c
gnu: python-olefile: Update to 0.45.1. 
* gnu/packages/python.scm (python-olefile): Update to 0.45.1.
 2018-08-21 17:24:28 +02:00
Marius Bakke d76cd3defd
gnu: python-lxml: Update to 4.2.4. 
* gnu/packages/python.scm (python-lxml): Update to 4.2.4.
 2018-08-21 17:24:28 +02:00
Marius Bakke f6cd3f7970
gnu: python-ipaddress: Update to 1.0.22. 
* gnu/packages/python.scm (python-ipaddress): Update to 1.0.22.
 2018-08-21 17:24:28 +02:00
Marius Bakke c69d231c2a
gnu: python-pycparser: Update to 2.18. 
* gnu/packages/python.scm (python-pycparser): Update to 2.18.
 2018-08-21 17:24:28 +02:00
Marius Bakke b3751f9cea
gnu: python-setuptools-scm: Update to 3.1.0. 
* gnu/packages/python.scm (python-setuptools-scm): Update to 3.1.0.
 2018-08-21 17:24:28 +02:00
Marius Bakke e241f9a020
gnu: python-more-itertools: Update to 4.3.0. 
* gnu/packages/python.scm (python-more-itertools): Update to 4.3.0.
 2018-08-21 17:24:28 +02:00
Marius Bakke 7f5d3445af
gnu: python-scandir: Update to 1.9.0. 
* gnu/packages/python.scm (python-scandir): Update to 1.9.0.
 2018-08-21 17:24:28 +02:00
Marius Bakke e2da8bcd9e
gnu: python-pytest: Update to 3.7.2. 
* gnu/packages/check.scm (python-pytest): Update to 3.7.2.
(python2-pytest)[propagated-inputs]: Add PYTHON2-PATHLIB.
(python2-pytest-bootstrap)[propagated-inputs]: Add PYTHON-PATHLIB2-BOOTSTRAP.
* gnu/packages/python.scm (python2-pathlib2-bootstrap): New public variable.
 2018-08-21 17:24:28 +02:00
Marius Bakke 27885fcc26
gnu: python-pluggy: Update to 0.7.1. 
* gnu/packages/python.scm (python-pluggy): Update to 0.7.1.
[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
 2018-08-21 17:24:27 +02:00
Tobias Geerinckx-Rice 20b5b97381
gnu: python-rpy2: Update to 2.9.4. 
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4.
[arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM*
now that we can.
 2018-08-21 07:17:06 +02:00
Tobias Geerinckx-Rice db09a450d2
gnu: python-rpy2: Update home page. 
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
 2018-08-21 07:17:05 +02:00
Tobias Geerinckx-Rice 52773e5cf4
gnu: python-py: Use HTTPS home page. 
* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
 2018-08-20 16:36:20 +02:00
Marius Bakke df570bf271
Merge branch 'master' into staging 2018-08-16 20:56:38 +02:00
Marius Bakke 37d203985e
gnu: python-cython: Disable tests that fail on armhf. 
* gnu/packages/python.scm (python-cython)[arguments]: On armhf-linux, add
phase to disable two tests.
 2018-08-16 20:33:28 +02:00
Ricardo Wurmus e9e9783e0a
gnu: Add python-argparse-manpage. 
* gnu/packages/python.scm (python-argparse-manpage): New variable.
 2018-08-16 17:04:10 +02:00
Tobias Geerinckx-Rice a1c86d1db4
gnu: python-txamqp: Update to 0.8.2. 
* gnu/packages/python.scm (python-txamqp): Update to 0.8.2.
 2018-08-15 20:10:22 +02:00
Ricardo Wurmus b86c019efb
Merge branch 'staging' into core-updates 2018-08-13 20:39:32 +02:00
Tobias Geerinckx-Rice 247d4e7271
gnu: python-pep8: Use HTTPS home page. 
Also add a comment about 1.7.1. This doesn't warrant a changelog entry,
so you never read this.

* gnu/packages/python.scm (python-pep8)[home-page]: Use HTTPS.
 2018-08-13 01:51:47 +02:00
Ricardo Wurmus bc731eada6
gnu: python-flake8: Fix build. 
* gnu/packages/python.scm (python-flake8)[arguments]: Add build phases
"delete-broken-test" and "fix-problem-with-pycodestyle".
[propagated-inputs]: Remove python-setuptools.
 2018-08-08 23:10:26 +02:00
Ricardo Wurmus 5417c92877
gnu: python-flake8: Use INVOKE. 
* gnu/packages/python.scm (python-flake8)[arguments]: Use INVOKE and always
return #T.
 2018-08-08 23:10:19 +02:00
Ricardo Wurmus 2df4ecd61d
gnu: python-dbus: Update to 1.2.8. 
* gnu/packages/python.scm (python-dbus): Update to 1.2.8.
[inputs]: Replace "python" with "python-wrapper".
 2018-08-08 22:08:39 +02:00
Ricardo Wurmus cfe62fb22b
gnu: python-cython: Remove failing test. 
* gnu/packages/python.scm (python-cython)[arguments]: Remove failing test.
 2018-08-08 22:08:32 +02:00
Leo Famulari ccdc1690bd
gnu: Cython: Update to 0.28.4. 
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.28.4.
[arguments]: Use invoke.
 2018-08-08 22:08:24 +02:00
Marius Bakke 6af7c2b178
Merge branch 'master' into staging 2018-08-07 00:50:25 +02:00
Ricardo Wurmus 0fb0db0022
gnu: python-scipy: Only run default tests. 
* gnu/packages/python.scm (python-scipy)[arguments]: Only run the default test
suite.  The full test suite is too expensive and brittle.
 2018-08-03 15:24:40 +02:00
Marius Bakke 4214066d45
Merge branch 'master' into core-updates 2018-08-01 15:53:17 +02:00
Marius Bakke 869250809b
Merge branch 'master' into staging 2018-07-30 18:08:28 +02:00
Christopher Baines 6465497fb9
gnu: Remove duplicated python-pafy. 
It was first added in 02f8f804f0, then again in
2dd12924cf.

* gnu/packages/python.scm (python-pafy): Remove duplicated package definition.
 2018-07-29 17:57:53 +01:00
Marius Bakke 20b0aaf986
gnu: python-fonttools: Update license. 
This is a follow-up to commit 4696368108.

* gnu/packages/python.scm (python-fonttools)[license]: Change to EXPAT (since 3.21).
 2018-07-28 23:37:52 +02:00
Efraim Flashner a4b7a1cb4a
gnu: python-3.7: Update deleted tests. 
* gnu/packages/python.scm (python-3.7)[source]: Update the list of files
to be deleted in the snippet.
 2018-07-28 21:56:28 +03:00
Marius Bakke 1af575f04d
Merge branch 'master' into staging 2018-07-28 18:34:59 +02:00
Marius Bakke 4696368108
gnu: python-fonttools: Update to 3.28.0. 
* gnu/packages/python.scm (python-fonttools): Update to 3.28.0.
[arguments]: Remove.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
 2018-07-28 15:52:30 +02:00
Marius Bakke 1166b9c795
gnu: Add python-invoke. 
* gnu/packages/python.scm (python-invoke, python2-invoke): New public variables.
 2018-07-28 15:52:29 +02:00
Marius Bakke 153812ee0d
gnu: python-flake8: Update to 3.5.0. 
* gnu/packages/python.scm (python-flake8): Update to 3.5.0.
 2018-07-28 15:52:28 +02:00
Marius Bakke d0205dfd92
gnu: python-setuptools: Update to 40.0.0. 
* gnu/packages/python.scm (python-setuptools): Update to 40.0.0.
[source](uri): Adjust to zipball archive.
 2018-07-28 15:52:28 +02:00
Marius Bakke fdf5344a23
gnu: python-pycodestyle: Update to 2.4.0. 
* gnu/packages/python.scm (python-pycodestyle): Update to 2.4.0.
 2018-07-28 15:52:28 +02:00
Marius Bakke 9e7d6e818c
gnu: python-more-itertools: Update to 4.2.0. 
* gnu/packages/python.scm (python-more-itertools): Update to 4.2.0.
 2018-07-28 15:52:27 +02:00
Marius Bakke e8e7cd12c7
gnu: python-pyflakes: Update to 2.0.0. 
* gnu/packages/python.scm (python-pyflakes): Update to 2.0.0.
 2018-07-28 15:52:27 +02:00
Marius Bakke 3765c9c95b
gnu: python-py: Update home page. 
* gnu/packages/python.scm (python-py)[home-page]: Change to repository URL.
 2018-07-28 15:52:27 +02:00
Marius Bakke a0d77eba72
gnu: python-py: Update to 1.5.4. 
* gnu/packages/python.scm (python-py): Update to 1.5.4.
 2018-07-28 15:52:27 +02:00
Marius Bakke bc46a45ae7
gnu: python-py: Add missing dependency on setuptools-scm. 
* gnu/packages/python.scm (python-py)[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
 2018-07-28 15:52:26 +02:00
Marius Bakke a422e2478e
gnu: python: Build reproducibly. 
\o/

* gnu/packages/python.scm (python-3.7)[arguments]: Set PYTHONHASHSEED before
rebuilding all bytecode.  Adjust regex so that lib2to3_ex.py gets compiled.
 2018-07-28 15:52:26 +02:00
Marius Bakke 81d967075e
gnu: python: Rebuild bytecode after removing tests. 
* gnu/packages/python.scm (python-3.7)[arguments]: Run 'rebuild-bytecode'
after 'remove-tests' to save CPU cycles.  Adjust exclude regex.
 2018-07-28 15:52:26 +02:00
Marius Bakke a1454169e0
gnu: python: Update to 3.7.0. 
* gnu/packages/python.scm (python-3.6): Rename to ...
(python-3.7): ... this.  Update to 3.7.0.
[arguments]: Remove phase 'patch-timestamp-for-pyc-files' and related code.
Add phases to unset SOURCE_DATE_EPOCH during the check phase.
(python-3): Is now PYTHON-3.7.
* guix/build/python-build-system.scm (enable-bytecode-determinism): Don't set
DETERMINISTIC_BUILD.
 2018-07-28 15:52:26 +02:00
Marius Bakke d66146073d
gnu: python: Remove outdated comment and phases. 
* gnu/packages/python.scm (python-2.7)[arguments]: Don't set SOURCE_DATE_EPOCH
or make libraries writable, since those are handled by gnu-build-system.
(python-3.6): Don't override :#tests?.
 2018-07-28 15:52:25 +02:00
Ricardo Wurmus ed2dfe3955
gnu: Add snakemake-4. 
* gnu/packages/python.scm (snakemake-4): New variable.
* gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq,
pigx-chipseq)[inputs]: Use it.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus 269f100330
gnu: snakemake: Add missing dependencies. 
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie,
python-docutils, python-jinja2, python-jsonschema, and python-networkx.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus 216a72a957
gnu: Add python-datrie. 
* gnu/packages/python.scm (python-datrie): New variable.
 2018-07-27 15:30:38 +02:00
Ricardo Wurmus b62715aa82
gnu: snakemake: Update to 5.2.0. 
* gnu/packages/python.scm (snakemake): Update to 5.2.0.
 2018-07-27 14:19:43 +02:00
Marius Bakke 706ae8e15c
Merge branch 'master' into core-updates 2018-07-24 19:56:35 +02:00
Leo Famulari c69d11c593
gnu: Cython: Update to 0.28.4. 
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.28.4.
[arguments]: Use invoke.
 2018-07-19 18:28:29 -04:00
Danny Milosavljevic a545090ce5
gnu: python-cairocffi: Fix loading of shared libraries. 
Fixes <https://bugs.gnu.org/32170>.

* gnu/packages/patches/python-cairocffi-dlopen-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-cairocffi)[inputs]: Add glib, gtk+, pango.
[native-inputs]: Add python-pytest.
[arguments]: Enable tests.
[arguments]<#:phases>[patch-paths]: New phase.
 2018-07-16 23:51:38 +02:00
Leo Famulari 8e632a6435
gnu: python-pyasn1-modules: Update to 0.2.2. 
* gnu/packages/python.scm (python-pyasn1-modules, python2-pyasn1-modules):
Update to 0.2.2.
 2018-07-16 16:47:55 -04:00
Leo Famulari 90f38fb661
gnu: python-pyasn1: Update to 0.4.3. 
* gnu/packages/python.scm (python-pyasn1, python2-pyasn1): Update to 0.4.3.
 2018-07-16 16:47:52 -04:00
Efraim Flashner 6c10675928
gnu: python-xenon: Update to 0.5.4. 
* gnu/packages/python.scm (python-xenon): Update to 0.5.4.
[arguments]: Remove part of custom 'patch-test-requirements phase.
 2018-07-14 23:19:42 +03:00
Ben Woodcroft 5908818e30
gnu: python-h5py: Update to 2.8.0. 
* gnu/packages/python.scm (python-h5py): Update to 2.8.0.
 2018-07-15 00:43:57 +10:00
Marius Bakke 49b6dc2b4e
Merge branch 'staging' 2018-07-13 00:25:45 +02:00
Marius Bakke 250276a202
gnu: python-pyyaml: Update to 3.13. 
* gnu/packages/python.scm (python-pyyaml): Update to 3.13.
 2018-07-12 17:21:15 +02:00
Marius Bakke 873325b030
Merge branch 'master' into staging 2018-07-08 23:58:22 +02:00
Nicolas Goaziou 2cde6e1de3
gnu: Add python-commandlines. 
* gnu/packages/python.scm (python-commandlines): New variable.
 2018-07-02 17:50:20 +02:00
Marius Bakke 92af3ce417
Merge branch 'master' into staging 2018-07-02 12:18:58 +02:00
Tobias Geerinckx-Rice 4df9c195f2
gnu: python-rst.linker: Update to 1.10. 
* gnu/packages/python.scm (python-rst.linker): Update to 1.10.
 2018-06-30 03:46:18 +02:00
Tobias Geerinckx-Rice e0e7ea7459
gnu: python-xopen: Update to 0.3.3. 
* gnu/packages/python.scm (python-xopen): Update to 0.3.3.
 2018-06-30 03:46:17 +02:00
Tobias Geerinckx-Rice af029a80dd
gnu: python2-xopen: Fix build. 
* gnu/packages/python.scm (python2-xopen)[propagated-inputs]: Add
python2-bz2file.
 2018-06-30 03:46:17 +02:00
Tobias Geerinckx-Rice d5ed14bdda
gnu: python-parso: Update to 0.2.1. 
* gnu/packages/python.scm (python-parso): Update to 0.2.1.
 2018-06-30 03:46:17 +02:00
Ricardo Wurmus f1728d4346
Merge branch 'master' into core-updates 2018-06-29 22:51:23 +02:00
Marius Bakke 9e9bc87eb8
gnu: python-pandas: Update to 0.23.1. 
* gnu/packages/python.scm (python-pandas): Update to 0.23.1.
[arguments]: Drop new S3 test.
[native-inputs]: Add PYTHON-BEAUTIFULSOUP4 and PYTHON-HTML5LIB.
 2018-06-28 22:03:31 +02:00
Marius Bakke 028fc15528
gnu: python-numpy: Update to 1.14.5. 
* gnu/packages/python.scm (python-numpy): Update to 1.14.5.
 2018-06-28 22:03:31 +02:00
Marius Bakke a167873c67
Merge branch 'master' into staging 2018-06-26 13:51:26 +02:00
Tobias Geerinckx-Rice 5666ca5edc
gnu: python-pathpy: Update to 11.0.1. 
* gnu/packages/python.scm (python-pathpy): Update to 11.0.1.
 2018-06-26 04:17:49 +02:00
Oleg Pykhalov 02e2d18297
gnu: Add python-send2trash. 
* gnu/packages/python.scm (python-send2trash, python2-send2trash): New public
variables.
 2018-06-23 19:49:11 +03:00
Marius Bakke 6969c4de44
Merge branch 'master' into staging 2018-06-18 15:29:38 +02:00
Leo Famulari 44d1b9569b
gnu: python-click-log: Update to 0.3.2. 
* gnu/packages/python.scm (python-click-log): Update to 0.3.2.
 2018-06-14 15:51:56 -04:00
Clément Lassieur 85d79a79e4
gnu: Add python-dns-lexicon. 
* gnu/packages/python.scm (python-dns-lexicon, python2-dns-lexicon): New
variables.
 2018-06-14 08:18:06 +02:00
Clément Lassieur b863b50d80
gnu: Add python-pynamecheap. 
* gnu/packages/python.scm (python-pynamecheap, python2-pynamecheap): New
variables.
 2018-06-14 08:18:02 +02:00
Clément Lassieur f4adbe7405
gnu: Add python-tldextract. 
* gnu/packages/python.scm (python-tldextract, python2-tldextract): New
variables.
 2018-06-14 08:17:59 +02:00
Clément Lassieur 0dc572380b
gnu: Add python-requests-file. 
* gnu/packages/python.scm (python-requests-file, python2-requests-file): New
variables.
 2018-06-14 08:17:55 +02:00
Leo Famulari bea07c7f55
gnu: python-llfuse: Update to 1.3.3. 
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.3.3.
 2018-06-12 15:30:30 -04:00
宋文武 feed5194b1
gnu: python-urwid, python2-urwid: Update to 2.0.1. 
* gnu/packages/python.scm (python-urwid, python2-urwird): Update to 2.0.1.
 2018-06-12 20:51:32 +08:00
Marius Bakke a032b4454b
Merge branch 'master' into staging 2018-06-11 23:52:15 +02:00
Ludovic Courtès b63f6c0192
gnu: python2: Deprecate "python@2". 
* gnu/packages/python.scm (python2-called-python): New variable.
 2018-06-11 18:23:24 +02:00
Oleg Pykhalov c0888cefdf
gnu: Add python-fasteners. 
* gnu/packages/python.scm (python-fasteners, python2-fasteners): New
variables.
 2018-06-08 16:25:44 +03:00
Ricardo Wurmus 8709624756
Merge branch 'origin/core-updates-next' into core-updates 2018-06-06 23:01:48 +02:00
Ludovic Courtès a13c1bf4ca
Merge branch 'master' into core-updates 2018-06-01 23:41:40 +02:00
Konrad Hinsen ec8a9892d1
gnu: Add python-bigfloat. 
* gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-05-31 18:13:08 +02:00
Mark H Weaver 1640f16e78
Merge branch 'master' into core-updates 2018-05-27 01:26:09 -04:00
Fis Trivial e8f4d53e03
gnu: Add pybind11. 
* gnu/packages/python.scm (pybind11): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-05-26 22:24:23 +02:00
Mathieu Othacehe 4806d390cb
gnu: Add python2-gdrivefs. 
* gnu/packages/python.scm (python2-gdrivefs): New variable.
 2018-05-25 10:36:43 +02:00
Mathieu Othacehe a037a59f83
gnu: Add python-fusepy. 
* gnu/packages/python.scm (python-fusepy): New variable,
(python2-fusepy): new variable.
 2018-05-25 10:36:43 +02:00