326746e14c
gnu: r-variancepartition: Update to 1.14.1.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1.
[propagated-inputs]: Add r-biocparallel.
2019-10-06 23:08:47 +02:00
eb796f53ef
gnu: r-mixomics: Update to 6.8.5.
...
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5.
2019-10-06 23:08:47 +02:00
1c2e573302
gnu: r-regioner: Update to 1.16.5.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5.
2019-10-06 23:08:47 +02:00
07d0645b6b
gnu: r-backports: Update to 1.1.5.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.5.
2019-10-06 23:08:47 +02:00
f817005bfe
gnu: r-gargle: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-gargle): Update to 0.4.0.
2019-10-06 23:08:47 +02:00
9b112f4030
gnu: r-rcppparallel: Update to 4.4.4.
...
* gnu/packages/cran.scm (r-rcppparallel): Update to 4.4.4.
2019-10-06 23:08:47 +02:00
770321180f
gnu: r-hdf5r: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.0.
2019-10-06 23:08:47 +02:00
2e6ccd6c2d
gnu: r-promises: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-promises): Update to 1.1.0.
2019-10-06 23:08:47 +02:00
ab99236eba
gnu: r-later: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-later): Update to 1.0.0.
2019-10-06 23:08:47 +02:00
b7e7c320a2
gnu: r-maptools: Update to 0.9-8.
...
* gnu/packages/cran.scm (r-maptools): Update to 0.9-8.
2019-10-06 23:08:47 +02:00
ff74344597
gnu: r-htmlwidgets: Update to 1.5.
...
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.
2019-10-06 23:08:47 +02:00
82acc94fbf
gnu: r-htmltools: Update to 0.4.0.
...
* gnu/packages/cran.scm (r-htmltools): Update to 0.4.0.
[arguments]: Remove field.
[propagated-inputs]: Add r-rlang.
2019-10-06 23:08:47 +02:00
33651044c6
gnu: r-seurat: Update to 3.1.1.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.1.
[propagated-inputs]: Add r-httr.
2019-10-06 23:08:47 +02:00
94638cbe77
gnu: r-rsamtools: Update to 2.0.2.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.2.
2019-10-06 23:08:47 +02:00
122c1b3ce7
gnu: r-biomart: Update to 2.40.5.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.5.
2019-10-06 23:08:46 +02:00
d050fdf4c6
gnu: emacs-helm-ag: Fix version.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Fix version.
2019-10-06 22:08:27 +02:00
cb2197508a
gnu: Add emacs-helm-org.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-org): New variable.
2019-10-06 22:08:27 +02:00
45d04b2a7d
gnu: emacs-helm: Update to 3.5.0.
...
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.5.0.
2019-10-06 22:08:27 +02:00
4722330d68
gnu: nss-pam-ldapd: Update to 0.9.11.
...
* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.11.
[inputs]: Replace python-2 with python.
2019-10-06 22:07:07 +02:00
f58702465d
gnu: Add mloop.
...
* gnu/packages/music.scm (mloop): New variable.
2019-10-06 22:01:01 +02:00
4b94e63db6
gnu: guile-studio: Update to 0-2.4d63f3d.
...
* gnu/packages/guile-xyz.scm (guile-studio): Update to 0-2.4d63f3d.
2019-10-06 22:01:01 +02:00
1b6f99ea53
gnu: icedtea-7: Fix build on i686-linux.
...
* gnu/packages/java.scm (icedtea-7)[arguments]: Use "i386" lib directory when
the system is "i686-linux".
2019-10-06 22:01:01 +02:00
fc37b4afb2
gnu: jamvm-1-bootstrap: Fix segfault in bootstrap JVM.
...
* gnu/packages/java.scm (jamvm-1-bootstrap)[arguments]: Add configure flags:
--disable-int-caching, --enable-runtime-reloc-checks, and --enable-ffi.
[inputs]: Add libffi.
2019-10-06 22:01:01 +02:00
ff810d21a5
gnu: emacs-hackernews: Update to 0.5.0-2.2362d7b.
...
* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.5.0-2.2362d7b.
2019-10-06 20:40:23 +02:00
9049f28f57
gnu: emacs-undo-propose-el: Update to 3.0.0-3.f80baee.
...
* gnu/packages/emacs-xyz.scm (emacs-undo-propose-el): Update to 3.0.0-3.f80baee.
2019-10-06 20:18:39 +02:00
1017ba7dd5
gnu: emacs-evil-mc: Update to 0.0.3-2.1cabb86.
...
* gnu/packages/emacs-xyz.scm (emacs-evil-mc): Update to 0.0.3-2.1cabb86.
2019-10-06 19:59:05 +02:00
cec23736d3
gnu: Add cl-goject-introspection.
...
* gnu/packages/lisp.scm (cl-goject-introspection,
sbcl-cl-gobject-introspection): New variables.
2019-10-06 19:34:13 +02:00
63b0ce391f
services: shepherd: Compile service files.
...
This reduces resident memory for PID 1 from 29.8MiB to 28.7MiB right
after boot on a bare-bones system (x86_64-linux).
* gnu/services/shepherd.scm (scm->go): New procedure.
(shepherd-configuration-file)[config]: Call it and use 'load-compiled'
instead of 'primitive-load'.
2019-10-06 14:45:35 +02:00
38b1ea0434
services: udev: Explicitly depend on (gnu build linux-boot).
...
* gnu/services/base.scm (udev-shepherd-service): Wrap 'start' method in
'with-imported-modules'.
2019-10-06 14:45:35 +02:00
62c2217570
services: agetty: Explicitly depend on (gnu build linux-boot).
...
* gnu/services/base.scm (default-serial-port): Wrap in
'with-imported-modules'.
2019-10-06 14:45:35 +02:00
1994422752
system: Add 'mount' and 'umount' to '%setuid-programs'.
...
Fixes <https://bugs.gnu.org/37569 >.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.
* gnu/system.scm (%setuid-programs): Add "mount" and "umount" from
util-linux.
2019-10-06 14:45:35 +02:00
5a65fede0b
gnu: Add cl-random-forest.
...
* gnu/packages/machine-learning.scm (sbcl-cl-random-forest, cl-random-forest,
ecl-cl-random-forest): New variables.
2019-10-06 14:37:54 +02:00
7a15aab836
gnu: Add cl-online-learning.
...
* gnu/packages/machine-learning.scm (sbcl-cl-online-learning,
cl-online-learning, ecl-cl-online-learning): New variables.
2019-10-06 14:28:55 +02:00
6e76087223
gnu: Add cl-libsvm-format.
...
* gnu/packages/machine-learning.scm (sbcl-cl-libsvm-format, cl-libsvm-format,
ecl-cl-libsvm-format): New variables.
2019-10-06 14:28:55 +02:00
2601da0523
gnu: Add cl-store.
...
* gnu/packages/lisp.scm (sbcl-cl-store, cl-store, ecl-cl-store): New
variables.
2019-10-06 14:28:51 +02:00
7273b3b2a6
gnu: sbcl-hu.dwim.asdf: Update to 20190521.
...
* gnu/packages/lisp.scm (sbcl-hu.dwim.asdf): Update to 20190521.
[uri]: Fetch more recent version from Quicklisp.
2019-10-06 14:19:03 +02:00
f65f713846
gnu: sbcl-alexandria: Update to 1.0.0.
...
* gnu/packages/lisp.scm (sbcl-alexandria): Update to 1.0.0.
[native-inputs]: Add rt.
2019-10-06 14:19:03 +02:00
fd0f8860ec
gnu: ecl: Do not compile the deprecated MIT-RT.
...
Compiling the rt bundled with ECL prevents the ecl-rt package from compiling
properly, as ECL thinks it has already been compiled.
* gnu/packages/lisp.scm (ecl)[arguments]: Add '--without-rt' to
'configure-flags'.
2019-10-06 14:19:03 +02:00
d3287fc157
gnu: Add chanl.
...
* gnu/packages/lisp.scm (sbcl-chanl, cl-chanl, ecl-chanl): New variables.
2019-10-06 14:19:03 +02:00
d24d980e8e
gnu: Remove rust-clippy.
...
This was added by accident in 14f3a7e373
2019-10-06 14:38:02 +03:00
aa64198492
gnu: endless-sky: Update to 0.9.10.
...
* gnu/packages/games.scm (endless-sky): Update to 0.9.10.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-10-06 11:58:02 +03:00
e7f6d13722
gnu: zabbix: Update to 4.2.7.
...
* gnu/packages/monitoring.scm: (zabbix) Update to 4.2.7.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-10-06 11:51:16 +03:00
1e8826bdd3
gnu: Update python-pastel to 0.1.1.
...
* gnu/packages/graphics.scm (python-pastel): Update to 0.1.1.
[arguments]: Add custom 'check phase.
[description]: Simplify description.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-10-06 11:46:21 +03:00
6792908d6d
gnu: waybar: Update to 0.8.0.
...
* gnu/packages/wm.scm (waybar): Update to 0.8.0.
2019-10-06 11:05:27 +03:00
5a54baf67c
gnu: r-data-table: Update to 1.12.4.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.12.4.
[inputs]: Add zlib.
2019-10-06 04:46:54 +02:00
011ec062f3
gnu: python-mnemonic: Update to 0.19.
...
* gnu/packages/finance.scm (python-mnemonic): Update to 0.19.
2019-10-06 04:46:54 +02:00
ef10cbb41f
gnu: r-gamlss-dist: Update to 5.1-5.
...
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-5.
2019-10-06 04:46:54 +02:00
ac5e205a3c
gnu: python-traitlets: Update to 4.3.3.
...
* gnu/packages/python-xyz.scm (python-traitlets): Update to 4.3.3.
2019-10-06 04:46:54 +02:00
44805ca503
gnu: r-pegas: Update to 0.12.
...
* gnu/packages/cran.scm (r-pegas): Update to 0.12.
2019-10-06 04:46:53 +02:00
12a66af6b0
gnu: rust-miniz-oxide: Update to 0.3.3.
...
* gnu/packages/crates-io.scm (rust-miniz-oxide): Update to 0.3.3.
2019-10-06 04:46:53 +02:00
Ricardo Wurmus