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Author SHA1 Message Date
Robert Smith 2f87048dbe
gnu: elixir: Update to 1.8.1. 
* gnu/packages/elixir.scm (elixir): Update to 1.8.1.
[source](patches): New field.
[home-page]: Use HTTPS.
* gnu/packages/patches/elixir-path-length.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-03-21 20:48:12 +01:00
Marius Bakke 7ac8d96d77
gnu: gnupg: Update to 2.2.14. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.14.
 2019-03-21 19:23:49 +01:00
Marius Bakke b4d77cfa70
gnu: strace: Update to 5.0. 
* gnu/packages/linux.scm (strace): Update to 5.0.
 2019-03-21 19:23:49 +01:00
Marius Bakke 915618f2ff
gnu: glm: Update to 0.9.9.4. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.4.
 2019-03-21 19:23:48 +01:00
Marius Bakke 941699b343
gnu: tbb: Update to 2019_U5. 
* gnu/packages/tbb.scm (tbb): Update to 2019_U5.
[source]: Use GIT-FETCH because releases are no longer available.
 2019-03-21 19:23:48 +01:00
Marius Bakke 05109e8ef8
gnu: varnish: Update to 6.2.0. 
* gnu/packages/web.scm (varnish): Update to 6.2.0.
[arguments]: Remove obsolete configure flag.  Add substitution for /bin/rm.
 2019-03-21 19:23:48 +01:00
Marius Bakke c11f86ff16
gnu: libgit2: Update to 0.28.1. 
* gnu/packages/patches/libgit2-oom-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/version-control.scm (libgit2): Update to 0.28.1.
[source](patches): Remove 'libgit2-oom-test.patch'.
 2019-03-21 19:23:48 +01:00
Marius Bakke 7c1693df42
gnu: elogind: Update to 241.1. 
* gnu/packages/freedesktop.scm (elogind): Update to 241.1.
 2019-03-21 19:23:48 +01:00
Marius Bakke c1f4e6491c
gnu: curl: Restore derivation. 
Commit af8f7eb4f2 accidentally changed the cURL
derivation.  Remove use of HIDDEN-PACKAGE and restore input order to prevent a
large number of rebuilds.

* gnu/packages/ssh.scm (libssh2-1.8.0): Move from here ...
* gnu/packages/curl.scm (libssh2-1.8.0): ... to here.  Don't use
HIDDEN-PACKAGE and make it non-public.
(curl)[inputs]: Move LIBSSH2-1.8.0 where it was before af8f7eb4f2.
 2019-03-21 19:23:47 +01:00
Leo Famulari af8f7eb4f2
gnu: libssh2: Update to 1.8.1 [security fixes]. 
Fixes CVE-2019-{3855,3856,3857,3858,3859,3860,3861,3862,3863}.

* gnu/packages/ssh.scm (libssh2): Update to 1.8.1.
(libssh2-1.8.0): New variable.
* gnu/packages/curl.scm (curl)[inputs]: Use libssh2-1.8.0.
 2019-03-21 13:37:01 -04:00
Rutger Helling 1661f09a10
gnu: vulkan-tools: Remove unnecessary inputs. 
* gnu/packages/vulkan.scm (vulkan-tools)[inputs]: Remove mesa, vulkan-headers.
[native-inputs]: Add vulkan-headers.
 2019-03-21 11:11:39 +01:00
Rutger Helling ebfe592fd4
gnu: vulkan-loader: Remove unnecessary inputs. 
* gnu/packages/vulkan.scm (vulkan-loader)[arguments]: Remove
-DBUILD_LAYERS=OFF.
[inputs]: Remove all.
[native-inputs]: Add libxrandr, vulkan-headers, wayland.
 2019-03-21 10:56:16 +01:00
Brett Gilio 1e70d72b18
gnu: emacs-hackernews: Update to 0.5.0-1-916c3da. 
* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.5.0-1-916c3da.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-21 09:34:09 +01:00
Tobias Geerinckx-Rice f1aa44ada9
gnu: qwt: Update to 6.1.4. 
* gnu/packages/qt.scm (qwt): Update to 6.1.4.
 2019-03-21 04:07:03 +01:00
Tobias Geerinckx-Rice 5cf3e6fcd5
gnu: jekyll: Update to 3.8.5. 
* gnu/packages/ruby.scm (jekyll): Update to 3.8.5.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice c664ebcc31
gnu: ruby-fivemat: Update to 1.3.7. 
* gnu/packages/ruby.scm (ruby-fivemat): Update to 1.3.7.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice bcf1fe5bbc
gnu: ruby-activesupport: Update to 5.2.2.1. 
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.2.2.1.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice e2fbc27210
gnu: ruby-rails: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-rails): Update to 5.2.2.1.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice 1835fc26b5
gnu: ruby-railties: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-railties): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice 5be0aedf76
gnu: ruby-actionmailer: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actionmailer): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice e16dd18981
gnu: ruby-activestorage: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activestorage): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice fbc2309f6d
gnu: ruby-activejob: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activejob): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice 2a737e80ce
gnu: ruby-actioncable: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actioncable): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice 24c704af8c
gnu: ruby-actionpack: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actionpack): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice e8df5a50c9
gnu: ruby-actionview: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actionview): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice 0fb8ed1734
gnu: ruby-activerecord: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activerecord): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice 22468de494
gnu: ruby-activemodel: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activemodel): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice 04ef07fecb
gnu: libmatroska: Update to 1.5.0. 
* gnu/packages/video.scm (libmatroska): Update to 1.5.0.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice 309f340879
gnu: libmatroska: Don't use NAME in source URI. 
* gnu/packages/video.scm (libmatroska)[source]: Hard-code NAME.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice bd300261af
gnu: python-python-gast: Update to 0.2.2. 
* gnu/packages/python-xyz.scm (python-python-gast): Update to 0.2.2.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice 91b61f0291
gnu: python-latexcodec: Update to 1.0.6. 
* gnu/packages/python-xyz.scm (python-latexcodec): Update to 1.0.6.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice ad1acb8111
gnu: python-pyro4: Update to 4.75. 
* gnu/packages/python-xyz.scm (python-pyro4): Update to 4.75.
 2019-03-21 04:06:58 +01:00
Tobias Geerinckx-Rice e6b244a588
gnu: plantuml: Update to 1.2019.3. 
* gnu/packages/uml.scm (plantuml): Update to 1.2019.3.
 2019-03-21 04:06:58 +01:00
Tobias Geerinckx-Rice 58ab7f2961
gnu: ghostwriter: Update to 1.7.4. 
* gnu/packages/text-editors.scm (ghostwriter): Update to 1.7.4.
 2019-03-21 04:06:58 +01:00
Tobias Geerinckx-Rice 98e7307dd3
gnu: kakoune: Update to 2019.01.20. 
* gnu/packages/text-editors.scm (kakoune): Update to 2019.01.20.
 2019-03-21 04:06:58 +01:00
Tobias Geerinckx-Rice a1cb69280c
gnu: kakoune: Don't use NAME in source URI. 
* gnu/packages/text-editors.scm (kakoune)[source]: Hard-code NAME.
 2019-03-21 04:06:57 +01:00
Tobias Geerinckx-Rice f86d56a7af
gnu: terraform-docs: Update to 0.6.0. 
* gnu/packages/terraform.scm (terraform-docs): Update to 0.6.0.
 2019-03-21 04:06:57 +01:00
Ricardo Wurmus 6cea61ebb5
gnu: r-spam: Update to 2.2-2. 
* gnu/packages/cran.scm (r-spam): Update to 2.2-2.
 2019-03-21 00:02:52 +01:00
Ricardo Wurmus a7524f7000
gnu: r-sjstats: Update to 0.17.4. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.4.
[propagated-inputs]: Remove r-bayesplot, r-coin, r-crayon, r-glmmtmb, r-nlme,
and r-pwr; add r-insight.
 2019-03-21 00:02:52 +01:00
Ricardo Wurmus 9d047572c8
gnu: r-gsl: Update to 2.1-5. 
* gnu/packages/cran.scm (r-gsl): Update to 2.1-5.
 2019-03-21 00:02:52 +01:00
Ricardo Wurmus f69ba00f09
gnu: r-coin: Update to 1.3-0. 
* gnu/packages/cran.scm (r-coin): Update to 1.3-0.
[propagated-inputs]: Add r-libcoin and r-matrixstats.
 2019-03-21 00:02:52 +01:00
Ricardo Wurmus c9ba1155a2
gnu: r-fs: Update to 1.2.7. 
* gnu/packages/cran.scm (r-fs): Update to 1.2.7.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus fef93da89d
gnu: r-ggeffects: Update to 0.9.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.9.0.
[propagated-inputs]: Remove r-crayon, r-ggplot2, r-lme4, r-prediction,
r-sjstats, r-tidyr; add r-insight.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus a3daf011cc
gnu: r-proc: Update to 1.14.0. 
* gnu/packages/cran.scm (r-proc): Update to 1.14.0.
[propagated-inputs]: Remove r-ggplot2.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 20b375ecd8
gnu: r-huge: Update to 1.3.1. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.1.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 8aef1ea6fd
gnu: r-rgl: Update to 0.100.19. 
* gnu/packages/cran.scm (r-rgl): Update to 0.100.19.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 37317189a7
gnu: r-argparse: Update to 2.0.1. 
* gnu/packages/cran.scm (r-argparse): Update to 2.0.1.
[propagated-inputs]: Remove r-getopt.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus fcb8456577
gnu: r-findpython: Update to 1.0.5. 
* gnu/packages/cran.scm (r-findpython): Update to 1.0.5.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 31af2e7f92
gnu: r-sjmisc: Update to 2.7.9. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.9.
[propagated-inputs]: Remove r-broom, r-crayon, r-stringdist, r-stringr, and
r-tidyr.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 1adcbeda5f
gnu: r-ncdf4: Update to 1.16.1. 
* gnu/packages/cran.scm (r-ncdf4): Update to 1.16.1.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 5e16dff99c
gnu: r-sjlabelled: Update to 1.0.17. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.17.
[propagated-inputs]: Remove r-broom, r-prediction, and r-snakecase; add
r-insight.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 83bfddd1b0
gnu: r-gmp: Update to 0.5-13.5. 
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.5.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus ae7e6f0620
gnu: r-mcmc: Update to 0.9-6. 
* gnu/packages/cran.scm (r-mcmc): Update to 0.9-6.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 7e6c5ebbea
gnu: r-gamlss-dist: Update to 5.1-3. 
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-3.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 1a38c31456
gnu: r-future: Update to 1.12.0. 
* gnu/packages/cran.scm (r-future): Update to 1.12.0.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 5ccf16c746
gnu: r-msir: Update to 1.3.2. 
* gnu/packages/cran.scm (r-msir): Update to 1.3.2.
[propagated-inputs]: Remove r-rgl.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus fc82a8f577
gnu: r-e1071: Update to 1.7-1. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 6720b37810
gnu: r-purrr: Update to 0.3.2. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.2.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 08859c8d27
gnu: r-mclust: Update to 5.4.3. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.3.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus c17ee12cf7
gnu: r-robustbase: Update to 0.93-4. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-4.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus e469e10e20
gnu: r-zip: Update to 2.0.1. 
* gnu/packages/cran.scm (r-zip): Update to 2.0.1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 35fe7882a8
gnu: r-tinytex: Update to 0.11. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.11.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 76cbfb5ad5
gnu: r-processx: Update to 3.3.0. 
* gnu/packages/cran.scm (r-processx): Update to 3.3.0.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 78e2973827
gnu: r-cli: Update to 1.1.0. 
* gnu/packages/cran.scm (r-cli): Update to 1.1.0.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 5275f9d7f9
gnu: r-ordinal: Update to 2019.3-9. 
* gnu/packages/cran.scm (r-ordinal): Update to 2019.3-9.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 739135b2be
gnu: r-lmoments: Update to 1.3-1. 
* gnu/packages/cran.scm (r-lmoments): Update to 1.3-1.
[propagated-inputs]: Add r-rcpp and r-rcpparmadillo.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 06070c0397
gnu: r-rcpp: Update to 1.0.1. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus b21eb34776
gnu: r-glue: Update to 1.3.1. 
* gnu/packages/cran.scm (r-glue): Update to 1.3.1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus f9bc918b81
gnu: r-colorspace: Update to 1.4-1. 
* gnu/packages/cran.scm (r-colorspace): Update to 1.4-1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 50d063b511
gnu: r-readxl: Update to 1.3.1. 
* gnu/packages/cran.scm (r-readxl): Update to 1.3.1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 1d7049335f
gnu: r-rmarkdown: Update to 1.12. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.12.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 33fba4cea8
gnu: r-rcpparmadillo: Update to 0.9.200.7.1. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.7.1.
[native-inputs]: Add ghc-pandoc, ghc-pandoc-citeproc, and r-rmarkdown.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 2391e97c4d
gnu: r-httpuv: Update to 1.5.0. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.0.
[native-inputs]: Remove pkg-config; move r-rcpp from here...
[propagated-inputs]: ...to here; add r-r6.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus c2b45ac578
gnu: r-diversitree: Update to 0.9-11. 
* gnu/packages/bioinformatics.scm (r-diversitree): Update to 0.9-11.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 1081e8266f
gnu: r-rstudioapi: Update to 0.10. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.10.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 086ca4deae
gnu: r-git2r: Update to 0.25.2. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.25.2.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 7590441976
gnu: r-tibble: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.1.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 86c8b2f5f5
gnu: r-knitr: Update to 1.22. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.22.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus b6c5b0aca2
gnu: r-highr: Update to 0.8. 
* gnu/packages/statistics.scm (r-highr): Update to 0.8.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 1f2862b1be
gnu: r-lazyeval: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.2.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus a9c8127290
gnu: r-stringi: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.4.3.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 2bf224d0ca
gnu: r-permute: Update to 0.9-5. 
* gnu/packages/statistics.scm (r-permute): Update to 0.9-5.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 35663627fb
gnu: r-matrix: Update to 1.2-16. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-16.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 95bf4508e5
gnu: qtractor: Update to 0.9.6. 
* gnu/packages/music.scm (qtractor): Update to 0.9.6.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 8e91ad0b5c
gnu: r-ape: Update to 5.3. 
* gnu/packages/cran.scm (r-ape): Update to 5.3.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus db39269c89
gnu: r-maldiquant: Update to 1.19.2. 
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.19.2.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 42f344faf7
gnu: Add r-libcoin. 
* gnu/packages/cran.scm (r-libcoin): New variable.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus d1021421d9
gnu: r-callr: Update to 3.2.0. 
* gnu/packages/cran.scm (r-callr): Update to 3.2.0.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus df04509932
gnu: r-dendextend: Update to 1.10.0. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.10.0.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus ffd6e2fd8f
gnu: r-sys: Update to 3.1. 
* gnu/packages/cran.scm (r-sys): Update to 3.1.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus 28d0eb2565
gnu: r-diversitree: Fix typo. 
* gnu/packages/bioinformatics.scm (r-diversitree)[propagated-inputs]: Fix typo
in package labels.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus d14c770d55
gnu: Add r-insight. 
* gnu/packages/cran.scm (r-insight): New variable.
 2019-03-21 00:02:48 +01:00
Mark H Weaver 8b672b2c48
gnu: blender: Restore version 2.79b for systems without OpenGL 3. 
Fixes <https://bugs.gnu.org/33882>.

* gnu/packages/graphics.scm (blender-2.79): New variable.
(blender)[description]: Remove obsolete claim that the stable
release no longer works in Guix.
* gnu/packages/patches/blender-2.79-newer-ffmpeg.patch,
gnu/packages/patches/blender-2.79-python-3.7-fix.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-03-20 18:20:36 -04:00
Ricardo Wurmus 933cc19684
gnu: r-annotationhub: Update to 2.14.5. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.5.
 2019-03-20 22:32:37 +01:00
Ricardo Wurmus e49d5d34ed
gnu: r-genomicfeatures: Update to 1.34.6. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.6.
 2019-03-20 22:32:32 +01:00
Ricardo Wurmus 2b83d218d8
gnu: r-variantannotation: Update to 1.28.13. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.13.
 2019-03-20 22:32:25 +01:00
Ricardo Wurmus 0adb6f207b
gnu: r-category: Update to 2.48.1. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.1.
 2019-03-20 22:32:17 +01:00
Ricardo Wurmus e014dc78f0
gnu: r-dexseq: Update to 1.28.3. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.3.
 2019-03-20 22:32:11 +01:00
Ricardo Wurmus 877fd189c4
gnu: r-annotate: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.60.1.
 2019-03-20 22:31:59 +01:00
Ricardo Wurmus ceab33feee
gnu: guile-wm: Compile and use canonical directories. 
Fixes <https://bugs.gnu.org/34922>.

* gnu/packages/guile-wm.scm (guile-wm)[arguments]: Rename "set-go-directory"
phase to "set-module-directory"; change "set-load-path" phase to wrap
executable in the correct environment variables; add phase "install-go-files".
 2019-03-20 21:04:31 +01:00
Tobias Geerinckx-Rice 6854a5d5f7
gnu: obs: Update to 23.0.2. 
* gnu/packages/video.scm (obs): Update to 23.0.2.
 2019-03-20 20:42:42 +01:00
Tobias Geerinckx-Rice 6b455f8c55
gnu: perl-plack-middleware-methodoverride: Update to 0.20. 
* gnu/packages/web.scm (perl-plack-middleware-methodoverride): Update to 0.20.
 2019-03-20 20:42:41 +01:00
Tobias Geerinckx-Rice 84cd5bd7f8
gnu: perl-uri-template: Update to 0.24. 
* gnu/packages/web.scm (perl-uri-template): Update to 0.24.
 2019-03-20 20:42:41 +01:00
Tobias Geerinckx-Rice 0341fb9b68
gnu: mkfontscale: Update to 1.2.0. 
* gnu/packages/xorg.scm (mkfontscale): Update to 1.2.0.
 2019-03-20 20:42:41 +01:00
Tobias Geerinckx-Rice bcc27a6533
gnu: xf86-video-ati: Update to 19.0.1. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 19.0.1.
 2019-03-20 20:42:40 +01:00
Tobias Geerinckx-Rice cbea33132a
gnu: xf86-video-amdgpu: Update to 19.0.1. 
* gnu/packages/xorg.scm (xf86-video-amdgpu): Update to 19.0.1.
 2019-03-20 20:42:40 +01:00
Tobias Geerinckx-Rice c21242d920
gnu: pencil2d: Update to 0.6.3. 
* gnu/packages/animation.scm (pencil2d): Update to 0.6.3.
 2019-03-20 20:42:40 +01:00
Tobias Geerinckx-Rice dee92e65a2
gnu: python-colorspacious: Don't use unstable tarball. 
* gnu/packages/python-xyz.scm (python-colorspacious)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-20 20:42:39 +01:00
Mark H Weaver c74da2b6c4
gnu: linux-libre: Update to 5.0.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.3.
(%linux-libre-hash): Update hash.
 2019-03-20 15:34:16 -04:00
Mark H Weaver c65cce08b4
gnu: linux-libre@4.19: Update to 4.19.30. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.30.
(%linux-libre-4.19-hash): Update hash.
 2019-03-20 15:34:14 -04:00
Mark H Weaver 7cbbee4a85
gnu: linux-libre@4.14: Update to 4.14.107. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.107.
(%linux-libre-4.14-hash): Update hash.
 2019-03-20 15:34:12 -04:00
Mark H Weaver c62d0e678f
gnu: linux-libre@4.9: Update to 4.9.164. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.164.
 2019-03-20 15:34:09 -04:00
Ricardo Wurmus c16423f143
services: Add nslcd-service-type. 
* gnu/services/authentication.scm (nslcd-service-type, nslcd-configuration,
%nslcd-accounts): New variables.
(uglify-field-name, value->string, serialize-field, serialize-list,
ssl-option?, tls-reqcert-option?, deref-option?,
comma-separated-list-of-strings?, serialize-ignore-users-option, log-option?,
serialize-log-option, valid-map?, scope-option?, serialize-scope-option,
map-entry?, list-of-map-entries?, filter-entry?, list-of-filter-entries?,
serialize-filter-entry, serialize-list-of-filter-entries, serialize-map-entry,
serialize-list-of-map-entries, nslcd-config-file, nslcd-etc-service,
nslcd-shepherd-service, pam-ldap-pam-services, pam-ldap-pam-service,
generate-nslcd-documentation): New procedures.
* gnu/tests/ldap.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (LDAP Services): Document it.
 2019-03-20 20:31:15 +01:00
Rutger Helling bcf66fc2e7
gnu: samba: Update to 4.10.0. 
* gnu/packages/samba.scm (samba): Update to 4.10.0.
[native-inputs]: Replace python-2 with python.
 2019-03-20 20:25:51 +01:00
Rutger Helling 14e6b6a0ae
gnu: xpra: Update to 2.5. 
* gnu/packages/xorg.scm (xpra): Update to 2.5.
 2019-03-20 20:25:51 +01:00
Tobias Geerinckx-Rice 5493320274
gnu: iproute2: Update to 5.0.0. 
* gnu/packages/linux.scm (iproute): Update to 5.0.0.
[inputs, native-inputs]: Order alphabetically.
 2019-03-20 16:21:06 +01:00
Ricardo Wurmus af184b68e7
gnu: 389-ds-base: Use more global directories. 
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Pass
"with-instconfigdir"; add phase "overwrite-default-locations" to overwrite
defaults for "initconfig_dir", the certificate location, and the location of
the defaults file.
 2019-03-20 12:19:56 +01:00
Ricardo Wurmus 19a0a060d2
gnu: 389-ds-base: Fix tool references. 
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Rename phase
"fix-includes" to "fix-references" and fix references to certutil and
c_rehash.
[inputs]: Add nss:bin.
 2019-03-20 12:19:55 +01:00
Ricardo Wurmus 35f9c6628f
gnu: Add adapterremoval. 
* gnu/packages/bioinformatics.scm (adapterremoval): New variable.
 2019-03-20 12:19:55 +01:00
Ricardo Wurmus 7627bad6a7
gnu: 389-ds-base: Set localstatedir to /var. 
* gnu/packages/openldap.scm (389-ds-base)[arguments]: Set localstatedir to
/var.
 2019-03-20 12:19:55 +01:00
Ricardo Wurmus cbc6a28b67
gnu: 389-ds-base: Update to 1.4.0.21. 
* gnu/packages/openldap.scm (389-ds-base): Update to 1.4.0.21.
[arguments]: Add phase "fix-includes".
[inputs]: Add cracklib.
 2019-03-20 12:19:55 +01:00
Pierre Neidhardt 3d7a7b1dd6
gnu: emacs-helm-notmuch: Update to 1.2. 
* gnu/packages/emacs-xyz.scm (emacs-helm-notmuch): Update to 1.2.
 2019-03-20 11:58:37 +01:00
Arun Isaac 7c45593b44
gnu: libinfinity: Update to 0.7.1. 
* gnu/packages/gobby.scm (libinfinity): Update to 0.7.1.
[inputs]: Remove gtk+-2. Add gtk+.
 2019-03-20 15:40:43 +05:30
Mark H Weaver 6d96a4f769
gnu: icecat: Update to 60.6.0-guix1 [security-fixes]. 
Includes fixes for CVE-2018-18506, CVE-2019-9788, CVE-2019-9790,
CVE-2019-9791, CVE-2019-9792, CVE-2019-9793, CVE-2019-9794, CVE-2019-9795,
CVE-2019-9796, and CVE-2019-9801.

* gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.6.0-guix1.
(icecat-source)[upstream-firefox-source]: Update hash.
 2019-03-19 22:36:44 -04:00
Mark H Weaver 8cf160e122
gnu: icecat: Improve computed 'icecat-source' tarball. 
* gnu/packages/gnuzilla.scm (icecat-source): When packing the new IceCat
tarball, set the mtime of archived files to early 1980.  Remove useless
'string-append' applied to one argument.
 2019-03-19 22:36:37 -04:00
Tobias Geerinckx-Rice d17b1c0891
gnu: knot: Update to 2.8.0. 
* gnu/packages/dns.scm (knot): Update to 2.8.0.
[source]: Add patch.
* gnu/packages/patches/knot-include-system-lmdb-header.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-03-20 00:44:57 +01:00
nee 1c4d4196c2
gnu: cataclysm-dda: Update to 0.D. 
* gnu/packages/games.scm (cataclysm-dda): Update to 0.D.
 2019-03-19 16:18:56 -04:00
Tobias Geerinckx-Rice c1d6865166
gnu: gandi.cli: Update to 1.4. 
* gnu/packages/networking.scm (gandi.cli): Update to 1.4.
 2019-03-19 18:21:17 +01:00
Tobias Geerinckx-Rice 47982ca9b0
gnu: python-ipy: Update to 1.00. 
* gnu/packages/networking.scm (python-ipy): Update to 1.00.
 2019-03-19 18:21:16 +01:00
Tobias Geerinckx-Rice 598c2bbc53
gnu: google-brotli: Update to 1.0.7. 
* gnu/packages/compression.scm (google-brotli): Update to 1.0.7.
 2019-03-19 16:57:48 +01:00
Tobias Geerinckx-Rice fc82c1752e
gnu: google-brotli: Don't use unstable tarball. 
* gnu/packages/compression.scm (google-brotli)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-19 16:57:47 +01:00
Tobias Geerinckx-Rice 7f5a010b9a
gnu: perl-catalyst-plugin-session: Update to 0.41. 
* gnu/packages/web.scm (perl-catalyst-plugin-session): Update to 0.41.
 2019-03-19 16:57:47 +01:00
Tobias Geerinckx-Rice 2f67ac377a
gnu: perl-catalyst-action-rest: Update to 1.21. 
* gnu/packages/web.scm (perl-catalyst-action-rest): Update to 1.21.
 2019-03-19 16:57:47 +01:00
Tobias Geerinckx-Rice 96473656ad
gnu: perl-apache-logformat-compiler: Update to 0.35. 
* gnu/packages/web.scm (perl-apache-logformat-compiler): Update to 0.35.
[native-inputs]: Replace perl-module-build with
perl-module-build-tiny.
 2019-03-19 16:57:47 +01:00
Tobias Geerinckx-Rice c10c9b6765
gnu: geomyidae: Update to 0.34. 
* gnu/packages/web.scm (geomyidae): Update to 0.34.
 2019-03-19 16:57:46 +01:00
Tobias Geerinckx-Rice e0d6d1d56c
gnu: geomyidae: Update home page. 
* gnu/packages/web.scm (geomyidae)[home-page]: Point to relevant Web content.
 2019-03-19 16:57:45 +01:00
Tobias Geerinckx-Rice 429947ef62
gnu: geomyidae: Don't use unstable tarball. 
* gnu/packages/web.scm (geomyidae)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-19 16:57:45 +01:00
Tobias Geerinckx-Rice ab3423d2ff
gnu: youtube-dl: Update to 2019.03.18. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.03.18.
 2019-03-19 16:57:45 +01:00
Tobias Geerinckx-Rice 8486a80d6a
gnu: dcmtk: Support more. 
* gnu/packages/image-processing.scm (dcmtk)[inputs]: Add libxml2, and openssl.
 2019-03-19 16:57:45 +01:00
Tobias Geerinckx-Rice 882d579d3f
gnu: dcmtk: Update to 3.6.4. 
* gnu/packages/image-processing.scm (dcmtk): Update to 3.6.4.
[inputs]: Add libjpeg.  Order alphabetically.  Move doxygen…
[native-inputs]: …here.  Remove perl.  Order alphabetically.
 2019-03-19 16:57:44 +01:00
Tobias Geerinckx-Rice d2ad4f2e00
gnu: dcmtk: Use HTTPS home page. 
* gnu/packages/image-processing.scm (dcmtk)[home-page]: Use HTTPS.
 2019-03-19 16:57:44 +01:00
Pierre Neidhardt c0aaca02c7
gnu: Add emacs-helm-wikipedia. 
* gnu/packages/emacs-xyz.scm (emacs-helm-wikipedia): New variable.
 2019-03-19 15:55:08 +01:00
Efraim Flashner 7d1494d979
gnu: mesa: Fix building on non-Intel architectures. 
* gnu/packages/gl.scm (mesa)[arguments]: Add explicit vulkan-driver
support in match statement.
 2019-03-19 16:54:33 +02:00
Efraim Flashner fe7c6f91dd
gnu: libdrm: Extend test timeout on armhf-linux. 
* gnu/packages/xdisorg.scm (libdrm)[arguments]: Replace the 'check phase
on armhf-linux.
 2019-03-19 16:54:33 +02:00
Efraim Flashner c022edf6f4
gnu: libdrm: Fix configure-flags. 
* gnu/packages/xdisorg.scm (libdrm)[arguments]: Update configure-flags
for new build system. Join aarch64 and armhf selections.
 2019-03-19 16:54:30 +02:00
Pierre Neidhardt 2390e0d4d6
gnu: emacs-evil-collection: Update to 20190319. 
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20190319.
 2019-03-19 14:55:06 +01:00
Rutger Helling f20c64ed0b
gnu: scanmem: Enable GUI frontend. 
* gnu/packages/debug.scm (scanmem): Enable GUI frontend.
[arguments]: Add "--enable-gui" configure flag and 'hardcode-python,
'wrap-gameconqueror phases.
[native-inputs]: Add python-wrapper, gobject-introspection, gtk+.
[propogated-inputs]: Add python-pygobject.
 2019-03-19 13:59:40 +01:00
Ricardo Wurmus c5542196d5
gnu: nanopolish: Use python-wrapper. 
* gnu/packages/bioinformatics.scm (nanopolish)[inputs]: Replace "python" with
"python-wrapper" as scripts require "python" executable.
 2019-03-19 13:30:41 +01:00
Ricardo Wurmus 7c1685e9d8
gnu: nanopolish: Remove bundled library sources. 
* gnu/packages/bioinformatics.scm (nanopolish)[source]: Add snippet to remove
bundled htslib sources.
 2019-03-19 13:30:41 +01:00
Tobias Geerinckx-Rice cf31179062
gnu: hyperledger-fabric: Use git tag. 
* gnu/packages/hyperledger.scm (hyperledger-fabric)[source]: Check out
the (supposedly immutable) tag instead of the (maintenance) branch.
 2019-03-19 12:22:18 +01:00
Clément Lassieur 3e0df6cd4a
gnu: Add emacs-org-re-reveal. 
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): New variable.
 2019-03-19 11:32:30 +01:00
Clément Lassieur dfb49d7820
gnu: emacs-org-reveal: Update to 1cdd088. 
* gnu/packages/emacs-xyz.scm (emacs-org-reveal): Update to 1cdd088.
 2019-03-19 11:32:30 +01:00
Clément Lassieur 6e4a5b9e37
gnu: emacs-org-reveal: Use git-version and git-file-name. 
* gnu/packages/emacs-xyz.scm (emacs-org-reveal)[version]: Use git-version.
[source]: Use git-file-name.
 2019-03-19 11:32:30 +01:00
nee 4790365308
gnu: Add edgar. 
* gnu/packages/games.scm (edgar): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-19 11:30:34 +01:00
Dan Frumin 718d358a72
gnu: coq-flocq: remove unnecessary return values 
* gnu/packages/coq.scm (coq-flocq)[arguments]: Add unnecessary return
values after 'invoke' calls.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-19 11:30:34 +01:00
Rutger Helling f6dadee426
gnu: mesa: Update to 18.3.5. 
* gnu/packages/gl.scm (mesa): Update to 18.3.5.
[build-system]: Switch to meson-build-system.
[native-inputs]: Add "bison", "flex" and "gettext-minimal".
[arguments]: Adjust arguments to Meson.
* gnu/packages/sdl.scm (sdl)[propogated-inputs]: Add mesa.
[inputs]: Remove mesa.
 2019-03-19 10:49:45 +01:00
Rutger Helling 34b81a9cdd
gnu: libdrm: Switch to meson-build-system. 
* gnu/packages/xdisorg.scm (libdrm)[build-system]: Switch to
meson-build-system.
[arguments]: Adjust arguments to Meson.
 2019-03-19 10:49:45 +01:00
Andreas Enge 1d6589db81
gnu: Add python-flint. 
* gnu/packages/algebra.scm (python-flint): New variable.
* gnu/packages/patches/python-flint-includes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
 2019-03-19 10:45:17 +01:00
Efraim Flashner 835dada6e4
gnu: Add rtv. 
* gnu/packages/syndication.scm (rtv): New variable.
 2019-03-19 08:48:33 +02:00
Efraim Flashner 9569db373c
gnu: Add python-vcrpy. 
* gnu/packages/python-check.scm (python-vcrpy): New variable.
 2019-03-19 08:48:29 +02:00
Leo Famulari 5cfe7ad870
gnu: MPD: Update to 0.21.6. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.6.
 2019-03-18 20:29:25 -04:00
Tobias Geerinckx-Rice 8f350d83a4
gnu: autorandr: Fix typo in synopsis. 
* gnu/packages/xdisorg.scm (autorandr)[synopsis]: Fix typo.
 2019-03-18 23:52:42 +01:00
Ricardo Wurmus 9e1d9a0a46
gnu: python-biom-format: Fix build. 
* gnu/packages/bioinformatics.scm (python-biom-format)[source]: Remove
generated C files.
[arguments]: Disable second broken test.
 2019-03-18 23:46:27 +01:00
Ricardo Wurmus 0fa926c2e5
gnu: python-pyarrow: Update to 0.10.0. 
* gnu/packages/databases.scm (python-pyarrow): Update to 0.10.0.
[arguments]: Delete "build" phase.
[native-inputs]: Add python-pytest-runner.
 2019-03-18 23:46:27 +01:00
Ricardo Wurmus e58d3a5926
gnu: apache-arrow: Update to 0.10.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 0.10.0.
[inputs]: Replace jemalloc-4.5.0 with jemalloc.
 2019-03-18 23:46:27 +01:00
Tobias Geerinckx-Rice cdfea208b8
gnu: dav1d: Update to 0.2.1. 
* gnu/packages/video.scm (dav1d): Update to 0.2.1.
 2019-03-18 23:42:49 +01:00
Tobias Geerinckx-Rice 362f5306e4
gnu: st: Update to 0.8.2. 
* gnu/packages/suckless.scm (st): Update to 0.8.2.
[arguments]: Re-indent.
 2019-03-18 23:42:48 +01:00
Tobias Geerinckx-Rice 4b886fb00c
gnu: darktable: Update to 2.6.1. 
* gnu/packages/photo.scm (darktable): Update to 2.6.1.
 2019-03-18 23:42:48 +01:00
Tobias Geerinckx-Rice 9081333bcd
gnu: cracklib: Update to 2.9.7. 
* gnu/packages/password-utils.scm (cracklib): Update to 2.9.7.
[source]: Remove patches.
* gnu/packages/patches/cracklib-CVE-2016-6318.patch,
gnu/packages/patches/cracklib-fix-buffer-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2019-03-18 23:42:48 +01:00
Tobias Geerinckx-Rice ef501bb105
gnu: speedtest-cli: Update to 2.1.1. 
* gnu/packages/networking.scm (speedtest-cli): Update to 2.1.1.
 2019-03-18 23:42:47 +01:00
Tobias Geerinckx-Rice 0a8c2c98fb
gnu: ntp: Update to 4.2.8p13. 
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p13.
 2019-03-18 23:42:47 +01:00
Tobias Geerinckx-Rice d7caf8b8cd
gnu: setbfree: Update to 0.8.8. 
* gnu/packages/music.scm (setbfree): Update to 0.8.8.
 2019-03-18 23:42:47 +01:00
Nicolas Goaziou 5dfbf5620c
gnu: Add emacs-xr. 
* gnu/packages/emacs-xyz.scm (emacs-xr): New variable.
 2019-03-18 23:35:32 +01:00
Andreas Enge 402db5113f
gnu: arb: Update to 2.16.0. 
* gnu/packages/algebra.scm (arb): Update to 2.16.0.
 2019-03-18 23:22:33 +01:00
Tobias Geerinckx-Rice 01d7cafeef
gnu: bwm-ng: Update to 0.6.2. 
* gnu/packages/networking.scm (bwm-ng): Update to 0.6.2.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
[arguments]: Add ‘disable-premature-./configure’ phase.
[native-inputs]: Add autoconf and automake.
 2019-03-18 22:17:37 +01:00
Tobias Geerinckx-Rice 223ef546df
gnu: proxychains-ng: Update to 4.14. 
* gnu/packages/networking.scm (proxychains-ng): Update to 4.14.
 2019-03-18 22:17:37 +01:00
Tobias Geerinckx-Rice 110387f894
gnu: proxychains-ng: Don't use NAME in source URI. 
* gnu/packages/networking.scm (proxychains-ng)[source]: Hard-code NAME.
 2019-03-18 22:17:37 +01:00
Tobias Geerinckx-Rice b2c52fc9ff
gnu: petsc: Update to 3.10.4. 
* gnu/packages/maths.scm (petsc): Update to 3.10.4.
 2019-03-18 22:17:37 +01:00
Tobias Geerinckx-Rice 886e97725d
gnu: bitlbee-discord: Update to 0.4.2. 
* gnu/packages/messaging.scm (bitlbee-discord): Update to 0.4.2.
 2019-03-18 22:17:36 +01:00
Tobias Geerinckx-Rice d1ef0e024f
gnu: bitlbee-discord: Don't use unstable tarball. 
* gnu/packages/messaging.scm (bitlbee-discord)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-03-18 22:17:36 +01:00
Tobias Geerinckx-Rice 0e36b2b7d0
gnu: gnuplot: Update to 5.2.6. 
* gnu/packages/maths.scm (gnuplot): Update to 5.2.6.
 2019-03-18 22:17:36 +01:00
Ricardo Wurmus 6e42cef0ab
gnu: Add bbmap. 
* gnu/packages/bioinformatics.scm (bbmap): New variable.
 2019-03-18 21:35:57 +01:00
Ricardo Wurmus 43ec3b68e5
gnu: padthv1: Update to 0.9.6. 
* gnu/packages/music.scm (padthv1): Update to 0.9.6.
 2019-03-18 21:35:57 +01:00
Ricardo Wurmus 1540d80d9f
gnu: samplv1: Update to 0.9.6. 
* gnu/packages/music.scm (samplv1): Update to 0.9.6.
 2019-03-18 21:35:56 +01:00
Ricardo Wurmus c0541ba822
gnu: drumkv1: Update to 0.9.6. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.6.
 2019-03-18 21:35:56 +01:00
Ricardo Wurmus 1b80ed7d5b
gnu: synthv1: Update to 0.9.6. 
* gnu/packages/music.scm (synthv1): Update to 0.9.6.
 2019-03-18 21:35:56 +01:00
Tobias Geerinckx-Rice 31f6c6123b
gnu: ngircd: Update to 25. 
* gnu/packages/messaging.scm (ngircd): Update to 25.
 2019-03-18 21:20:32 +01:00
Tobias Geerinckx-Rice 98a5cd51b3
gnu: ipopt: Update to 3.12.12. 
* gnu/packages/maths.scm (ipopt): Update to 3.12.12.
 2019-03-18 21:20:31 +01:00
Tobias Geerinckx-Rice b520a00d32
gnu: lua-sec: Update to 0.7. 
* gnu/packages/lua.scm (lua-sec, lua5.1-sec, lua5.2-sec): Update to 0.7.
 2019-03-18 21:20:31 +01:00
Leo Famulari bf197dcda0
gnu: Go 1.11: Update to 1.11.6. 
* gnu/packages/golang.scm (go-1.11): Update to 1.11.6.
[arguments]: Remove the 'tarbomb-workaround' phase and inherit the 'chdir'
phase.
 2019-03-18 16:10:48 -04:00
Katherine Cox-Buday 18199da4b7
gnu: Add Go 1.12. 
* gnu/packages/golang.scm (go-1.12): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-18 16:10:44 -04:00
Tobias Geerinckx-Rice aef4c482a3
gnu: mailutils: Add SEARCH CHARSET support. 
* gnu/packages/mail.scm (mailutils)[inputs]: Add libiconv and libunistring.
 2019-03-18 21:08:20 +01:00
Tobias Geerinckx-Rice 330aa6c2fa
gnu: mailutils: Update to 3.6. 
* gnu/packages/mail.scm (mailutils): Update to 3.6.
 2019-03-18 21:08:19 +01:00
Tobias Geerinckx-Rice 9a0681d149
gnu: fdm: Update to 2.0. 
* gnu/packages/mail.scm (fdm): Update to 2.0.
[source]: Remove redundant FILE-NAME.
 2019-03-18 21:08:19 +01:00
Tobias Geerinckx-Rice dc8871efbe
gnu: mutt: Update to 1.11.4. 
* gnu/packages/mail.scm (mutt): Update to 1.11.4.
 2019-03-18 21:08:19 +01:00
Ricardo Wurmus fa5a253866
gnu: Add java-openmpi. 
* gnu/packages/mpi.scm (java-openmpi): New variable.
 2019-03-18 18:24:45 +01:00
Giovanni Biscuolo 4ddf067f21
gnu: Add go-github-com-burntsushi-locker 
* gnu/packages/golang.scm (go-github-com-burntsushi-locker): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-18 13:23:42 -04:00
Sam a91f4eba2c
gnu: Add python-shortuuid. 
* gnu/packages/python-xyz.scm (python-shortuuid): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-18 12:59:08 -04:00
Leo Famulari 4cb0b5bfd7
gnu: OpenTTD: Mention 'game' in synopsis. 
Suggested by swedebugia <swedebugia@riseup.net>.

* gnu/packages/games.scm (openttd-engine)[synopsis]: Mention 'game'.
 2019-03-18 12:11:33 -04:00
Tobias Geerinckx-Rice 15871b520f
gnu: exim: Update to 4.92 [fixes CVE-2018-6789]. 
* gnu/packages/mail.scm (exim): Update to 4.92.
[inputs]: Use bdb-5.3.
 2019-03-18 16:17:51 +01:00
Tobias Geerinckx-Rice 27f172a946
gnu: perl-mail-spf: Clean up. 
* gnu/packages/mail.scm (perl-mail-spf): Re-indent.
[version]: Drop leading ‘v’.
 2019-03-18 16:17:51 +01:00
Tobias Geerinckx-Rice b6c7df92ca
gnu: perl-email-address: Update to 1.912. 
* gnu/packages/mail.scm (perl-email-address): Update to 1.912.
 2019-03-18 16:17:51 +01:00
Tobias Geerinckx-Rice 4bccdb0ff1
gnu: libetpan: Update to 1.9.3. 
* gnu/packages/mail.scm (libetpan): Update to 1.9.3.
 2019-03-18 16:17:51 +01:00
Ricardo Wurmus ee4ca57809
gnu: blasr: Add home page. 
Reported by Efraim Flashner <efraim@flashner.co.il> on IRC.

* gnu/packages/bioinformatics.scm (blasr)[home-page]: Add it.
 2019-03-18 16:02:30 +01:00
Ricardo Wurmus 19bd7f2e79
gnu: Add arriba. 
* gnu/packages/bioinformatics.scm (arriba): New variable.
 2019-03-18 16:00:30 +01:00
Ricardo Wurmus 0dfeb28523
gnu: Add grpc. 
* gnu/packages/machine-learning.scm (grpc): New variable.
 2019-03-18 15:39:45 +01:00
Kei Kebreau e727cb11ef
gnu: xfce4-notifyd: Update to 0.4.3. 
* gnu/packages/xfce.scm (xfce4-notifyd): Update to 0.4.3.
[source]: Use HTTPS.
[inputs]: Add xfce4-panel.
 2019-03-18 10:15:09 -04:00
Kei Kebreau be1e05df5c
gnu: xfce4-taskmanager: Update to 1.2.2. 
* gnu/packages/xfce.scm (xfce4-taskmanager): Update to 1.2.2.
[source]: Use HTTPS.
[inputs]: Add libxmu, libxext and libxt.
 2019-03-18 10:15:09 -04:00
Kei Kebreau 43f2ff1914
gnu: xfce4-power-manager: Update to 1.6.1. 
* gnu/packages/xfce.scm (xfce4-power-manager): Update to 1.6.1.
[source]: Update URL.
 2019-03-18 10:15:09 -04:00
Kei Kebreau 2494cd2338
gnu: xfce4-terminal: Update to 0.8.7.4. 
* gnu/packages/xfce.scm (xfce4-terminal): Update to 0.8.7.4.
[source]: Use HTTPS.
 2019-03-18 10:15:09 -04:00
Kei Kebreau 7cc102f970
gnu: xfdesktop: Update to 4.12.4. 
* gnu/packages/xfce.scm (xfdesktop): Update to 4.12.4.
[source]: Update URL.
 2019-03-18 10:15:09 -04:00
Kei Kebreau 199af14271
gnu: xfwm4: Update to 4.12.5. 
* gnu/packages/xfce.scm (xfwm4): Update to 4.12.5.
[source]: Update URL.
 2019-03-18 10:15:08 -04:00
Kei Kebreau e2120220d4
gnu: thunar: Update to 1.8.4. 
* gnu/packages/xfce.scm (thunar): Update to 1.8.4.
[source]: Update URL.
 2019-03-18 10:15:08 -04:00
Kei Kebreau 1683dcdccd
gnu: xfce4-settings: Update to 4.12.4. 
* gnu/packages/xfce.scm (xfce4-settings): Update to 4.12.4.
[source]: Update URL.
 2019-03-18 10:15:08 -04:00
Kei Kebreau d4986c902a
gnu: xfce4-session: Update to 4.12.1. 
* gnu/packages/xfce.scm (xfce4-session): Update to 4.12.1.
[source]: Update URL.
 2019-03-18 10:15:08 -04:00
Kei Kebreau c8b0f0ab8b
gnu: xfce4-pulseaudio-plugin: Update to 0.4.1. 
* gnu/packages/xfce.scm (xfce4-pulseaudio-plugin): Update to 0.4.1.
 2019-03-18 10:15:02 -04:00
Kei Kebreau ff2c81b0e5
gnu: xfce4-clipman-plugin: Update to 1.4.3. 
* gnu/packages/xfce.scm (xfce4-clipman-plugin): Update to 1.4.3.
 2019-03-18 10:14:20 -04:00
Kei Kebreau 40136e2490
gnu: xfce4-battery-plugin: Update to 1.1.2. 
* gnu/packages/xfce.scm (xfce4-battery-plugin): Update to 1.1.2.
 2019-03-18 10:14:20 -04:00
Kei Kebreau b0f44c67d3
gnu: xfce4-panel: Update to 4.12.2. 
* gnu/packages/xfce.scm (xfce4-panel): Update to 4.12.2.
[source]: Update URL.
 2019-03-18 10:14:19 -04:00
Kei Kebreau c3ad3d924c
gnu: tumbler: Update to 0.2.3. 
* gnu/packages/xfce.scm (tumbler): Update to 0.2.3.
[source]: Update URL.
 2019-03-18 10:14:19 -04:00
Kei Kebreau a281a0837d
gnu: garcon: Update to 0.6.2. 
* gnu/packages/xfce.scm (garcon): Update to 0.6.2.
[source]: Update URL.
 2019-03-18 10:14:19 -04:00
Kei Kebreau 33e6ad8375
gnu: exo: Update to 0.12.4. 
* gnu/packages/xfce.scm (exo): Update to 0.12.4.
[source]: Update URL.
 2019-03-18 10:14:19 -04:00
Kei Kebreau f96cd7cea4
gnu: libxfce4ui: Update to 4.12.1. 
* gnu/packages/xfce.scm (libxfce4ui): Update to 4.12.1.
[source]: Update URL.
 2019-03-18 10:14:19 -04:00
Kei Kebreau 912a81ff16
gnu: xfconf: Update to 4.12.1. 
* gnu/packages/xfce.scm (xfconf): Update to 4.12.1.
[source]: Update URL.
 2019-03-18 10:14:19 -04:00
Tobias Geerinckx-Rice 611a6980dc
gnu: emacs-mew: Update to 6.8. 
* gnu/packages/mail.scm (emacs-mew): Update to 6.8.
 2019-03-18 15:06:14 +01:00
Tobias Geerinckx-Rice 70a8ccb79d
gnu: pcmanfm: Update to 1.3.1. 
* gnu/packages/lxde.scm (pcmanfm): Update to 1.3.1.
 2019-03-18 15:06:14 +01:00
Tobias Geerinckx-Rice b07d593249
gnu: pcmanfm: Don't use NAME in source URI. 
* gnu/packages/lxde.scm (pcmanfm)[source]: Hard-code NAME.
 2019-03-18 15:06:13 +01:00
Tobias Geerinckx-Rice dfc79ae78e
gnu: mpop: Update to 1.4.3. 
* gnu/packages/mail.scm (mpop): Update to 1.4.3.
 2019-03-18 15:06:13 +01:00
Tobias Geerinckx-Rice 822c8501a4
gnu: mpop: Don't use NAME in source URI. 
* gnu/packages/mail.scm (mpop)[source]: Hard-code NAME.
 2019-03-18 15:06:13 +01:00
Tobias Geerinckx-Rice 85e2f212a8
gnu: vips: Improve description. 
* gnu/packages/image-processing.scm (vips)[synopsis, description]: Expand.
 2019-03-18 15:06:12 +01:00
Tobias Geerinckx-Rice 7e52321f87
gnu: vips: Update to 8.7.4. 
* gnu/packages/image-processing.scm (vips): Update to 8.7.4.
 2019-03-18 15:06:12 +01:00
Tobias Geerinckx-Rice 21b9c6fade
Order (gnu packages scanner) module imports alphabetically. 
* gnu/packages/scanner.scm (define-module): Order module imports
alphabetically.
 2019-03-18 15:05:09 +01:00
Tobias Geerinckx-Rice 632c508cdc
gnu: toutenclic: Update to 6.13. 
* gnu/packages/education.scm (toutenclic): Update to 6.13.
 2019-03-18 15:05:09 +01:00
Tobias Geerinckx-Rice 310dbe9ea5
gnu: gtksourceview: Update to 3.24.10. 
* gnu/packages/gtk.scm (gtksourceview): Update to 3.24.10.
 2019-03-18 15:05:09 +01:00
Tobias Geerinckx-Rice f7e4dd5da0
gnu: gtksourceview: Don't use NAME in source URI. 
* gnu/packages/gtk.scm (gtksourceview)[source]: Hard-code NAME.
 2019-03-18 15:05:09 +01:00
ng0 a3f2c295e7
gnu: libextractor: Update to 1.9. 
* gnu/packages/gnunet (libextractor): Update to 1.9.
[source]: Remove patches.
* gnu/packages/patches/libextractor-CVE-2018-20430.patch
gnu/packages/patches/libextractor-CVE-2018-20431.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-03-18 15:05:08 +01:00
ng0 47956fa0c2
Correct name and email address for ng0. 
* .mailmap, Makefile.am, doc/guix.de.texi, doc/guix.fr.texi,
doc/guix.texi, etc/completion/fish/guix.fish,
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/enlightenment.scm, gnu/packages/erlang.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm,
gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm,
gnu/packages/guile-wm.scm,gnu/packages/guile-xyz.scm,
gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm,
gnu/packages/haskell.scm, gnu/packages/image-viewers.scm,
gnu/packages/image.scm, gnu/packages/irc.scm,
gnu/packages/language.scm, gnu/packages/libcanberra.scm,
gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm,
gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm,
gnu/packages/ncurses.scm, gnu/packages/networking.scm,
gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm, gnu/packages/python-xyz.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm,
gnu/packages/rust.scm, gnu/packages/scheme.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm,
gnu/packages/tor.scm, gnu/packages/version-control.scm,
gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm:
Correct name and email address for ng0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-03-18 15:05:08 +01:00
Tobias Geerinckx-Rice ecad6abf26
gnu: ghc-base64-bytestring: Update to 1.0.0.2. 
* gnu/packages/haskell.scm (ghc-base64-bytestring): Update to 1.0.0.2.
 2019-03-18 15:05:07 +01:00
Tobias Geerinckx-Rice 693bcfe222
gnu: ghc-x509-validation: Update to 1.6.11. 
* gnu/packages/haskell-crypto.scm (ghc-x509-validation): Update to 1.6.11.
 2019-03-18 15:05:06 +01:00
Tobias Geerinckx-Rice 25ed60054b
gnu: ghc-x509-store: Update to 1.6.7. 
* gnu/packages/haskell-crypto.scm (ghc-x509-store): Update to 1.6.7.
 2019-03-18 15:05:06 +01:00
Tobias Geerinckx-Rice 1f795ab00e
gnu: ghc-x509: Update to 1.7.5. 
* gnu/packages/haskell-crypto.scm (ghc-x509): Update to 1.7.5.
 2019-03-18 15:05:06 +01:00
Tobias Geerinckx-Rice a8a60101aa
gnu: ghc-entropy: Update to 0.4.1.4. 
* gnu/packages/haskell-crypto.scm (ghc-entropy): Update to 0.4.1.4.
 2019-03-18 15:05:05 +01:00
Ricardo Wurmus f88bdc5ff9
gnu: Add blasr. 
* gnu/packages/bioinformatics.scm (blasr): New variable.
 2019-03-18 14:47:49 +01:00
Ricardo Wurmus 6a6cd48cf0
gnu: Add blasr-libcpp. 
* gnu/packages/bioinformatics.scm (blasr-libcpp): New variable.
 2019-03-18 14:47:45 +01:00
Ricardo Wurmus 55154c5f40
gnu: Add pbbam. 
* gnu/packages/bioinformatics.scm (pbbam): New variable.
 2019-03-18 14:47:26 +01:00
Lprndn b9c88c2292
gnu: Add arcan-wayland. 
* gnu/packages/arcan.scm (arcan-wayland): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-18 10:51:06 +01:00
Lprndn 38ffa53e27
gnu: Add xarcan. 
* gnu/packages/arcan.scm (xarcan): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-18 10:51:06 +01:00
Ludovic Courtès 5ddf98dadd
gnu: inputattach: Build with -O2. 
* gnu/packages/linux.scm (inputattach)[arguments]: Pass "-O2" to GCC.
 2019-03-18 10:51:06 +01:00
Tim Gesthuizen 97ab799afe
gnu: Add inputattach service. 
Add a service that runs inputattach as a daemon to translate events from
serial ports.

* gnu/services/desktop.scm (<inputattach-configuration>): New record type.
* gnu/services/desktop.scm (inputattach-service-type): New service type.
* doc/guix.texi (Miscellaneous Services): Add inputattach Service
  subsubheading.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-18 10:51:06 +01:00
Tim Gesthuizen bf2a9969a2
gnu: Add inputattach 
* gnu/packages/linux.scm (inputattach): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-18 10:51:06 +01:00