Commit Graph

13455 Commits

Author SHA1 Message Date
Ludovic Courtès 35e4b3d546
gnu: iptables: Mention "firewall".
Suggested by ng0 <ng0@we.make.ritual.n0.is>.

* gnu/packages/linux.scm (iptables)[description]: Mention "firewall".
2016-07-29 17:32:03 +02:00
Eric Le Bihan 7c6bdeec23
gnu: Add s6-networking.
* gnu/packages/skarnet.scm (s6-networking): New variable.

Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-29 17:29:50 +02:00
Eric Le Bihan 798b776deb
gnu: Add s6-dns.
* gnu/packages/skarnet.scm (s6-dns): New variable.

Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-29 17:29:50 +02:00
Eric Le Bihan 918cee467d
gnu: Add s6.
* gnu/packages/skarnet.scm (s6): New variable.

Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-29 17:29:50 +02:00
Eric Le Bihan 2f016ac150
gnu: execline: Update to 2.1.5.0.
* gnu/packages/skarnet.scm (execline): Update to 2.1.5.0.

Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-29 17:29:50 +02:00
Eric Le Bihan 892aa89477
gnu: skalibs: Update to 2.3.10.0.
* gnu/packages/skarnet.scm (skalibs): Update to 2.3.10.0.

Signed-off-by: Eric Le Bihan <eric.le.bihan.dev@free.fr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-29 17:29:50 +02:00
Danny Milosavljevic 2614de3c5a
gnu: Add stellarium.
* gnu/local.mk: Include gnu/packages/education.scm .
* gnu/packages/education.scm: Add new file.
* gnu/packages/education.scm (stellarium): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-29 17:29:50 +02:00
Leo Famulari ba9e2ee64a
gnu: spice-gtk: Propagate SPICE-PROTOCOL.
* gnu/packages/spice.scm (spice-gtk)[inputs]: Move SPICE-PROTOCOL to...
[propagated-inputs]: ... here.
2016-07-29 11:16:23 -04:00
Leo Famulari 0d05a739d2
gnu: usbredir: Propagate LIBUSB.
* gnu/packages/spice.scm (usbredir)[inputs]: Replace field with ...
[propagated-inputs]: ... new field.
2016-07-29 11:16:23 -04:00
Ludovic Courtès 6e6ddebf48
gnu: guix: Add dependency on zlib.
* gnu/packages/package-management.scm (guix-0.10.0)[inputs]: Add ZLIB.
2016-07-29 11:39:30 +02:00
Ludovic Courtès 57c7e46d39
tests: Improve synchronization in 'tests/guix-register.sh'.
* tests/guix-register.sh: When launching guix-daemon, add retry loop
around 'open-connection'.  This fixes test failures that could occur
under heavy load where the daemon's socket file wouldn't be ready yet
when the client connects.
2016-07-29 11:39:30 +02:00
Alex Griffin 61201e46a7
gnu: password-store: Wrap PATH.
* gnu/packages/password-utils.scm (password-store)
[arguments]: Wrap PATH more thoroughly.
[native-inputs]: Move getopt to inputs.
[inputs]: Add sed.

Signed-off-by: Mathieu Lirzin <mthl@gnu.org>
2016-07-29 11:00:31 +02:00
Ludovic Courtès f33e71fca2
gnu: perl-dbd-pg: Add description.
* gnu/packages/databases.scm (perl-dbd-pg)[description]: Add non-empty
description.
2016-07-29 10:22:31 +02:00
Ludovic Courtès bd883da3e3
build: Bump version number.
* configure.ac: Change version to 0.11.0.
2016-07-29 10:15:56 +02:00
Ludovic Courtès a3947cb1b8
gnu: Sync GNU descriptions with upstream.
From 'guix lint -c gnu-description'.

* gnu/packages/gnunet.scm (gnunet): Adjust description.
* gnu/packages/marst.scm (marst): Likewise.
* gnu/packages/maths.scm (c-graph): Likewise.
* gnu/packages/networking.scm (macchanger): Likewise.
2016-07-29 10:13:12 +02:00
Nicolas Goaziou c777570b57
gnu: Add sshpass.
* gnu/packages/ssh.scm (sshpass): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-29 00:04:39 +02:00
Leo Famulari cfbb3b0d00
gnu: python-beautifulsoup4: Update to 4.5.0.
* gnu/packages/python.scm (python-beautifulsoup4, python2-beautifulsoup4):
Update to 4.5.0.
2016-07-28 17:50:52 -04:00
ng0 adca268e97
gnu: perl-devel-symdump: Update to 2.17.
* gnu/packages/perl.scm (perl-devel-symdump): Update to 2.17.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-28 17:41:06 -04:00
David Craven 6144dff516
gnu: Add virt-viewer.
* gnu/packages/spice.scm (virt-viewer): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-28 17:08:42 -04:00
David Craven 33b0f4a4b2
gnu: Add spice-vdagent.
* gnu/packages/spice.scm (spice-vdagent): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-28 17:08:42 -04:00
David Craven 3cbd37e440
gnu: Add spice.
* gnu/packages/spice.scm (spice): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-28 17:08:42 -04:00
David Craven bb28cf90e9
gnu: Add spice-gtk.
* gnu/packages/spice.scm (spice-gtk): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-28 17:08:42 -04:00
David Craven 289e472f56
gnu: Add spice-protocol.
* gnu/packages/spice.scm (spice-protocol): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-28 17:08:41 -04:00
David Craven 2ef2654de4
gnu: Add virglrenderer.
* gnu/packages/spice.scm (virglrenderer): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-28 17:08:41 -04:00
David Craven 1d2c67c11e
gnu: Add usbredir.
* gnu/packages/spice.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-28 17:08:41 -04:00
Leo Famulari a1dfa02233
Revert "gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207]."
This reverts commit ae46cd0e4c.
2016-07-28 16:45:02 -04:00
Ludovic Courtès 4e3bfaf406
guix package: Suggest prefix search path settings.
* guix/scripts/package.scm (build-and-use-profile): Pass #:kind 'prefix
to 'display-search-paths'.
2016-07-28 20:07:59 +02:00
Mark H Weaver ae46cd0e4c
gnu: gd: Update to 2.2.3 [fixes CVE-2016-6207].
* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch,
gnu/packages/patches/gd-fix-test-on-i686.patch: Delete files.
* gnu/packages/patches/gd-fix-tests-on-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/gd.scm (gd): Update to 2.2.3.
[source]: Update patches field accordingly.
2016-07-28 14:06:12 -04:00
Ludovic Courtès 386b71d1b9
gnu: commencement: 'guile-final' is now "hidden".
This way, we no longer have this annoying warning:

  $ guix build guile -n
  guix build: warning: ambiguous package specification `guile'
  guix build: warning: choosing guile-2.0.11 from gnu/packages/guile.scm:128:2

* gnu/packages/commencement.scm (guile-final): Use 'hidden-package'.
* tests/packages.scm ("fold-packages, hidden package"): New test.
2016-07-28 18:53:13 +02:00
Ludovic Courtès 6980511b73
packages: Add 'hidden-package'.
* guix/packages.scm (hidden-package, hidden-package?): New procedures.
* gnu/packages.scm (fold-packages): Filter out 'hidden-package?'.
* tests/packages.scm ("hidden-package"): New test.
2016-07-28 18:50:43 +02:00
Alex Griffin cb55f9c652
gnu: Add asciinema.
* gnu/packages/terminals.scm (asciinema): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-28 15:43:40 +02:00
Alex Griffin 71d9b98078
gnu: gnome: Propagate file-roller.
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add file-roller.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-28 15:42:30 +02:00
Ludovic Courtès d222522edf
doc: Discourage software bundling.
Fixes <http://bugs.gnu.org/24008>.
Suggested by ng0 <ng0@we.make.ritual.n0.is>.

* doc/contributing.texi (Submitting Patches): Add item about bundling.
2016-07-28 15:41:00 +02:00
ng0 3a78fab83d
doc: Send changes in your patch which are related.
* doc/contributing.texi (Submitting Patches): New @item:
This gives information about sending related changes and examples on
what we view as related changes.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-07-28 15:38:14 +02:00
Ludovic Courtès 189b1543cb
doc: Mention separate branch for packages with many dependents.
Suggested by ng0 <ng0@we.make.ritual.n0.is>.

* doc/contributing.texi (Submitting Patches): Add note on packages with
more than 100 dependents.
2016-07-28 15:24:37 +02:00
Ben Woodcroft 6547708f71
gnu: r-genomicfeatures: Update to 1.24.5.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.5.
2016-07-28 21:54:44 +10:00
Ben Woodcroft 2c9f6251fc
gnu: r-bsgenome: Update to 1.40.1.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1.
2016-07-28 21:45:17 +10:00
Ben Woodcroft b0f0778a7c
gnu: r-iranges: Update to 2.6.1.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1.
2016-07-28 21:45:17 +10:00
Ben Woodcroft f403941f81
gnu: r-limma: Update to 3.28.17.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17.
2016-07-28 21:45:16 +10:00
Ben Woodcroft 2b2ff0bd91
gnu: r-xvector: Update to 0.12.1.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1.
2016-07-28 21:45:16 +10:00
Ben Woodcroft a463055862
gnu: r-genomicranges: Update to 1.24.2.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.2.
2016-07-28 21:45:16 +10:00
Ben Woodcroft bab15ccec4
gnu: r-annotationdbi: Update to 1.34.4.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.4.
2016-07-28 21:45:15 +10:00
Ben Woodcroft a22999f245
gnu: r-biocparallel: Update to 1.6.3.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3.
2016-07-28 21:45:15 +10:00
Ben Woodcroft d104fc607d
gnu: r-biostrings: Update to 2.40.2.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2.
2016-07-28 21:45:15 +10:00
Ben Woodcroft 1864e051c9
gnu: r-summarizedexperiment: Update to 1.2.3.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.3.
2016-07-28 21:45:15 +10:00
Ben Woodcroft 29b0cc8ad5
gnu: r-genomicalignments: Update to 1.8.4.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.4.
2016-07-28 21:45:14 +10:00
Ben Woodcroft 5131e21064
gnu: r-rtracklayer: Update to 1.32.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2.
2016-07-28 21:45:14 +10:00
Ben Woodcroft 2a3e325f5e
gnu: r-genomeinfodb: Update to 1.8.3.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3.
2016-07-28 21:45:14 +10:00
Ben Woodcroft f2e791750b
gnu: r-s4vectors: Update to 0.10.2.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2.
2016-07-28 20:13:42 +10:00
Leo Famulari e335b82c4e
gnu: mysql: Update to 5.7.13 [fixes CVE-2016-{3477,3521,3615,5440}].
* gnu/packages/patches/mysql-fix-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (mysql): Update to 5.7.13.
2016-07-28 02:08:49 -04:00