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42399 Commits

Author SHA1 Message Date
Ricardo Wurmus f613f9ae26
gnu: r-ldblock: Update to 1.12.1. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.12.1.
 2019-04-06 23:13:26 +02:00
Ricardo Wurmus 8f30d38238
gnu: r-ensembldb: Update to 2.6.8. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.8.
 2019-04-06 23:13:26 +02:00
Ricardo Wurmus f2f89e9a4c
gnu: r-rjava: Update to 0.9-11. 
* gnu/packages/cran.scm (r-rjava): Update to 0.9-11.
 2019-04-06 23:13:25 +02:00
Ricardo Wurmus b85a5f3bcc
gnu: r-optparse: Update to 1.6.2. 
* gnu/packages/cran.scm (r-optparse): Update to 1.6.2.
 2019-04-06 23:13:25 +02:00
Ricardo Wurmus 24be014e0a
gnu: r-spdep: Update to 1.1-2. 
* gnu/packages/cran.scm (r-spdep): Update to 1.1-2.
 2019-04-06 23:13:25 +02:00
Ricardo Wurmus 3c18fb1314
gnu: r-bedr: Update to 1.0.7. 
* gnu/packages/cran.scm (r-bedr): Update to 1.0.7.
 2019-04-06 23:13:25 +02:00
Ricardo Wurmus 9e896d389d
gnu: r-rspectra: Update to 0.14-0. 
* gnu/packages/cran.scm (r-rspectra): Update to 0.14-0.
 2019-04-06 23:13:25 +02:00
Ricardo Wurmus 30918ce8fc
gnu: r-flextable: Update to 0.5.2. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.2.
[propagated-inputs]: Add r-base64enc; remove r-magick.
 2019-04-06 23:13:24 +02:00
Ricardo Wurmus 55a3da9246
gnu: r-insight: Update to 0.2.0. 
* gnu/packages/cran.scm (r-insight): Update to 0.2.0.
 2019-04-06 23:13:24 +02:00
Ricardo Wurmus 20a485794e
gnu: r-network: Update to 1.15. 
* gnu/packages/cran.scm (r-network): Update to 1.15.
 2019-04-06 23:13:24 +02:00
Ricardo Wurmus a2befb3751
gnu: r-xfun: Update to 0.6. 
* gnu/packages/cran.scm (r-xfun): Update to 0.6.
 2019-04-06 23:13:24 +02:00
Ricardo Wurmus 987b080469
gnu: r-extremes: Update to 2.0-10. 
* gnu/packages/cran.scm (r-extremes): Update to 2.0-10.
[propagated-inputs]: Remove r-car.
 2019-04-06 23:13:24 +02:00
Ricardo Wurmus 5686da7608
gnu: r-distillery: Update to 1.0-6. 
* gnu/packages/cran.scm (r-distillery): Update to 1.0-6.
 2019-04-06 23:13:23 +02:00
Ricardo Wurmus b15c5c0ef9
gnu: r-circlize: Update to 0.4.6. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.6.
 2019-04-06 23:13:23 +02:00
Ricardo Wurmus 0b8ef65555
gnu: r-httpuv: Update to 1.5.1. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.1.
 2019-04-06 23:13:23 +02:00
Ricardo Wurmus 0a2c188cc5
gnu: r-gdtools: Update to 0.1.8. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.8.
[native-inputs]: Move r-rcpp from here...
[propagated-inputs]: ...to here.
 2019-04-06 23:13:23 +02:00
Ricardo Wurmus fa7e82acd9
gnu: r-rlang: Update to 0.3.3. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.3.
 2019-04-06 23:13:23 +02:00
Ricardo Wurmus f1434d80d6
gnu: r-survival: Update to 2.44-1.1. 
* gnu/packages/statistics.scm (r-survival): Update to 2.44-1.1.
 2019-04-06 23:13:23 +02:00
Ricardo Wurmus 6b56ce6db5
gnu: r-mass: Update to 7.3-51.3. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.3.
 2019-04-06 23:13:23 +02:00
Ricardo Wurmus 45197401df
gnu: r-cluster: Update to 2.0.8. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.8.
 2019-04-06 23:13:22 +02:00
Efraim Flashner 3b5671a3fa
gnu: python-certifi: Update to 2019.3.9. 
* gnu/packages/python-crypto.scm (python-certifi): Update to 2019.3.9.
 2019-04-06 22:50:39 +03:00
Ludovic Courtès 177bc62d63
services: wpa-supplicant: Log to syslog. 
* gnu/services/networking.scm (wpa-supplicant-shepherd-service): Pass
"-s" to 'wpa_supplicant'.  Add 'syslogd' to 'requirement'.
 2019-04-05 17:55:51 +02:00
Ludovic Courtès 1361584983
services: localed: Do nothing for unconfigured keyboards. 
* gnu/services/xorg.scm (localed-service-type)[package]: Return the
empty list when the 'keyboard-layout' field is #f.
[compose]: Use 'find' instead of 'first'.
 2019-04-05 17:55:51 +02:00
Ludovic Courtès 3ef3bdf1cd
services: localed: Properly handle lack of a 'keyboard-layout'. 
Fixes a type error when KEYBOARD-LAYOUT is #f.

* gnu/services/xorg.scm (localed-dbus-service): Return the empty list
when KEYBOARD-LAYOUT is #f.
 2019-04-05 17:55:50 +02:00
Ludovic Courtès 0cf981a606
services: gdm: Properly handle empty extensions lists. 
Fixes a bug whereby not extending GDM would lead us to do:

  (first '())

in the 'compose' method.

Regression introduced in 305a732a0a.

* gnu/services/xorg.scm (gdm-service-type)[compose]: Handle the case
where EXTENSIONS is empty.
[extend]: Handle the case where XORG-CONFIGURATION is #f.
 2019-04-05 17:55:50 +02:00
Oleg Pykhalov 37aaf9a8c7
gnu: emacs-undohist-el: Apply 'emacs-undohist-ignored.patch'. 
This commit follows 3dbd240937.

* gnu/packages/emacs-xyz.scm (emacs-undohist-el)[source]: Add
'emacs-undohist-ignored.patch'.
 2019-04-05 18:52:30 +03:00
Brian Leung 3dbd240937
gnu: Add emacs-undohist-el. 
* gnu/packages/patches/emacs-undohist-ignored.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add this.
* gnu/packages/emacs-xyz.scm (emacs-undohist-el): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-04-05 18:44:05 +03:00
Ludovic Courtès 3a665637af
services: console-keymap: Deprecate. 
* gnu/services/base.scm (console-keymap-service): Mark as deprecated.
* doc/guix.texi (Base Services): Remove its documentation.
 2019-04-05 15:39:35 +02:00
Ludovic Courtès a31af2beee
doc: Explain how to change the keyboard layout at run time. 
* doc/guix.texi (Keyboard Layout): Mention GNOME's "Region & Language",
setxkbmap, and loadkeys.
 2019-04-05 15:39:35 +02:00
Ludovic Courtès 305a732a0a
services: xorg: Add 'set-xorg-configuration'. 
* gnu/services/xorg.scm (gdm-service-type)[compose, extend]: New fields.
(set-xorg-configuration): New procedure.
* doc/guix.texi (Keyboard Layout): Use it.
(X Window): Document it.
* gnu/system/examples/desktop.tmpl: Add 'keyboard-layout' fields.
 2019-04-05 15:39:35 +02:00
Ludovic Courtès 607fcc7540
services: Add 'localed' service type and have GDM extend it. 
This fixes a bug whereby GDM would always switch to US English keyboard
layout regardless to the configured Xorg keyboard layout.

* gnu/services/xorg.scm (<localed-configuration>): New record type.
(localed-dbus-service): New procedure.
(localed-service-type): New variable.
(gdm-service-type): Extend LOCALED-SERVICE-TYPE.
 2019-04-05 15:39:35 +02:00
Ludovic Courtès aa071ca049
services: dbus: 'wrapped-dbus-service' accepts a list of variables. 
* gnu/services/dbus.scm (wrapped-dbus-service): Replace 'variable' and
'value' by 'variables', and adjust code accordingly.
* gnu/services/desktop.scm (upower-dbus-service):
(geoclue-dbus-service, elogind-dbus-service): Adjust accordingly.
 2019-04-05 15:39:35 +02:00
Ludovic Courtès f63861b5a6
gnu: Add localed, extracted from systemd. 
* gnu/packages/freedesktop.scm (localed): New variable.
* gnu/packages/patches/localed-xorg-keyboard.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-04-05 15:39:35 +02:00
Ludovic Courtès b68f65007f
services: dbus: Add 'wrapped-dbus-service'. 
* gnu/services/desktop.scm (wrapped-dbus-service): Move to...
* gnu/services/dbus.scm (wrapped-dbus-service): ... here.  New
procedure.
 2019-04-05 15:39:35 +02:00
Jelle Licht 208946e1f3
gnu: emacs-cider: Update to 0.21.0. 
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 0.21.0.
 2019-04-05 14:06:03 +02:00
Efraim Flashner 4354569dd8
gnu: subversion: Update to 1.10.4 (fixes CVE-2018-11803). 
* gnu/packages/version-control.scm (subversion): Update to 1.10.4.
 2019-04-05 09:50:12 +03:00
Efraim Flashner 2beca2a55c
gnu: flac: Fix CVE-2017-6888. 
* gnu/packages/xiph.scm (flac)[replacement]: New field.
(flac/fixed): New variable.
* gnu/packages/patches/flac-CVE-2017-6888.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-04-05 09:50:07 +03:00
Mark H Weaver 6e5ecbfbae
gnu: linux-libre: Update to 5.0.6. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.6.
(%linux-libre-hash): Update hash.
 2019-04-05 01:05:50 -04:00
Mark H Weaver 68bf7997eb
gnu: linux-libre@4.19: Update to 4.19.33. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.33.
(%linux-libre-4.19-hash): Update hash.
 2019-04-05 01:04:46 -04:00
Mark H Weaver aba41c05d9
gnu: linux-libre@4.14: Update to 4.14.110. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.110.
(%linux-libre-4.14-hash): Update hash.
 2019-04-05 01:02:49 -04:00
Mark H Weaver e22c31d376
gnu: linux-libre@4.9: Update to 4.9.167. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.167.
 2019-04-05 01:01:55 -04:00
Mark H Weaver 21c6c52bc6
gnu: linux-libre@4.4: Update to 4.4.178. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.178.
 2019-04-05 01:00:28 -04:00
Tobias Geerinckx-Rice 17499793b1
gnu: flashrom: Update to 1.0.1. 
* gnu/packages/flashing-tools.scm (flashrom): Update to 1.0.1.
[arguments]: Remove CFLAGS work-around.
 2019-04-05 06:25:24 +02:00
Tobias Geerinckx-Rice 06effaf6a1
gnu: entr: Update to 4.2. 
* gnu/packages/entr.scm (entr): Update to 4.2.
 2019-04-05 06:25:24 +02:00
Tobias Geerinckx-Rice 9859800f5d
gnu: ledger: Update to 3.1.3. 
The patch applies but has been unnecessary since 3.1.2.

* gnu/packages/finance.scm (ledger): Update to 3.1.3.
[source]: Remove obsolete patch.
* gnu/packages/patches/ledger-fix-uninitialized.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-04-05 06:25:24 +02:00
Nicolas Goaziou 54c9d7bb69
gnu: emacs-matrix-client: Add missing require. 
* gnu/packages/emacs-xyz.scm (emacs-matrix-client): Add a missing require to
  prevent a runtime error.
 2019-04-04 21:46:45 +02:00
Julien Lepiller a779689714
gnu: php: Update to 7.3.4. 
* gnu/packages/php.scm (php): Update to 7.3.4.
 2019-04-04 21:39:01 +02:00
Leo Famulari 9fa29103b5
gnu: certbot, python-acme: Update to 0.33.0. 
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.33.0.
 2019-04-04 14:58:31 -04:00
Leo Famulari 60e1668076
gnu: MPD: Update to 0.21.7. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.7.
 2019-04-04 14:58:28 -04:00
Nicolas Goaziou 325a2e35dc
gnu: asymptote: Fix direntry in info file. 
* gnu/packages/plotutils.scm (asymptote): Fix direntry in info file.
 2019-04-04 20:16:40 +02:00