aad948a0ea
gnu: r-tibble: Update to 1.3.3.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3.
[propagated-inputs]: Remove r-lazyeval, add r-rlang.
2017-08-03 17:53:43 +02:00
a40b2c2129
gnu: r-dplyr: Update to 0.7.2.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2.
[propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue,
r-pkgconfig, r-bindrcpp.
2017-08-03 17:53:42 +02:00
4bb0b4cc0a
gnu: Add r-bindrcpp.
...
* gnu/packages/cran.scm (r-bindrcpp): New variable.
2017-08-03 17:53:42 +02:00
eed58a0886
gnu: Add r-bindr.
...
* gnu/packages/cran.scm (r-bindr): New variable.
2017-08-03 17:53:42 +02:00
a8cba9dd11
gnu: r-rcpp: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-rcpp): Move from here...
* gnu/packages/cran.scm (r-rcpp): ...to here.
2017-08-03 17:53:42 +02:00
736332c79c
gnu: r-rcpp: Update to 0.12.12.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
2017-08-03 17:53:42 +02:00
847b457253
gnu: r-plogr: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-plogr): Move from here...
* gnu/packages/cran.scm (r-plogr): ...to here.
2017-08-03 17:53:41 +02:00
5bee6bf409
gnu: Add r-glue.
...
* gnu/packages/cran.scm (r-glue): New variable.
2017-08-03 17:53:41 +02:00
dd4b7476ec
gnu: Add grub-hybrid.
...
* gnu/packages/bootloaders.scm (grub-hybrid): New variable.
2017-08-03 16:35:34 +02:00
75e6639f36
gnu: htseq: Use PyPI URI.
...
This is a follow-up to 92971d68ac
2017-08-03 21:08:13 +10:00
92971d68ac
gnu: htseq: Update to 0.9.1.
...
* gnu/packages/bioinformatics.scm (htseq): Update to 0.9.1.
[arguments]: Use python-3 by removing field.
[native-inputs]: Add 'python-cython'.
[propagated-inputs]: Use python3 numpy package.
[inputs]: Use python3 pysam package. Add 'python-matplotlib'.
(python2-htseq): New variable.
(clipper)[inputs]: Use it.
2017-08-03 21:02:30 +10:00
a8ead6f91b
gnu: vc: Limit to x86_64 and i686.
...
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-03 13:34:18 +03:00
5638d71502
gnu: openscenegraph: Add 'Release' configure flag.
...
* gnu/packages/graphics.scm (openscenegraph)[arguments]: Add "-DCMAKE_BUILD_TYPE=Release".
2017-08-03 10:35:31 +03:00
68a29ab8d0
gnu: Add LeoCAD.
...
* gnu/packages/lego.scm (leocad): New variable.
2017-08-03 00:33:02 -05:00
5d8312f1c6
gnu: youtube-dl: Update to 2017.07.30.1.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.30.1.
2017-08-03 05:31:24 +02:00
6862c72373
gnu: tor: Update to 0.3.0.10.
...
* gnu/packages/tor.scm (tor): Update to 0.3.0.10.
2017-08-03 01:56:22 +02:00
49962b15a1
activation: Make sure /etc exists.
...
Fixes <http://bugs.gnu.org/27146 >.
Reported by ng0 <ng0@pragmatique.xyz>.
* gnu/build/activation.scm (activate-etc): Add call to 'mkdir-p'.
2017-08-03 00:35:59 +02:00
edd08fb7ac
gnu: glibc@2.22: Fix security issues.
...
Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}.
* gnu/packages/base.scm (glibc@2.22 )[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:35 +03:00
a0ae64a334
gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.
...
* gnu/packages/base.scm (glibc@2.23 )[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2016-3075.patch,
gnu/packages/patches/glibc-CVE-2016-3706.patch,
gnu/packages/patches/glibc-CVE-2016-4429.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-08-02 21:51:33 +03:00
575e5e4e51
gnu: glibc@2.24: Fix CVE-2015-5180.
...
* gnu/packages/base.scm (glibc@2.24 )[source]: Add patch.
* gnu/packages/patches/glibc-CVE-2015-5180.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:31 +03:00
2c5cf84430
gnu: python2-conda: Fix build by building with enum34.
...
* gnu/packages/package-management.scm (python2-conda): Use 'python2-variant'.
[native-inputs]: Add python2-enum34.
2017-08-02 14:39:33 -04:00
9ef5940ce4
gnu: calibre: Add python2-msgpack as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-msgpack.
2017-08-02 20:20:12 +03:00
721d7a6912
gnu: gcc@4.7: Don't built on aarch64.
...
* gnu/packages/gcc.scm (gcc@4.7, gcc@4.8, gcc@4.9)[supported-systems]:
New field.
2017-08-02 19:14:26 +03:00
696f1d0fb1
gnu: libpng-apng: Be sure to apply the APNG patch.
...
* gnu/packages/image.scm (libpng-apng)[arguments]: Check the return status of
the patching procedures.
2017-08-02 11:17:57 -04:00
e0958c2df8
gnu: libpng-apng: Update to 1.6.28.
...
Fixes <https://bugs.gnu.org/27556 >.
* gnu/packages/image.scm (libpng-apng): Update to 1.6.28.
Remove inherit of 'libpng'.
[version]: Use own version, remove 'package-version libpng'.
[source]: Don't inherit the source of libpng.
[arguments]: Update hash of libpng-apng source.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-02 11:10:31 -04:00
33485fa913
gnu: eyed3: Update to 0.8, build with python3.
...
* gnu/packages/mp3.scm (eyed3): [source] Update to 0.8.
[arguments]: Disable tests; don't use python-2.
[propagated-inputs]: Add python-six and python-grako.
[native-inputs]: Remove.
2017-08-02 14:08:33 +02:00
a70b03d413
gnu: Add python-grako
...
* gnu/packages/python.scm (python-grako): New variable.
2017-08-02 14:08:33 +02:00
0abf526420
gnu: hdf4: Update to 4.12.13.
...
* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
2017-08-02 14:08:24 +02:00
ced2d2b7ca
gnu: libvirt: Update to 3.6.0.
...
* gnu/packages/virtualization.scm (libvirt): Update to 3.6.0.
2017-08-02 07:15:21 +02:00
2e508b6dc0
gnu: libvirt: Use HTTPS.
...
* gnu/packages/virtualization.scm (libvirt)[source, home-page]: Use HTTPS.
2017-08-02 07:15:21 +02:00
2f06dc0435
gnu: Add r-rlang.
...
* gnu/packages/statistics.scm (r-rlang): New variable.
2017-08-02 00:57:39 +02:00
f1915a5dd0
gnu: r-deseq2: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.1.
2017-08-02 00:33:23 +02:00
fd215c2978
gnu: r-annotationforge: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.1.
2017-08-02 00:33:07 +02:00
bd4a0bab5f
gnu: r-category: Update to 2.42.1.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.1.
2017-08-02 00:32:46 +02:00
0ff478344b
gnu: r-biocstyle: Update to 2.4.1.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.4.1.
2017-08-02 00:32:31 +02:00
9c4348d8c4
gnu: r-dnacopy: Update to 1.50.1.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.1.
2017-08-02 00:32:11 +02:00
3ec25eb2a8
gnu: r-iranges: Update to 2.10.2.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.2.
2017-08-02 00:31:46 +02:00
6252dd0f15
gnu: r-genomeinfodb: Update to 1.12.2.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.12.2.
2017-08-02 00:31:28 +02:00
48f5d283b2
gnu: r-variantannotation: Update to 1.22.3.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.3.
2017-08-02 00:31:08 +02:00
1b4738e23c
gnu: r-limma: Update to 3.32.5.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.5.
2017-08-02 00:30:49 +02:00
1898a7832f
gnu: r-biobase: Update to 2.36.2.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.2.
2017-08-02 00:30:27 +02:00
62eb93a7d0
gnu: r-annotationdbi: Update to 1.38.2.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.2.
2017-08-02 00:28:32 +02:00
0c6494a1db
gnu: r-biomart: Update to 2.32.1.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.1.
2017-08-02 00:28:16 +02:00
1ff74d074e
gnu: r-biocparallel: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.1.
2017-08-02 00:27:57 +02:00
5077bc3e2e
gnu: r-biostrings: Update to 2.44.2.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.2.
2017-08-02 00:27:35 +02:00
adf5d0a0bc
gnu: r-delayedarray: Update to 0.2.7.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.2.7.
2017-08-02 00:27:16 +02:00
f41150f13d
gnu: r-summarizedexperiment: Update to 1.6.3.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.6.3.
2017-08-02 00:26:55 +02:00
26760c80cd
gnu: r-genomicalignments: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.1.
2017-08-02 00:26:33 +02:00
15afa9bf8f
gnu: r-rtracklayer: Update to 1.36.4.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4.
2017-08-02 00:26:00 +02:00
8cfaa9ab4e
gnu: r-genomicfeatures: Update to 1.28.4.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4.
2017-08-02 00:25:26 +02:00
9eb2714625
gnu: r-copywriter: Update to 2.8.1.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1.
2017-08-02 00:25:00 +02:00
bfa0d1e773
gnu: r-sva: Update to 3.24.4.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4.
2017-08-02 00:24:27 +02:00
8060a61798
gnu: r-rsqlite: Update to 2.0.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
2017-08-02 00:23:16 +02:00
796237a9a4
gnu: Add r-blob.
...
* gnu/packages/statistics.scm (r-blob): New variable.
2017-08-02 00:22:33 +02:00
aa184803f8
gnu: Add r-pkgconfig.
...
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
2017-08-02 00:21:40 +02:00
fc8f0631b4
gnu: re2: Update to 2017-08-01.
...
* gnu/packages/regex.scm (re2): Update to 2017-08-01.
2017-08-01 23:37:20 +02:00
1926fd2baa
gnu: maim: Update to 5.4.66.
...
* gnu/packages/xdisorg.scm (maim): Update to 5.4.66.
2017-08-01 23:35:31 +02:00
7d960db1e3
gnu: slop: Update to 7.3.48.
...
* gnu/packages/xdisorg.scm (slop): Update to 7.3.48.
2017-08-01 23:35:03 +02:00
b73e49f595
gnu: git: Update to 2.13.4.
...
* gnu/packages/version-control.scm (git): Update to 2.13.4.
2017-08-01 23:34:41 +02:00
14fce399cc
gnu: r-foreign: Update hash after upstream tarball change.
...
* gnu/packages/statistics.scm (r-foreign): Update hash. The only difference
in the tarball is the metadata. The contents are identical.
2017-08-01 23:07:58 +02:00
cdf124c607
gnu: r-foreign: Remove duplicate recipe.
...
* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe.
2017-08-01 23:06:02 +02:00
d0386db493
gnu: rapidjson: Update to 1.1.0.
...
* gnu/packages/web.scm (rapidjson): Update to 1.1.0.
[source]: Remove snippet.
2017-08-01 14:42:44 -04:00
f2e1271809
gnu: Add pidentd.
...
* gnu/packages/networking.scm (pidentd): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 20:57:51 +03:00
89c9445aa2
gnu: hyperrogue: Update to 10.0e.
...
* gnu/packages/games.scm (hyperrogue): Update to 10.0e.
[arguments]: Adjust accordingly.
2017-08-01 12:14:54 -04:00
d931a4bbeb
gnu: metabat: Limit to x86_64 and i686 only.
...
* gnu/packages/bioinformatics.scm (metabat)[supported-systems]: New field.
2017-08-01 17:28:35 +03:00
4bfdf034e2
gnu: Add emacs-yasnippet-snippets.
...
* gnu/packages/emacs.scm (emacs-yasnippet-snippets): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:33:07 +02:00
1f0d47059d
gnu: emacs-yasnippet: Upgrade to 0.12.0.
...
* gnu/packages/emacs.scm (emacs-yasnippet): Upgrade to 0.12.0.
[source]: Remove an uninstalled directory from yas-snippet-dirs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:32:59 +02:00
04b6d6f7f7
gnu: guile-ssh: Update to 0.11.2.
...
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-ssh-channel-finalization.patch,
gnu/packages/patches/guile-ssh-double-free.patch,
gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-08-01 15:32:07 +02:00
12235a124f
gnu: artanis: Unbundled guile-json and version according to documentation.
...
* gnu/packages/guile.scm (artanis): Unbundled guile-json and version
according to documentation.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:32:07 +02:00
269504a797
gnu: python-pbr-minimal: Update to 3.0.1
...
* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1
[source]: Update hash and remove patch.
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 15:21:52 +03:00
3d0fbd3c2f
gnu: libgit2: Enable SHA-1 collision detection.
...
* gnu/packages/version-control.scm (libgit2)[arguments]: Enable '-DUSE_SHA1DC'
in #:configure-flags.
2017-08-01 01:02:53 -04:00
befb2c0e6e
gnu: ruby-bio-commandeer: Update to 0.2.0.
...
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.2.0.
2017-08-01 14:09:07 +10:00
e1ecc8908e
gnu: libmicrohttpd: Update to 0.9.55.
...
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.55.
[arguments]: Add 'add-missing-LDFLAGS' phase.
2017-07-31 22:51:34 +02:00
a6b5af0cff
gnu: xf86-video-intel: Update snapshot.
...
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2100efa.
Introduce 'revision' variable.
2017-07-31 22:10:34 +02:00
f0732ee485
gnu: guile-bytestructures: Install .go files to lib/guile/X.Y.
...
* gnu/packages/guile.scm (guile-bytestructures)[arguments]: Install .go
files to OBJECT-DIR, defined as OUT/lib/guile/X.Y/site-ccache.
2017-07-31 17:36:24 +02:00
54727850c3
gnu: tor: Remove '--enable-expensive-hardening' option.
...
* gnu/packages/tor.scm (tor)[arguments]: Remove '--enable-expensive-hardening' option.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-31 17:06:45 +02:00
ee217402f7
gnu: erlang: Update to 20.0.
...
* gnu/packages/erlang.scm (erlang): Update to 20.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-31 17:02:36 +02:00
c27e02bf6b
gnu: network-manager: Add dependency on Newt.
...
Suggested by Mark H Weaver.
* gnu/packages/gnome.scm (network-manager)[inputs]: Add NEWT.
2017-07-31 15:23:06 +02:00
44b0faee6b
gnu: guile-git: Skip faulty tests on non-x86_64.
...
Reported by Mark H Weaver.
* gnu/packages/guile.scm (guile-git)[arguments]: Add 'skip-tests' phase
unless on x86_64-linux.
2017-07-31 15:23:06 +02:00
8ecba89b77
gnu: libgit2: Add "debug" output.
...
* gnu/packages/version-control.scm (libgit2)[outputs]: New field.
2017-07-31 15:23:06 +02:00
58dce7bfb5
gnu: libgit2: Update to 0.26.0.
...
* gnu/packages/version-control.scm (libgit2): Update to 0.26.0. Remove
"libgit2-use-after-free.patch".
* gnu/packages/patches/libgit2-use-after-free.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-31 15:23:05 +02:00
6ce8fe4cd0
gnu: efl: Add wayland support.
...
* gnu/packages/enlightenment.scm (efl)[inputs]: Add wayland-protocols.
Move mesa ...
[propagated-inputs]: ... to here. Add libinput, libxkbcommon, wayland.
[arguments]: Add flags to enable wayland, elput and drm.
2017-07-31 15:16:23 +03:00
0d3ecf77ba
gnu: gst-plugins-good: Update disable-failing-tests phase.
...
* gnu/packages/gstreamer.scm (gst-plugins-good)[arguments]: Change the
list of tests to disable during 'disable-failing-tests phase.
2017-07-31 15:16:21 +03:00
57f57a7bbf
services: ntp: Use the NTP pool via the 'guix' zone.
...
* gnu/services/networking.scm (%ntp-servers): Use *.guix.pool.ntp.org.
2017-07-30 20:21:36 -04:00
706448b193
gnu: automake: Add 1.15.1.
...
* gnu/packages/autotools.scm (automake/latest): New variable.
2017-07-30 22:31:10 +02:00
c91171627b
gnu: guix: Search .go files of dependencies in lib/guile/.
...
* gnu/packages/package-management.scm (guix)[arguments]: Add (srfi
srfi-26) to #:modules. Introduce 'gopath', distinct from 'path'.
2017-07-30 21:36:18 +02:00
1c0ee79d4d
gnu: guix: Update snapshot.
...
* gnu/packages/package-management.scm (guix): Update to 228a398
2017-07-30 17:58:04 +02:00
1398a43816
services: openssh: Extensions provide extra authorized keys.
...
* gnu/services/ssh.scm (extend-openssh-authorized-keys): New procedure.
(openssh-service-type)[compose, extend]: New fields.
* doc/guix.texi (Networking Services): Document the extension.
2017-07-30 16:23:19 +02:00
4892eb7c6a
services: openssh: Add 'authorized-keys' field.
...
* gnu/services/ssh.scm (<openssh-configuration>)[authorized-keys]: New
field.
(authorized-key-directory): New procedure.
(openssh-config-file): Honor 'authorized-keys'.
(openssh-activation): Use 'with-imported-modules'. Make /etc/ssh
755. Create /etc/ssh/authorized_keys.d.
* doc/guix.texi (Networking Services): Document it.
2017-07-30 16:23:19 +02:00
75bddb13eb
services: cuirass: Set 'GIT_SSL_CAINFO' and 'GIT_EXEC_PATH'.
...
Reported by Ricardo Wurmus.
* gnu/services/cuirass.scm (cuirass-shepherd-service): Pass
#:environment-variables.
2017-07-30 16:23:19 +02:00
c918773a03
gnu: ffmpeg: Update to 3.3.3.
...
* gnu/packages/video.scm (ffmpeg): Update to 3.3.3.
2017-07-30 12:49:38 +02:00
fa65e84aab
gnu: qemu: Build with support for Linux AIO
...
Add libaio as an input, such that QEMU is built with support for Asynchronous
I/O (AIO).
* gnu/packages/virtualization.scm (qemu)[inputs]: Uncomment libaio.
2017-07-30 09:56:00 +01:00
119fdd0d0e
services: Add memcached.
...
* gnu/services/databases.scm (memcached-service-type, %memcached-accounts):
New variables.
(<memcached-configuration>): New record type.
(memcached-service-type): New procedures.
* gnu/tests/databases.scm: New file.
* doc/guix.texi (Database Services): Document the new memcached service.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add entry for tests/databases.scm.
2017-07-30 09:08:30 +01:00
686144e986
gnu: Add memcached.
...
* gnu/packages/databases.scm (memcached): New variable.
2017-07-30 09:06:52 +01:00
c00c90ca37
gnu: retroarch: Update to 1.6.3.
...
* gnu/packages/games.scm (retroarch): Update to 1.6.3.
2017-07-30 15:15:34 +08:00
85cdab64c6
gnu: yosys: Add dependency on z3.
...
* gnu/packages/fpga.scm (yosys): Add z3 to propagated-inputs.
2017-07-29 23:03:47 +02:00
313844d9dc
gnu: Add z3.
...
* gnu/packages/maths.scm (z3): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
a4078acf4a
gnu: erlang: Fix man-pages search path of 'erl -man'.
...
* gnu/packages/patches/erlang-man-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/erlang.scm (erlang)[source]: Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
53ac6977ac
gnu: tome4: Clean up snippet.
...
* gnu/packages/games.scm (tome4)[source](snippet): Use a single
'substitute*' call instead of 'for-each'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
baa6b77789
gnu: vim: Update to 8.0.0808.
...
* gnu/packages/vim.scm (vim): Update to 8.0.0808.
[arguments]: Remove obsolete 'make-bit-reproducable' phase.
(vim-full): Update to 8.0.0808.
[arguments]: Remove 'drop-failing-tests' phase.
2017-07-29 23:01:17 +02:00
24b115dff5
gnu: emacs: Check GUIX_ENVIRONMENT when autoloading packages.
...
Check the environment profile so that we autoload packages that are given as
arguments to "guix environment" but are not in the system or user profile.
Note that the union of Emacs packages in the system, user, and environment
profiles will be autoloaded even when --pure was passed to "guix environment",
because it's not clear how to detect that --pure was given.
* gnu/packages/aux-files/emacs/guix-emacs.el (guix-emacs-autoload-packages):
Add Emacs packages from GUIX_ENVIRONMENT profile.
Signed-off-by: Alex Kost <alezost@gmail.com>
2017-07-29 23:19:17 +03:00
d0a5205292
gnu: Remove emacs-seq.
...
The seq.el library has been included with Emacs since version 25.1.
* gnu/packages/emacs.scm (emacs-seq): Remove variable.
(flycheck, emacs-cider)[propagated-inputs]: Remove emacs-seq.
Signed-off-by: Alex Kost <alezost@gmail.com>
2017-07-29 23:19:17 +03:00
469c7ce058
gnu: Remove let-alist.
...
The let-alist package has been included with Emacs since version 25.1.
* gnu/packages/emacs.scm (let-alist): Remove variable.
(flycheck, emacs-pdf-tools, emacs-sx)[propagated-inputs]: Remove let-alist.
Signed-off-by: Alex Kost <alezost@gmail.com>
2017-07-29 23:19:16 +03:00
b1a6a70684
gnu: emacs-ess: Install elisp files in "guix.d".
...
Fixes <http://bugs.gnu.org/27686 >.
Reported by Adonay Felipe Nogueira <adfeno@openmailbox.org>.
* gnu/packages/emacs.scm (emacs-ess)[arguments]: Add LISPDIR to
'make-flags' to install *.el files into "guix.d" sub-directory.
2017-07-29 23:18:56 +03:00
444f9dccc2
gnu: grub-efi: Add mtools input.
...
* gnu/packages/bootloaders.scm: Add (gnu packages mtools).
(grub-efi)[inputs]: Add mtools.
[arguments]: Add phase "use-absolute-mtools-path".
2017-07-29 19:24:04 +02:00
303690c405
gnu: Add coq-interval.
...
* gnu/packages/ocaml.scm (coq-interval): New variable.
2017-07-29 15:19:07 +02:00
b09c4244f7
gnu: Add coq-coquelicot.
...
* gnu/packages/ocaml.scm (coq-coquelicot): New variable.
2017-07-29 15:19:03 +02:00
380c65de94
gnu: Add coq-mathcomp.
...
* gnu/packages/ocaml.scm (coq-mathcomp): New variable.
2017-07-29 15:18:59 +02:00
88191acee2
gnu: Add coq-gappa.
...
* gnu/packages/ocaml.scm (coq-gappa): New variable.
2017-07-29 15:18:54 +02:00
d163d97d92
gnu: Add coq-flocq.
...
* gnu/packages/ocaml.scm (coq-flocq): New variable.
2017-07-29 15:18:45 +02:00
8f82110492
gnu: gnupg: Update to 2.1.22.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.22.
2017-07-29 14:47:24 +02:00
a9085f0c5c
gnu: metabat: Update to 2.11.2.
...
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.2.
2017-07-29 22:37:47 +10:00
0e016722ee
gnu: mes: Update to 0.9.
...
* gnu/packages/mes.scm (mes): Update to 0.9.
[arguments]: Delete `strip' phase.
[synopsis]: Rewrite to be more descriptive.
[description]: Include expanded acronym.
2017-07-29 14:33:19 +02:00
9f9b7a0d01
gnu: gptfdisk: Update to 1.0.3.
...
* gnu/packages/disk.scm (gptfdisk): Update to 1.0.3.
2017-07-29 14:15:48 +02:00
730ed6ec8b
gnu: services: admin: Add tailon.
...
* gnu/services/admin.scm
(<tailon-configuration>, <tailon-configuration-file>): New record types.
(tailon-configuration-files-string, tailon-shepherd-service): New
procedures.
(%tailon-accounts, tailon-service-type: New variables.
* doc/guix.texi (Monitoring Services: Document the Tailon service.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/tests/admin.scm.
* gnu/tests/admin.scm: New file.
2017-07-29 12:45:03 +01:00
b5244fcb49
gnu: arandr: Remove make-xrandr-available phase.
...
wrap-program functionality is already provided by python-build-system.
* gnu/packages/xdisorg.scm (arandr): Remove make-xrandr-available phase.
2017-07-29 16:47:37 +05:30
e8d9a87862
gnu: Add emacs-rpm-spec-mode.
...
* gnu/packages/emacs.scm (emacs-rpm-spec-mode): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-07-29 16:41:34 +05:30
3b56776fb8
gnu: mescc-tools: Update to 0.2.
...
* gnu/packages/mes.scm (mescc-tools): Update to 0.2.
2017-07-29 11:37:04 +02:00
38ba8a6116
gnu: linux-libre: Update to 4.12.4.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.4.
(%linux-libre-hash): Update hash.
2017-07-28 21:08:51 -04:00
dfa0c66cc9
gnu: linux-libre@4.9: Update to 4.9.40.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.40.
2017-07-28 21:08:19 -04:00
6b96478c6d
gnu: linux-libre@4.4: Update to 4.4.79.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.79.
2017-07-28 21:07:31 -04:00
4f9dd97e65
gnu: sssd: Update to 1.15.3.
...
* gnu/packages/sssd.scm (sssd): Update to 1.15.3.
[native-inputs]: Add util-linux.
2017-07-29 01:08:17 +02:00
d02e19aa2c
gnu: bind: Update to 9.11.2.
...
* gnu/packages/dns.scm (isc-bind): Update to 9.11.2.
2017-07-29 00:32:00 +02:00
32c4a5060e
gnu: emacs-auctex: Update to 11.91.0.
...
* gnu/packages/emacs.scm (emacs-auctex): Update to 11.91.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-28 23:30:41 +02:00
1f88f189eb
gnu: Add tome4.
...
* gnu/packages/games.scm (tome4): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-28 23:30:41 +02:00
1975c754f4
bootloader: Use <menu-entry> for the bootloader side.
...
* gnu/bootloader.scm (menu-entry-device-mount-point): New variable. Export it.
(<menu-entry>: New field "device".
* gnu/bootloader/grub.scm (grub-confgiuration-file): Handle <menu-entry>
entries.
* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Handle
<menu-entry> entries.
* gnu/system.scm (menu->entry->boot-parameters): Delete variable.
(boot-parameters->menu-entry): New variable. Export it.
(operating-system-bootcfg): Make OLD-ENTRIES a list of <menu-entry>.
* guix/script/system.scm (reinstall-bootloader): Fix bootcfg usage.
(perform-action): Fix bootcfg usage.
2017-07-28 21:56:18 +02:00
9ca8aa38ec
gnu: guix: Add dependency on Guile-Git.
...
* gnu/packages/package-management.scm (guix)[arguments] <wrap-program>:
Add Guile-Git to PATH.
[propagated-inputs]: Add GUILE-GIT.
(guile2.0-guix)[propagated-inputs]: Add GUILE2.0-GIT.
2017-07-28 18:09:44 +02:00
3a53759807
gnu: guile-git: Update snapshot.
...
* gnu/packages/guile.scm (guile-git): Update to commit e156a10.
[native-inputs]: Add TEXINFO.
2017-07-28 18:09:43 +02:00
6f0f55148d
gnu: le-certs: Create OpenSSL hash symlinks.
...
* gnu/packages/certs.scm (le-certs)[arguments]: Run 'c_rehash' on the
result.
[native-inputs]: New fields.
2017-07-28 18:09:43 +02:00
c4b006ba12
gnu: btrfs-progs: Update to 4.12.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.12.
[outputs]: Remove inaccurate comment on size.
2017-07-28 16:32:04 +02:00
f112bd26ae
gnu: redis: Update to 4.0.1.
...
* gnu/packages/databases.scm (redis): Update to 4.0.1.
2017-07-28 21:10:49 +10:00
ac01cb0790
gnu: ruby-json-pure: Update to 2.1.0.
...
* gnu/packages/ruby.scm (ruby-json-pure): Update to 2.1.0.
[arguments]: Replace 'replace-git-ls-files' phase with 'fix-rakefile'
and 'regenerate-gemspec' phases.
[inputs]: Remove ruby-permutation, ruby-utils, ragel. Add ruby-test-unit,
ruby-simplecov.
2017-07-28 20:18:53 +10:00
9c14bc7a4d
gnu: bundler: Update to 1.15.3.
...
* gnu/packages/ruby.scm (bundler): Update to 1.15.3.
2017-07-28 20:18:53 +10:00
a2a558147a
gnu: ruby-ffi: Update to 1.9.18.
...
* gnu/packages/ruby.scm (ruby-ffi): Update to 1.9.18.
2017-07-28 20:18:52 +10:00
00eeb45fca
gnu: redis: Update to 4.0.0.
...
* gnu/packages/databases.scm (redis): Update to 4.0.0.
2017-07-28 20:18:52 +10:00
efb94fda64
gnu: ruby-nokogiri: Update to 1.8.0.
...
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.8.0.
2017-07-28 20:18:52 +10:00
26f4a37736
gnu: ruby-mini-portile2: Update to 2.2.0.
...
* gnu/packages/ruby.scm (ruby-mini-portile2): Update to 2.2.0.
2017-07-28 20:18:51 +10:00
0f6cf5a61c
gnu: nautilus: Update to 3.24.2.1.
...
* gnu/packages/gnome.scm (nautilus): Update to 3.24.2.1.
2017-07-28 01:02:40 +02:00
73fe4552aa
gnu: gptfdisk: Update description.
...
* gnu/packages/disk.scm (gptfdisk): Remove outdated statement and use @dfn.
2017-07-28 01:02:39 +02:00
0193e3be53
gnu: goffice: Update to 3.24.2.1.
...
* gnu/packages/gnome.scm (goffice): Update to 3.24.2.1.
2017-07-28 01:02:39 +02:00
c8fc9a379b
gnu: shotwell: Update to 0.26.2.
...
* gnu/packages/gnome.scm (shotwell): Update to 0.26.2.
2017-07-28 01:02:39 +02:00
fb2715720a
gnu: whois: Update to 5.2.17.
...
* gnu/packages/networking.scm (whois): Update to 5.2.17.
2017-07-28 00:07:45 +02:00
bd51224936
gnu: nss, nss-certs: Update to 3.32.
...
This release includes minor code changes and many certificate updates:
<https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS/NSS_3.32_release_notes >
* gnu/packages/certs.scm (nss-certs): Update to 3.32.
* gnu/packages/gnuzilla.scm (nss): Update to 3.32.
[arguments]: Prevent another test file from being installed.
* gnu/packages/patches/nss-pkgconfig.patch: Adjust.
2017-07-28 00:07:28 +02:00
6571754462
gnu: nspr: Update to 4.16.
...
* gnu/packages/gnuzilla.scm (nspr): Update to 4.16.
2017-07-27 22:15:27 +02:00
90335ccea6
gnu: python-cryptography: Update to 2.0.2.
...
* gnu/packages/python.scm (python-cryptography-vectors, python-cryptography):
Update to 2.0.2.
2017-07-27 22:15:26 +02:00
b2973d9634
gnu: subversion: Update to 1.8.18.
...
* gnu/packages/version-control.scm (subversion): Update to 1.8.18.
2017-07-27 14:33:32 -04:00
6d31c175b2
gnu: net-tools: Update to 1.60-0.479bb4a7.
...
This leaves net-tools-for-tests unchanged.
Fixes <https://bugs.gnu.org/27811 >.
* gnu/packages/linux.scm (net-tools): Update to 1.60-0.479bb4a7.
[source]: Use git-fetch.
[inputs]: Remove the Debian patch.
[arguments]: Use modify-phases. Remove the 'patch' phase. Disable
SELINUX and AFBLUETOOTH from build configuration.
2017-07-27 13:39:42 -04:00
412701b0e5
services: guix-publish: Run in a UTF-8 locale.
...
Works around <https://bugs.gnu.org/26948 >.
* gnu/services/base.scm (guix-publish-shepherd-service): Pass
#:environment-variables to 'make-forkexec-constructor'.
2017-07-27 14:51:03 +02:00
138fe41198
system: Add 'grep --color' alias in '.bash_profile' skeleton.
...
* gnu/system/shadow.scm (default-skeletons)[profile]: Add 'grep' alias.
2017-07-27 14:44:28 +02:00
a812aff99c
gnu: gzochi: Update to 0.11.1.
...
* gnu/packages/game-development.scm (gzochi): Update to 0.11.1.
(gzochi)[arguments]: Remove patch for `-Werror', which is no longer
necessary.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-27 11:47:51 +02:00
f1be6f5b5a
gnu: openmpi: Add "static" output.
...
* gnu/packages/mpi.scm (openmpi)[outputs]: New field.
[arguments]: Add 'move-static-libraries' phase.
2017-07-27 11:47:50 +02:00
8f2c410fc5
gnu: r-preprocesscore: Update to 1.38.1.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.1.
2017-07-27 10:04:09 +02:00
620b0468e9
gnu: Add cowsay.
...
* gnu/packages/games.scm (cowsay): New variable.
2017-07-27 10:03:37 +02:00
56ab0f0c6d
gnu: nnn: Update to 1.3.
...
* gnu/packages/admin.scm (nnn): Update to 1.3.
2017-07-27 05:03:33 +02:00
efcacc17c7
gnu: openmpi: Enable SGE support.
...
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-sge" in
#:configure-flags.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
217ce5702c
gnu: mg: Add new phase to find 'diff'.
...
* gnu/packages/text-editors.scm (mg)[phases]: Add new 'correct-location-of-difftool'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
bcd1544dd2
gnu: mg: Fetch source via HTTPS.
...
* gnu/packages/text-editors.scm (mg)[source]: Use HTTPS.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
1a5a8afea0
gnu: mg: Update to 20170401.
...
* gnu/packages/text-editors.scm (mg): Update to 20170401.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 23:13:52 +02:00
9ea61b1c6f
gnu: Add python-flask-principal.
...
* gnu/packages/python.scm (python-flask-principal, python2-flask-principal):
New variables.
2017-07-26 21:52:30 +02:00
9d9fc39946
gnu: Add lziprecover.
...
* gnu/packages/compression.scm (lziprecover): New variable.
2017-07-26 19:38:59 +02:00
f96dbf6b70
gnu: net-tools: Add a test-only variant and use it for GnuTLS.
...
* gnu/packages/linux.scm (net-tools-for-tests): Add hidden net-tools variant.
* gnu/packages/tls.scm (gnutls)[native-inputs]: Use net-tools-for-tests instead
of net-tools.
2017-07-26 12:06:52 -04:00
bcd757fdb4
gnu: mg: Move to (gnu packages text-editors).
...
* gnu/packages/mg.scm: Remove.
* gnu/local.mk (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/text-editors.scm (mg): New variable.
2017-07-26 11:11:11 +02:00
a5130d10fa
gnu: Add fcgiwrap service.
...
* doc/guix.texi (Web Services): Add documentation.
* gnu/services/web.scm (<fcgiwrap-configuration>): New record type.
(fcgiwrap-accounts, fcgiwrap-shepherd-service): New service extensions.
(fcgiwrap-service-type): New service type.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26 11:00:04 +02:00
1cae188e61
gnu: glpk: Update to 4.63.
...
* gnu/packages/maths.scm (glpk): Update to 4.63.
2017-07-26 10:15:54 +03:00
4f038621a5
gnu: leafpad: Use glib-or-gtk build-system.
...
* gnu/packages/text-editors.scm (leafpad): Use glib-or-gtk build-system.
2017-07-26 08:19:47 +02:00
ff4192ff57
gnu: claws-mail: Disable (duplicate) Gtk+ icon cache generation.
...
* gnu/packages/mail.scm (claws-mail)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
2017-07-26 08:18:46 +02:00
8ad40a69d1
gnu: evince: Update to 3.24.1.
...
* gnu/packages/gnome.scm (evince): Update to 3.24.1.
[source]: Remove obsolete patch.
* gnu/packages/patches/evince-CVE-2017-1000083.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-25 18:41:05 -04:00
980fe414c1
gnu: hplip: Update to 3.17.7.
...
* gnu/packages/cups.scm (hplip): Update to 3.17.7.
2017-07-25 23:59:21 +02:00
ae03ee4274
gnu: fdisk: Update to 2.0.0a1.
...
* gnu/packages/disk.scm (fdisk): Update to 2.0.0a1.
[arguments]: Make sure the build finds its own headers.
2017-07-25 23:58:34 +02:00
aa588d8a38
gnu: sdparm: Update to 1.10.
...
* gnu/packages/disk.scm (sdparm): Update to 1.10.
2017-07-25 23:58:34 +02:00
af79852c99
gnu: neofetch: Fix search path.
...
* gnu/packages/admin.scm (neofetch): Fix "No such file or directory" for distro logo.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-25 23:07:37 +02:00
16fb1e79ca
gnu: chess: Update to 6.2.5.
...
* gnu/packages/games.scm (chess): Update to 6.2.5.
2017-07-25 23:07:37 +02:00
4eacb47de0
gnu: feh: Update to 2.19.1.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.19.1.
2017-07-25 22:58:43 +02:00
5f02ea1a6d
gnu: notmuch: Update to 0.25.
...
* gnu/packages/mail.scm (notmuch): Update to 0.25.
2017-07-25 22:58:43 +02:00
4fdab17371
gnu: python2-urwid: Actually build urwid for Python 2.
...
* gnu/packages/python.scm (python2-urwid)[arguments]: Add #:python.
2017-07-25 15:29:29 -04:00
e9f468dfcd
gnu: tcpdump: Update to 4.9.1 [fixes CVE-2017-11108].
...
* gnu/packages/admin.scm (tcpdump): Update to 4.9.1.
2017-07-25 15:25:44 -04:00
90062885b7
gnu: you-get: Update to 0.4.803.
...
* gnu/packages/video.scm (you-get): Update to 0.4.803.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-25 14:44:19 -04:00
c7db7b86ce
gnu: perl-dbd-mysql: Fix CVE-2017-10788.
...
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (perl-dbd-mysql)[source]: Use it.
2017-07-25 14:11:20 -04:00
bb0f6d7526
gnu: openmpi: Description mentions MPI 3.0.
...
* gnu/packages/mpi.scm (openmpi): It's MPI 3, not MPI 2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25 18:10:08 +02:00
1f9bff4152
gnu: openmpi: Update to 1.10.7.
...
* gnu/packages/mpi.scm (openmpi): Update to 1.10.7.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-25 18:09:27 +02:00
70bc608503
gnu: Add guile2.0-git.
...
* gnu/packages/guile.scm (guile2.0-git): New variable.
2017-07-25 17:46:17 +02:00
726ecfeb3a
gnu: Add guile2.0-bytestructures.
...
* gnu/packages/patches/guile-bytestructures-name-clash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-bytestructures)[source]: Use it.
[arguments]: Unpack the source.
[native-inputs]: New field.
(guile2.0-bytestructures): New variable.
2017-07-25 17:46:17 +02:00
0093b1262b
gnu: maxima: Ensure binutils are available at runtime.
...
* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
2017-07-25 07:58:55 -04:00
6b2eafaaa8
Revert "gnu: maxima: Ensure gcc is available at runtime."
...
This reverts commit f2fa86cc825ea8dbf0c9
2017-07-25 07:58:46 -04:00
5ea8dbf0c9
gnu: gcl: Ensure gcc and binutils are available at runtime.
...
* gnu/packages/lisp.scm (gcl)[arguments]: Add -fgnu89-inline to CFLAGS.
Add GCC path to make-flags. Modify 'pre-conf' phase. Add 'wrap' phase.
2017-07-25 07:58:06 -04:00
ebc9f7050c
gnu: webkitgtk: Update to 2.16.6 [security fixes].
...
Includes fixes for CVE-2017-7039, CVE-2017-7018, CVE-2017-7030, CVE-2017-7037,
CVE-2017-7034, CVE-2017-7055, CVE-2017-7056, CVE-2017-7064, CVE-2017-7061,
CVE-2017-7048, and CVE-2017-7046.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.6.
2017-07-25 07:32:25 -04:00
a84ea2191e
system: Add a default '.guile' skeleton.
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* gnu/system/shadow.scm (default-skeletons): Add ".guile".
2017-07-25 12:23:26 +02:00
5b4a6ba044
gnu: xterm: Update to 330.
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* gnu/packages/xorg.scm (xterm): Update to 330.
2017-07-24 22:54:18 -04:00
0e8fed86d8
gnu: dialog: Update to 1.3-20170509.
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* gnu/packages/ncurses.scm (dialog): Update to 1.3-20170509.
2017-07-24 22:54:15 -04:00
fce8285e4b
gnu: opus: Update to 1.2.1.
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* gnu/packages/xiph.scm (opus): Update to 1.2.1.
[source]: Use new source URL.
2017-07-24 17:37:05 -04:00
d61a894bfa
gnu: gnome: Add deja-dup.
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* gnu/packages/gnome.scm (deja-dup): New variable.
* gnu/packages/patches/deja-dup-use-ref-keyword-for-iter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch file entry.
2017-07-24 20:05:49 +01:00
c022e11187
gnu: guix: Update snapshot.
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* gnu/packages/package-management.scm (guix): Update to f1ddfe4
2017-07-24 12:25:08 +02:00
f1ddfe4f14
gnu: python-flaky: Fix Texinfo markup in description.
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* gnu/packages/python.scm (python-flaky)[description]: Escape "@".
2017-07-24 12:05:53 +02:00
2472f7a8f1
gnu: isc-dhcp: Update bundled bind to 9.9.10-P3.
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This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.9.10-P2, commit ecb232bdfc
2017-07-23 19:05:37 -04:00
5391c6c9d2
gnu: bind: Update to 9.11.1-P3.
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This fixes a regression introduced in the fix for CVE-2017-3142, in BIND
9.11.1-P2, commit faa1369e3c
2017-07-23 19:05:37 -04:00
c67d80563f
gnu: ncurses/gpm: Move to (gnu packages ncurses).
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This is needed to avoid compilation problems caused by the cyclic dependency
between (gnu packages ncurses) and (gnu packages linux).
* gnu/packages/linux.scm (ncurses/gpm): Move to ...
* gnu/packages/ncurses.scm (ncurses/gpm): ... here. Fix misleading
indentation. Add (gnu packages linux) to the module imports.
2017-07-23 17:04:51 -04:00
fd900d68a5
gnu: Add support for aarch64's compiled kernel.
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* gnu/packages/linux.scm (linux-libre)[arguments]: Add to the regex to
find and install the aarch64-linux kernel.
* gnu/system.scm (system-linux-image-file-name): Add entry for aarch64.
2017-07-23 23:33:18 +03:00
826adfdb37
gnu: Add xf86-video-freedreno.
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* gnu/packages/xorg.scm (xf86-video-freedreno): New variable.
2017-07-23 23:33:17 +03:00
4adeb3f6e6
gnu: Add u-boot-odroid-c2.
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* gnu/packages/bootloaders.scm (u-boot-odroid-c2): New variable.
2017-07-23 23:33:16 +03:00
1313628339
gnu: u-boot: Update to 2017.07.
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* gnu/packages/bootloaders.scm (u-boot): Update to 2017.07.
2017-07-23 23:33:13 +03:00
846cb73865
gnu: tevent: Update to 0.9.33.
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* gnu/packages/samba.scm (tevent): Update to 0.9.33.
2017-07-23 22:01:29 +02:00
85a5800e52
gnu: talloc: Update to 2.1.10.
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* gnu/packages/samba.scm (talloc): Update to 2.1.10.
2017-07-23 22:01:29 +02:00
fbed150133
gnu: ldb: Update to 1.1.31.
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* gnu/packages/samba.scm (ldb): Update to 1.1.31.
[native-inputs]: Add CMOCKA.
2017-07-23 22:01:28 +02:00
17c3f1fb67
gnu: cmocka: Update to 1.1.1.
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* gnu/packages/check.scm (cmocka): Update to 1.1.1.
2017-07-23 22:01:28 +02:00
38bb9df150
gnu: tdb: Update to 1.3.14.
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* gnu/packages/databases.scm (tdb): Update to 1.3.14.
2017-07-23 22:01:28 +02:00
09efef3384
gnu: python-scipy: Update to 0.19.1.
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* gnu/packages/python.scm (python-scipy): Update to 0.19.1.
[source]: Use 'pypi-uri'.
2017-07-23 22:01:28 +02:00
71d20587a5
gnu: python-matplotlib: Update to 2.0.2.
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* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2.
[source]: Use 'pypi-uri'.
2017-07-23 22:01:28 +02:00
9e5ee6b60c
gnu: python-pyparsing: Update to 2.2.0.
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* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to
2.2.0.
2017-07-23 22:01:27 +02:00
007176e710
gnu: python-pyparsing: Use 'modify-phases' syntax.
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* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use
'modify-phases'.
2017-07-23 22:01:27 +02:00
6e864d0081
gnu: Add xmobar.
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gnu/packages/wm.scm (xmobar): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-23 15:29:36 -04:00
8f155e3cff
gnu: bash-completion: Update to 2.7.
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* gnu/packages/bash.scm (bash-completion): Update to 2.7.
2017-07-23 11:05:54 +03:00
9478c05955
gnu: getmail: Update to 5.1.
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* gnu/packages/mail.scm (getmail): Update to 5.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:34:47 -04:00
f3f68a442c
gnu: metabat: Update to 2.11.1.
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* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 10:29:36 +10:00
897ab082b2
gnu: python-plastid: Update to 0.4.8.
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* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
2017-07-23 10:29:36 +10:00
0620387a59
gnu: bcftools: Update to 1.5.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag. Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-07-23 10:29:36 +10:00
63fa0ffcd4
gnu: samtools: Update to 1.5.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
2017-07-23 10:29:36 +10:00
4fb6d1280e
gnu: htslib: Update to 1.5.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
2017-07-23 10:29:35 +10:00
60739965da
gnu: python-pysam: Update to 0.11.2.2.
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* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
2017-07-23 10:29:35 +10:00
bca2c57658
gnu: bamm: Use htslib-1.3.
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* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
2017-07-23 10:29:35 +10:00
98593f9f51
gnu: bcftools: Update to 1.4.1.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch. Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-07-23 10:29:35 +10:00
4ab1644049
gnu: samtools: Update to 1.4.1.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
2017-07-23 10:29:34 +10:00
a9e4a1e641
gnu: htslib: Update to 1.4.1.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
2017-07-23 10:29:34 +10:00
c842d42593
gnu: samtools: Use "modify-phases" syntax.
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* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.
2017-07-23 10:29:34 +10:00
c62d1a6e6c
gnu: bspwm: Update to 0.9.3.
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* gnu/packages/wm.scm (bspwm): Update to 0.9.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:17:46 -04:00
7e3c977da6
gnu: Add oksh.
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* gnu/packages/shells.scm (oksh): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:15:21 -04:00
36378bd57e
gnu: quassel: Enable TLS.
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* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-07-22 20:04:53 -04:00
e745221408
gnu: youtube-dl: Update to 2017.07.23.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23.
2017-07-23 01:59:32 +02:00
4b8b245b83
gnu: mosh: Update to 1.3.2.
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* gnu/packages/ssh.scm (mosh): Update to 1.3.2.
2017-07-23 01:27:29 +02:00
a68a83f015
gnu: Add openmolar.
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* gnu/packages/medical.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Co-authored-by: Quiliro <quiliro@fsfla.org>
2017-07-22 23:48:58 +02:00
2456153adc
gnu: Add python-pyqt+qscintilla.
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* gnu/packages/qt.scm (python-pyqt+qscintilla): New variable.
2017-07-22 23:48:58 +02:00
06d04dbcfc
gnu: Add python-qscintilla.
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* gnu/packages/qt.scm (python-qscintilla): New variable.
Co-authored-by: Quiliro <quiliro@fsfla.org>
2017-07-22 23:48:57 +02:00
3befd0a97c
gnu: Add qscintilla.
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* gnu/packages/qt.scm (qscintilla): New variable.
Co-authored-by: Quiliro <quiliro@fsfla.org>
2017-07-22 23:48:57 +02:00
056468dc5f
gnu: Add cran module.
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* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
2017-07-22 23:48:57 +02:00
30f8349efb
gnu: linux-libre: Update to 4.12.3.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.3.
(%linux-libre-hash): Update hash.
2017-07-22 14:46:00 -04:00
d422eac54e
gnu: linux-libre@4.9: Update to 4.9.39.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.39.
2017-07-22 14:45:06 -04:00
f97c67a275
gnu: linux-libre@4.4: Update to 4.4.78.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.78.
2017-07-22 14:44:24 -04:00
3a4b0b126b
gnu: r-s4vectors: Update to 0.14.3.
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* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.3.
2017-07-22 17:31:19 +02:00
a35a1e9c13
gnu: r-genomicranges: Update to 1.28.4.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.4.
2017-07-22 17:22:07 +02:00
aa51da7eef
gnu: Remove python-fake-factory leftovers.
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This is a followup to c799eb2eb8
2017-07-22 15:07:45 +02:00
c799eb2eb8
gnu: Remove python-fake-factory.
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Superseded by python-faker since ce7911ddae
2017-07-22 14:31:28 +02:00
2580c2f07f
gnu: python-pyopenssl: Update to 17.2.0.
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* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0.
[native-inputs]: Add PYTHON-FLAKY.
[source](patches): Remove.
2017-07-22 14:31:28 +02:00
4e52739c61
gnu: Add python-flaky.
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* gnu/packages/python.scm (python-flaky, python2-flaky): New variables.
2017-07-22 14:31:27 +02:00
6027cb8a82
gnu: maim: Update to 5.4.64.
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* gnu/packages/xdisorg.scm (maim): Update to 5.4.64.
2017-07-22 14:31:27 +02:00
eb2b5f9d03
gnu: slop: Update to 6.3.47.
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* gnu/packages/xdisorg.scm (slop): Update to 6.3.47.
[inputs]: Add GLEW.
2017-07-22 14:31:27 +02:00
0cd95cefe0
gnu: parallel: Update to 20170722.
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* gnu/packages/parallel.scm (parallel): Update to 20170722.
2017-07-22 13:47:26 +02:00
bc35c9d318
gnu: font-gnu-unifont: Update to 10.0.05.
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* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.05.
2017-07-22 13:47:26 +02:00
f7975a3bde
gnu: nano: Update to 2.8.6.
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* gnu/packages/nano.scm (nano): Update to 2.8.6.
2017-07-22 13:47:25 +02:00
f03d8d67a5
gnu: acct: Update to 6.6.4.
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* gnu/packages/acct.scm (acct): Update to 6.6.4.
2017-07-22 13:47:25 +02:00
84fcb58050
gnu: Add conda.
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* gnu/packages/package-management.scm (conda): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2017-07-22 12:26:30 +02:00
4bc08b6e79
gnu: Add python-conda.
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* gnu/packages/package-management.scm (python-conda, python2-conda): New
variables.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-07-22 12:26:29 +02:00
Ricardo Wurmus