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37743 Commits

Author SHA1 Message Date
Leo Famulari 3a2627b83c
gnu: khal: Disable another test. 
Normally we shouldn't disable tests just because they fail.  However,
since the recent glibc update, it's not possible to keep using an old
khal, because khal requires locales to be set up properly.

* gnu/packages/calendar.scm (khal)[arguments]: Disable a failing test.
 2018-12-05 00:12:56 -05:00
Pierre Langlois 4b193da3f9
gnu: sbcl-stumpwm: Drop ECL lisp support and rename to 'stumpwm'. 
StumpWM version 1.0.0 was the last version to support lisps other than SBCL.
This patch renames the current version of Stumpwm to simply 'stumpwm' instead
of 'sbcl-stumpwm' since it's redundant, and removes the unmaintained
'ecl-stumpwm' package.

* gnu/packages/lisp.scm (sbcl-stumpwm): Deprecate in favor of 'stumpwm'.
[name]: Rename to 'stumpwm'.
[arguments]: Set '#:asd-system-name' to 'stumpwm'.
[properties]: Replace ecl-variant with cl-source-variant.
(ecl-stumpwm): Remove variable.
(cl-stumpwm): Replace 'sbcl-stumpwm' with 'stumpwm' and adapt.
(sbcl-stumpwm+slynk): Deprecate in favor of 'stumpwm+slynk'.
[name]: Rename to 'stumpwm-with-slynk'.
[inherit, inputs, arguments]: Replace 'sbcl-stumpwm' with 'stumpwm'.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2018-12-05 07:32:09 +03:00
Leo Famulari f224ea365b
gnu: go-github-com-client-golang-prometheus: Update to 0.9.1-0.7e9098b. 
* gnu/packages/syncthing.scm (go-github-com-client-golang-prometheus):
Update to 0.9.1-0.7e9098b.
[arguments]: Skip the test suite.
 2018-12-04 21:36:34 -05:00
Leo Famulari f2bf63d029
gnu: go-github-com-syncthing-notify: Update to 0.0.0-3.116c45b. 
* gnu/packages/syncthing (go-github-com-syncthing-notify): Update to 0.0.0-3.116c45b.
 2018-12-04 21:36:34 -05:00
Leo Famulari c7c0b3a98b
gnu: Syncthing: Update to 0.14.53. 
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.53.
[source]: Use bundled libraries.
[inputs]: Remove field.
[arguments]: Simplify the 'build' phase.
 2018-12-04 21:33:49 -05:00
Oleg Pykhalov 79a0eabd2a
gnu: Add python-xmltodict. 
* gnu/packages/xml.scm (python-xmltodict): New variable.
 2018-12-05 03:22:55 +03:00
Pierre Neidhardt 89ca445c29
gnu: sbcl-next: Update to 1.1.0. 
* gnu/packages/web-browsers.scm (sbcl-next): Update to 1.1.0.
 2018-12-05 00:38:58 +01:00
Pierre Neidhardt b96bd82133
gnu: next-gtk-webkit: Update to 1.1.0. 
* gnu/packages/web-browsers.scm (next-gtk-webkit): Update to 1.1.0.
 2018-12-05 00:38:44 +01:00
Christopher Baines fe5969656a
gnu: mongo-tools: Fix build. 
I guess this broke when upgrading go. I did try upgrading to the later patch
and minor releases, but they had similar problems, so lets upgrade separately.

* gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.
 2018-12-04 20:27:04 +00:00
Marius Bakke b4c684cdf3
gnu: mbedtls-apache: Update to 2.14.1 [fixes CVE-2018-19608]. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.14.1.
 2018-12-04 21:13:31 +01:00
Marius Bakke 17074cae32
gnu: samba.scm: Sort module imports. 
* gnu/packages/samba.scm (gnu): Sort imports.
 2018-12-04 21:13:31 +01:00
Marius Bakke bdf161251a
gnu: ldb: Update to 1.4.3. 
* gnu/packages/samba.scm (ldb): Update to 1.4.3.
[inputs]: Add LMDB.
 2018-12-04 21:13:31 +01:00
Marius Bakke 44eff75ea3
gnu: samba: Update to 4.9.3. 
* gnu/packages/samba.scm (samba): Update to 4.9.3.
[inputs]: Add GPGME, JANSSON, LIBARCHIVE and LMDB.
 2018-12-04 21:13:31 +01:00
Marius Bakke 69d30ba280
gnu: re2: Update to 2018-12-01. 
* gnu/packages/regex.scm (re2): Update to 2018-12-01.
 2018-12-04 21:13:31 +01:00
Marius Bakke 56302fc1ec
gnu: re2: Download sources from git. 
* gnu/packages/regex.scm (re2)[source]: Change to GIT-FETCH.
 2018-12-04 21:13:31 +01:00
Marius Bakke db2db1296b
gnu: python-django: Update to 1.11.17. 
* gnu/packages/django.scm (python-django): Update to 1.11.17.
 2018-12-04 21:13:31 +01:00
Christopher Baines 69a64ecd66
gnu: go-gopkg.in-tomb.v2: Fix build. 
Looks like this test isn't compiling with newer versions of go, so fix it to
get the package building again.

* gnu/packages/golang.scm (go-gopkg.in-tomb.v2)[arguments]: Add new
patch-source phase.
 2018-12-04 19:53:04 +00:00
Arun Isaac 30a1f6e214
gnu: Add apertium. 
* gnu/packages/dictionaries.scm (apertium): New variable.
 2018-12-04 23:08:45 +05:30
Arun Isaac d2e1d02253
gnu: Add lttoolbox. 
* gnu/packages/dictionaries.scm (lttoolbox): New variable.
 2018-12-04 23:08:45 +05:30
Arun Isaac 5790d163a4
gnu: dictionaries: Use license prefix. 
* gnu/packages/dictionaries.scm: Import (guix licenses) with license:
prefix. Fix all license fields.
 2018-12-04 23:08:33 +05:30
Ricardo Wurmus 42c3e00c20
gnu: pigx-rnaseq: Update to 0.0.5. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.5.
[inputs]: Replace snakemake-4 with snakemake.
 2018-12-04 16:21:50 +01:00
Andreas Enge 4ebfe99a3f
gnu: pari-gp: Update to 2.11.1. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.11.1.
 2018-12-04 13:38:16 +01:00
Tim Gesthuizen f5a15a86b0
gnu: emacs-irony-mode: Fetch source using git. 
* gnu/packages/emacs.scm (emacs-irony-mode)[source]: Rewrite in terms of GIT-FETCH.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-12-04 11:14:21 +01:00
Timo Eisenmann 3a1835128d
gnu: enlightenment: Use absolute path to 'edje_cc'. 
* gnu/packages/enlightenment.scm (enlightenment)[arguments]: In
'set-system-actions', set absolute file name to 'edje_cc'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-12-04 11:06:00 +01:00
Paul Garlick dd6cb4a0af
gnu: fenics: Skip extra demo in 'check' phase. 
* gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl'
demo to list of demos that require meshes supplied by git-lfs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-12-04 10:58:56 +01:00
Paul Garlick af5236739e
gnu: petsc-openmpi: Configure with support for HYPRE preconditioner. 
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi.
[arguments]: Add 'with-hypre=1' flag.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-12-04 10:58:50 +01:00
Ludovic Courtès 7bc5657f84
grafts: Mark as non substitutable. 
* guix/grafts.scm (graft-derivation/shallow): Pass #:substitutable? to
'build-expression->derivation'.
 2018-12-04 10:57:56 +01:00
Ludovic Courtès 9300e2e893
refresh: '--list-dependents' ignores deprecated packages. 
* guix/scripts/refresh.scm (all-packages): Filter out deprecated packages.
 2018-12-04 10:57:56 +01:00
Ludovic Courtès 0a5fa004f7
build: Default to https://ci.guix.info for substitutes. 
* config-daemon.ac (guix_substitute_urls): Always default to
"https://ci.guix.info".
* doc/guix.texi (SUBSTITUTE-SERVER): Switch to ci.guix.info.
* guix/scripts/build.scm (%default-log-urls): Likewise.
* guix/scripts/substitute.scm (%default-substitute-urls): Likewise.
* guix/store.scm (%default-substitute-urls): Likewise.
 2018-12-04 10:57:56 +01:00
Ludovic Courtès 0bc02becca
Remove most references to hydra.gnu.org. 
* Makefile.am (assert-binaries-available): Don't mention hydra.gnu.org
in comment.
* build-aux/check-available-binaries.scm: Likewise.
* build-aux/check-final-inputs-self-contained.scm: Likewise.
* doc/guix.texi (SUBSTITUTE-SERVER): New variable.
Use it throughout instead of "mirror.hydra.gnu.org".
* doc/contributing.texi (Submitting Patches): Likewise.
* gnu/services/base.scm (hydra-key-authorization)
(guix-activation): Remove mentions of "hydra.gnu.org" in comments and
messages.
* gnu/system/install.scm (%installation-services): Likewise.
* guix/scripts/size.scm (guix-size): Likewise.
 2018-12-04 10:57:56 +01:00
Ludovic Courtès 6a837b6062
etc: Add "ci.guix.info.pub" public key file. 
* etc/substitutes/ci.guix.info.pub: New file.
* Makefile.am (dist_pkgdata_DATA): Add it.
* guix/self.scm (miscellaneous-files): Add
"share/guix/ci.guix.info.pub".
 2018-12-04 10:57:56 +01:00
Rutger Helling 1f51f0d975
gnu: dolphin-emu: Update to commit 2c57e70. 
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 2c57e70.
 2018-12-04 10:03:55 +01:00
Oleg Pykhalov 9325533bd0
services: ddclient: Fix unrecognized keywords. 
This patch fixes warnings about unrecognized keywords in logs.

* gnu/services/dns.scm (serialize-field): Skip some field names.
 2018-12-04 07:16:00 +03:00
Leo Famulari 191c439e79
gnu: Beets: Update to 1.4.7. 
* gnu/packages/music.scm (beets): Update to 1.4.7.
 2018-12-03 18:54:53 -05:00
Leo Famulari ca45e49404
gnu: python-unidecode: Update to 1.0.23. 
* gnu/packages/python.scm (python-unidecode, python2-unidecode): Update to
1.0.23.
 2018-12-03 18:54:50 -05:00
Leo Famulari c05c1910db
gnu: Beets: Fix compatibility with Python 3.7. 
* gnu/packages/patches/beets-python-3.7-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
*  gnu/packages/music.scm (beets)[source]: Use it.
 2018-12-03 17:30:30 -05:00
Ludovic Courtès 91a4863d9d
gnu: Add hnsd. 
Thank you, Handshake!

* gnu/packages/dns.scm (hnsd): New variable.
 2018-12-03 21:57:49 +01:00
Julien Lepiller e08da7e231
nls: Update 'fr' translation. 2018-12-03 21:02:11 +01:00
Marius Bakke 4f03aa23e8
gnu: python-cryptography: Update to 2.4.2. 
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.4.2.
 2018-12-03 17:44:14 +01:00
Marius Bakke cee3d7136b
gnu: python-statsmodels: Update to 0.9.0. 
* gnu/packages/statistics.scm (python-statsmodels): Update to 0.9.0.
[arguments]: Remove obsolete workaround.
 2018-12-03 17:44:14 +01:00
Marius Bakke 650bc94216
gnu: python-scikit-learn: Update source hash. 
The upstream git tag moved from 6ccb5e44b188059e9b7459ac02ec97e32a9ab7ba to
55bf5d93e5674f13a1134d93a11fd0cd11aabcd1 two days later...

* gnu/packages/machine-learning.scm (python-scikit-learn)[source](sha256):
Update for upstream tag change.
 2018-12-03 17:44:14 +01:00
Marius Bakke 635d29c244
gnu: python-scikit-image: Propagate six and numpy. 
* gnu/packages/python.scm (python-scikit-image)[native-inputs]: Move
PYTHON-NUMPY and PYTHON-SIX ...
[propagated-inputs]: ... here.
 2018-12-03 17:44:14 +01:00
Marius Bakke fcb5409438
gnu: python-scikit-image: Update to 0.14.1. 
Also add explicit Python2 variants for its dependency closure.

* gnu/packages/python.scm (python-scikit-image): Update to 0.14.1.
[source](uri): Use PYPI-URI.
[propagated-inputs]: Add PYTHON-CLOUDPICKLE, PYTHON-DASK, PYTHON-MATPLOTLIB
and PYTHON-PYWAVELETS.
(python2-toolz, python2-cloudpickle, python2-locket, python2-blosc,
python2-partd, python2-dask): New public variables.
 2018-12-03 17:44:14 +01:00
Marius Bakke 947ee67d4b
gnu: python-dask: Update to 1.0.0. 
* gnu/packages/python.scm (python-dask): Update to 1.0.0.
[arguments]: Disable one test for Python2, and override 'check' phase.
 2018-12-03 17:44:14 +01:00
Marius Bakke 03bfbe2f10
gnu: python-cloudpickle: Update to 0.6.1. 
* gnu/packages/python.scm (python-cloudpickle): Update to 0.6.1.
 2018-12-03 17:44:14 +01:00
Marius Bakke 36c90dda38
gnu: Add python-pywavelets. 
* gnu/packages/python.scm (python-pywavelets, python2-pywavelets): New public
variables.
 2018-12-03 17:44:14 +01:00
Marius Bakke 8aaec042d4
gnu: kicad: Fix build with Boost >= 1.68. 
* gnu/packages/engineering.scm (kicad)[arguments]: Add phase 'adjust-boost-include'.
 2018-12-03 17:44:13 +01:00
Marius Bakke aefcdea199
gnu: python-greenlet: Update to 0.4.15. 
* gnu/packages/python.scm (python-greenlet): Update to 0.4.15.
 2018-12-03 17:44:13 +01:00
Marius Bakke 0e02e81936
gnu: python-geventhttpclient: Fix test failure. 
* gnu/packages/python-web.scm (python-geventhttpclient)[arguments]: Add
"--import-mode=append" to pytest invokation.
 2018-12-03 17:44:13 +01:00
Eric Bavier a8fdca11d8
doc: Remove footnotes about guile-json requirements. 
Follow-up to 6efccabe4e.

* doc/guix.texi (Invoking guix import)[pypi, gem, cpan, json]: Remove
footnotes mentioning requirement for Guile-JSON.
 2018-12-03 08:56:06 -06:00