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48190 Commits (3bc74090d9b583d0bb30a8d79e33abd3c929092f)

Author SHA1 Message Date
Ricardo Wurmus b0a5be065e
gnu: r-mzr: Update to 2.18.1. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.18.1.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus 80004ec013
gnu: r-rhtslib: Update to 1.16.2. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.2.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus 272cb5a23f
gnu: r-rsamtools: Update to 2.0.1. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.1.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus d0983f294b
gnu: r-iranges: Update to 2.18.3. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.3.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus 7d8986c858
gnu: r-dt: Update to 0.9. 
* gnu/packages/statistics.scm (r-dt): Update to 0.9.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus a416d68049
gnu: r-lambda-r: Update to 1.2.4. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.4.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus 51997203fe
gnu: r-pkgconfig: Update to 2.0.3. 
* gnu/packages/statistics.scm (r-pkgconfig): Update to 2.0.3.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus 2b953e0153
gnu: r-devtools: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.2.1.
[propagated-inputs]: Add r-rlang.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus a2b40398e9
gnu: r-microbenchmark: Update to 1.4-7. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-7.
 2019-09-28 12:24:15 +02:00
Ricardo Wurmus b2449a31b3
gnu: r-knitr: Update to 1.25. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.25.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus ebf0b43098
gnu: r-digest: Update to 0.6.21. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.21.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 76e8d079a3
gnu: r-mgcv: Update to 1.8-29. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-29.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus b1a112f41b
gnu: r-assertable: Update to 0.2.7. 
* gnu/packages/cran.scm (r-assertable): Update to 0.2.7.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 446735de7d
gnu: r-parameters: Update to 0.2.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.2.0.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 4d86ea4aea
gnu: r-uwot: Update to 0.1.4. 
* gnu/packages/cran.scm (r-uwot): Update to 0.1.4.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus cbe42da235
gnu: r-optparse: Update to 1.6.4. 
* gnu/packages/cran.scm (r-optparse): Update to 1.6.4.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 4978222ad7
gnu: r-spdep: Update to 1.1-3. 
* gnu/packages/cran.scm (r-spdep): Update to 1.1-3.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus bc9a839fea
gnu: r-sf: Update to 0.8-0. 
* gnu/packages/cran.scm (r-sf): Update to 0.8-0.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus b9d9bc6665
gnu: r-spdata: Update to 0.3.2. 
* gnu/packages/cran.scm (r-spdata): Update to 0.3.2.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 194c68263a
gnu: r-tidytree: Update to 0.2.8. 
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.8.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 7c27558ad7
gnu: r-rcpphnsw: Update to 0.2.0. 
* gnu/packages/cran.scm (r-rcpphnsw): Update to 0.2.0.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus 6b286750d9
gnu: r-rcppannoy: Update to 0.0.13. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.13.
 2019-09-28 12:24:14 +02:00
Ricardo Wurmus f889a1577c
gnu: r-bayestestr: Update to 0.3.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.3.0.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus e7c8c68532
gnu: r-raster: Update to 3.0-7. 
* gnu/packages/cran.scm (r-raster): Update to 3.0-7.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 14c3e7bb5b
gnu: r-sjmisc: Update to 2.8.2. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.2.
[propagated-inputs]: Add r-tidyselect.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus cd5d6e26db
gnu: r-shinyace: Update to 0.4.1. 
* gnu/packages/cran.scm (r-shinyace): Update to 0.4.1.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 9655b1d422
gnu: r-ttr: Update to 0.23-5. 
* gnu/packages/cran.scm (r-ttr): Update to 0.23-5.
[native-inputs]: Remove gfortran.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 290c75fc8f
gnu: r-tinytex: Update to 0.16. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.16.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus e85f05037b
gnu: r-recipes: Update to 0.1.7. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.7.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 65ddcce32c
gnu: r-curl: Update to 4.2. 
* gnu/packages/cran.scm (r-curl): Update to 4.2.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 33194de22d
gnu: r-htmltable: Update to 1.13.2. 
* gnu/packages/cran.scm (r-htmltable): Update to 1.13.2.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus 8fa788740a
gnu: r-callr: Update to 3.3.2. 
* gnu/packages/cran.scm (r-callr): Update to 3.3.2.
 2019-09-28 12:24:13 +02:00
Ricardo Wurmus f3575adfe9
gnu: r-ellipsis: Update to 0.3.0. 
* gnu/packages/cran.scm (r-ellipsis): Update to 0.3.0.
 2019-09-28 12:24:13 +02:00
Arun Isaac 667c004c6e
gnu: Add stapler. 
* gnu/packages/pdf.scm (stapler): New variable.
 2019-09-28 12:12:29 +05:30
Eric Bavier 21391f8c83
compile: Fix race condition on completion progress. 
This prevent a race condition where multiple compilation threads could report
the same progress.

* guix/build/compile.scm (compile-files)<completed>: Rename to...
<progress>: ...this.  Increment in same mutex region as the compilation is
reported.
 2019-09-27 23:00:16 -05:00
Tobias Geerinckx-Rice d49375c722
gnu: z3: Update to 4.8.6. 
* gnu/packages/maths.scm (z3): Update to 4.8.6.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice 3b1ccad0ed
gnu: xtensor: Use HTTPS home page. 
* gnu/packages/algebra.scm (xtensor)[home-page]: Use HTTPS.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice aec6c09a31
gnu: xtensor: Update to 0.20.9. 
* gnu/packages/algebra.scm (xtensor): Update to 0.20.9.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice c5b4916294
gnu: xtl: Update to 0.6.7. 
* gnu/packages/cpp.scm (xtl): Update to 0.6.7.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice 62b3a9b4c1
gnu: smu: Don't use unstable tarball. 
* gnu/packages/markup.scm (smu)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice 67e4abc531
gnu: smu: Update to 1.5. 
* gnu/packages/markup.scm (smu): Update to 1.5.
 2019-09-28 05:36:12 +02:00
Tobias Geerinckx-Rice dcedcc7c57
gnu: youtube-viewer: Update to 3.5.8. 
* gnu/packages/video.scm (youtube-viewer): Update to 3.5.8.
 2019-09-28 05:36:11 +02:00
Tobias Geerinckx-Rice f805785e2f
gnu: ubridge: Update to 0.9.16. 
* gnu/packages/networking.scm (ubridge): Update to 0.9.16.
 2019-09-28 05:36:11 +02:00
Eric Bavier ba567cae97
gnu: dealii: Update to 9.1.1. 
* gnu/packages/maths.scm (dealii): Update to 9.1.1.
[source]: Remove patch no longer needed.
* gnu/local.mk (dist_patch_DATA): ditto.
* gnu/packages/patches/dealii-mpi-deprecations.patch: Delete it.
 2019-09-27 22:23:44 -05:00
Brian Leung 3e27f472db
gnu: Add emacs-skeletor. 
* gnu/packages/emacs-xyz.scm (emacs-skeletor): New variable.
 2019-09-27 23:00:46 +02:00
Marius Bakke b48eb1e934
gnu: nginx: Update to 1.17.4. 
* gnu/packages/web.scm (nginx): Update to 1.17.4.
 2019-09-27 18:57:38 +02:00
Marius Bakke add8063742
gnu: mbedtls-apache: Update to 2.16.3. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.16.3.
 2019-09-27 18:57:37 +02:00
Marius Bakke 689b44bc3f
gnu: WebKitGTK: Update to 2.26.1. 
* gnu/packages/webkit.scm (webkitgtk-2.24): Rename to ...
(webkitgtk-2.26): ... this.  Update to 2.26.1.
[inputs]: Add BUBBLEWRAP, LIBSECCOMP, LIBWPE, WPEBACKEND-FDO, and XDG-DBUS-PROXY.
* gnu/packages/gnome.scm (eolie, epiphany)[inputs]: Adjust for changed
variable name.
* gnu/packages/web-browsers.scm (next-gtk-webkit)[inputs]: Likewise.
 2019-09-27 18:57:37 +02:00
Marius Bakke 9e0cb9d79d
gnu: Add xdg-dbus-proxy. 
* gnu/packages/glib.scm (xdg-dbus-proxy): New public variable.
 2019-09-27 18:57:37 +02:00
Marius Bakke 7970127ff0
gnu: Add wpebackend-fdo. 
* gnu/packages/webkit.scm (wpebackend-fdo): New public variable.
 2019-09-27 18:57:37 +02:00