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12995 Commits

Author SHA1 Message Date
Ben Woodcroft 3bce0f14b2
gnu: star: Update to 2.5.2a. 
* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
 2016-06-29 10:14:22 +10:00
Ben Woodcroft 6c737963f6
gnu: htslib: Update to 1.3.1. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
 2016-06-29 10:14:22 +10:00
Ricardo Wurmus ec9466388e
gnu: Add SEEK. 
* gnu/packages/bioinformatics.scm (seek): New variable.
 2016-06-28 22:49:05 +02:00
Ben Woodcroft d6e374a0d9
gnu: mafft: Update to 7.299. 
* gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
 2016-06-28 21:42:15 +10:00
Efraim Flashner 48d4ce6ea3
Revert "gnu: qtbase: Don't propagate mesa." 
This reverts commit 763a8e6e23.
 2016-06-28 14:33:37 +03:00
Ben Woodcroft 45469ebe52
gnu: metabat: Update to 0.26.3. 
* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3.
[arguments]: Update include and linking paths accordingly.
 2016-06-28 21:28:06 +10:00
Ben Woodcroft af45244e36
gnu: diamond: Update to 0.8.9. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
 2016-06-28 19:31:25 +10:00
Ricardo Wurmus 05e9f30f1e
gnu: r: Add pango to inputs. 
* gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
 2016-06-28 09:36:00 +02:00
Ludovic Courtès d2fa61bc35
tests: Add Avahi and NSS-mDNS test. 
* gnu/tests/base.scm (%avahi-os): New variable.
(run-nss-mdns-test): New procedure.
(%test-nss-mdns): New variable.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès c8695f325d
services: avahi: Add #:debug? parameter. 
* gnu/services/avahi.scm (<avahi-configuration>)[debug?]: New field.
(avahi-shepherd-service): Honor it.
(avahi-service): Add #:debug? and honor it.
* doc/guix.texi (Networking Services): Adjust accordingly.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès 194ccecf77
services: avahi: Pass --daemonize and check for the PID file. 
This makes sure the service's 'start' finishes when avahi-daemon is
ready to process requests.

* gnu/services/avahi.scm (avahi-shepherd-service): Use --daemonize
instead of --syslog and add #:pid-file.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès 037f9e07cd
tests: 'marionette-service-type' nows takes a <marionette-configuration>. 
* gnu/tests.scm (<marionette-configuration>): New record type.
(marionette-shepherd-service): Argument now is a <marionette-configuration>.
(marionette-operating-system): Adjust accordingly.  Add #:requirements
parameter and honor it.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès 858d372c98
tests: base: Add host name resolution tests. 
* gnu/tests/base.scm (run-basic-test)["host name resolution",
"host not found"]: New tests.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès 9009538d84
services: Export more service types. 
* gnu/services/base.scm (syslog-service-type): Export.
(urandom-seed-service-type): Export.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès 04101d99ee
services: nscd: Wait for the PID file. 
* gnu/services/base.scm (nscd-shepherd-service): Pass #:pid-file.
 2016-06-27 21:41:38 +02:00
Ludovic Courtès b6683f1507
doc: Fix typo for 'static-networking-service'. 
* doc/guix.texi (Networking Services): Change #:name-services to
  #:name-servers.
 2016-06-27 21:41:38 +02:00
Kei Kebreau aea7d1d516
gnu: Add orage. 
* gnu/packages/xfce.scm (orage): New variable.
 2016-06-27 12:58:06 -04:00
宋文武 06961617a1
gnu: python2-orator: Rearrange inputs. 
* gnu/packages/python.scm (python2-orator)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武 b26760302a
gnu: python-orator: Rearrange inputs. 
* gnu/packages/python.scm (python-orator)[native-inputs]: Move
python-arrow, python-blinker, python-cleo, python-fake-factory,
python-inflection, python-lazy-object-proxy, python-pyaml,
python-simplejson, python-wrapt ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武 24c9aa1810
gnu: python2-fake-factory: Rearrange inputs. 
* gnu/packages/python.scm (python2-fake-factory)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武 bbcd729791
gnu: python-fake-factory: Rearrange inputs. 
* gnu/packages/python.scm (python-fake-factory)[native-inputs]: Move
python-dateutil-2, python-six ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武 d42560bdfa
gnu: python-email-validator: Rearrange inputs. 
* gnu/packages/python.scm (python-email-validator)[native-inputs]: Move
python-dnspython, python-idna ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武 9403150a96
gnu: python-cleo: Rearrange inputs. 
* gnu/packages/python.scm (python-cleo)[native-inputs]: Move
python-psutil, python-pylev ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武 36aed73648
gnu: python-arrow: Rearrange inputs. 
* gnu/packages/python.scm (python-arrow)[native-inputs]: Move
python-dateutil-2 ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武 c8fa3d9b73
gnu: python-pykafka: Rearrange inputs. 
* gnu/packages/python.scm (python-pykafka)[native-inputs]: Move
python-gevent, python-kazoo, python-tabulate ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武 c18899e8cf
gnu: python-kazoo: Rearrange inputs. 
* gnu/packages/python.scm (python-kazoo)[native-inputs]: Move
six ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
宋文武 4591217058
gnu: python-twisted: Rearrange inputs. 
* gnu/packages/python.scm (python-twisted)[native-inputs]: Move
python-zope-interface ...
[propagated-inputs]: to here.
 2016-06-27 22:17:21 +08:00
Matthew Jordan 7a2941a83e
gnu: Add Go 1.4. 
* gnu/local.mk: Modified file.
* gnu/packages/golang.scm: New file.

Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
Co-authored-by: Andy Wingo <wingo@igalia.com>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-27 14:09:10 +02:00
Ben Woodcroft 94ff31572d
gnu: Add khmer. 
* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-06-27 21:35:16 +10:00
Ben Woodcroft 9ded145717
gnu: Add python-screed. 
* gnu/packages/bioinformatics.scm (python-screed, python2-screed):
New variables.
 2016-06-27 21:16:39 +10:00
Efraim Flashner 095b7fea44
gnu: qttools: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qttools): Update to 5.6.1-1.
 2016-06-27 05:25:32 +03:00
Efraim Flashner 677b98ae68
gnu: qtlocation: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtlocation): Update to 5.6.1-1.
 2016-06-27 05:25:30 +03:00
Efraim Flashner a2a256562f
gnu: qtwebchannel: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtwebchannel): Update to 5.6.1-1.
 2016-06-27 05:25:27 +03:00
Efraim Flashner 33741e16f4
gnu: qtserialport: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtserialport): Update to 5.6.1-1.
[inputs]: Add eudev.
 2016-06-27 05:25:10 +03:00
Efraim Flashner 66f26a35f1
gnu: qtwayland: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtwayland): Update to 5.6.1-1.
 2016-06-27 05:25:05 +03:00
Efraim Flashner 99f6f56f4f
gnu: qtmultimedia: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtmultimedia): Update to 5.6.1-1.
 2016-06-27 05:25:02 +03:00
Efraim Flashner 2743daffab
gnu: qtsensors: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtsensors): Update to 5.6.1-1.
 2016-06-27 05:25:00 +03:00
Efraim Flashner fb767debee
gnu: qtwebsockets: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtwebsockets): Update to 5.6.1-1.
 2016-06-27 05:24:58 +03:00
Efraim Flashner 4254b206b4
gnu: qtconnectivity: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtconnectivity): Update to 5.6.1-1.
 2016-06-27 05:24:56 +03:00
Efraim Flashner f3a3210cfd
gnu: qtdeclarative: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtdeclarative): Update to 5.6.1-1.
 2016-06-27 05:24:53 +03:00
Efraim Flashner d547a1970d
gnu: qtxmlpatterns: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtxmlpatterns): Update to 5.6.1-1.
 2016-06-27 05:24:51 +03:00
Efraim Flashner 0835e22816
gnu: qtx11extras: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtx11extras): Update to 5.6.1-1.
 2016-06-27 05:24:49 +03:00
Efraim Flashner 1c16029b7f
gnu: qtimageformats: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtimageformats): Update to 5.6.1-1.
 2016-06-27 05:24:46 +03:00
Efraim Flashner 7de7d8a639
gnu: qtsvg: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtsvg): Update to 5.6.1-1.
 2016-06-27 05:24:44 +03:00
Efraim Flashner c7386f4e0c
gnu: qtbase: Update to 5.6.1-1. 
* gnu/packages/qt.scm (qtbase): Update to 5.6.1-1.
 2016-06-27 05:24:42 +03:00
Efraim Flashner f66970a7ed
gnu: qtbase: Add eudev and libinput support. 
* gnu/packages/qt.scm (qtbase)[inputs]: Add eudev, libinput.
 2016-06-27 05:24:40 +03:00
Efraim Flashner 763a8e6e23
gnu: qtbase: Don't propagate mesa. 
* gnu/packages/qt.scm (qtbase)[propagated-inputs]: Move mesa ...
[inputs]: ... to here.
(qtsvg)[propagated-inputs]: No need to clear propagated-inputs.
 2016-06-27 05:24:33 +03:00
David Craven 9dd674db01
daemon: Rename 'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'. 
Partly fixes <http://bugs.gnu.org/22459>.
Reported by Jeff Mickey <j@codemac.net> and David Craven <david@craven.ch>.

* nix/libstore/globals.cc (Settings::processEnvironment()): Change
'NIX_CONF_DIR' to 'GUIX_CONFIGURATION_DIRECTORY'.
* nix/local.mk (libstore_a_CPPFLAGS): Likewise.
* guix/config.scm.in (%config-directory): Likewise.
* build-aux/test-env.in: Likewise.
* gnu/packages/patches/hydra-automake-1.15.patch: Likewise.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-06-26 23:11:07 +02:00
Ludovic Courtès 8ac6282c4b
doc: Augment mcron example. 
Suggested by Danny Milosavljevic.

* doc/guix.texi (Scheduled Job Execution): Add unprivileged job example,
and show the use of thunks as job actions and gexps.
 2016-06-26 15:29:32 +02:00
Ludovic Courtès c9a03e65b8
nls: Update 'fr' translation. 2016-06-26 15:29:32 +02:00