37a2ea118d
gnu: fortify-headers: Update to 1.0.
...
* gnu/packages/suckless.scm (fortify-headers): Update to 1.0.
2018-09-10 18:22:00 +02:00
7c8b1bf664
gnu: python-genshi: Update to 0.7.1.
...
* gnu/packages/python-web.scm (python-genshi): Update to 0.7.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME. Remove patches.
* gnu/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch,
gnu/packages/patches/python-genshi-buildable-on-python-2.7.patch,
gnu/packages/patches/python-genshi-disable-speedups-on-python-3.3.patch,
gnu/packages/patches/python-genshi-fix-tests-on-python-3.5.patch,
gnu/packages/patches/python-genshi-isstring-helper.patch,
gnu/packages/patches/python-genshi-stripping-of-unsafe-script-tags.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-09-10 18:21:59 +02:00
83397e0786
gnu: python-sockjs-tornado: Update to 1.0.5.
...
* gnu/packages/python-web.scm (python-sockjs-tornado): Update to 1.0.5.
2018-09-10 18:21:59 +02:00
1f7fe26f83
gnu: python-sockjs-tornado: Edit synopsis & description.
...
* gnu/packages/python-web.scm (python-sockjs-tornado)[synopsis]
[description]: Pick nits.
2018-09-10 18:21:59 +02:00
98d6543f86
gnu: Rename ldc.scm to dlang.scm.
...
* gnu/packages/ldc.scm: Rename to...
* gnu/packages/dlang.scm: ... this.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2018-09-10 17:47:52 +02:00
633e8aab69
gnu: ldc: Update to 1.10.0.
...
* gnu/packages/ldc.scm (ldc): Update to 1.10.0.
[native-inputs]: Switch to LLVM and CLANG.
(ldc-bootstrap)[synopsis, description]: Tweak.
* gnu/packages/patches/ldc-disable-phobos-tests.patch: New file.
* gnu/packages/patches/ldc-1.7.0-disable-phobos-tests.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-10 17:47:52 +02:00
f80d6ea251
gnu: Add hstr.
...
* gnu/packages/shellutils.scm (hstr): New variable.
2018-09-10 17:47:52 +02:00
7d05868847
substitute: Ignore exceptions thrown by 'set-thread-name'.
...
Fixes <https://bugs.gnu.org/32669 >.
Reported by Ricardo Wurmus <rekado@elephly.net>.
* guix/scripts/substitute.scm (guix-substitute): Swallow 'system-error'
exceptions around 'set-thread-name' call.
2018-09-10 17:47:52 +02:00
f8121329b1
syscalls: Report lack of a libc symbol as ENOSYS.
...
* guix/build/syscalls.scm (syscall->procedure): Throw to 'system-error
with ENOSYS when NAME cannot be found.
2018-09-10 17:47:52 +02:00
8a8662d286
gnu: emacs-guix: Update to 0.5.
...
* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.
[propagated-inputs]: Add 'guile-gcrypt'.
[arguments]: Adjust #:configure-flags accordingly.
2018-09-10 18:38:32 +03:00
fdf68c232d
gnu: emacs-build-farm: Update to 0.2.1.
...
* gnu/packages/emacs.scm (emacs-build-farm): Update to 0.2.1.
Change source from gitlab to notabug.
2018-09-10 18:38:32 +03:00
5d78cf0b6c
gnu: emacs-bui: Update to 1.2.0.
...
* gnu/packages/emacs.scm (emacs-bui): Update to 1.2.0.
Change source from github to notabug.
2018-09-10 18:38:32 +03:00
5bfa7510d1
gnu: Add python-pygenometracks.
...
* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.
2018-09-10 16:50:26 +02:00
1189c7f1b0
gnu: Add python-hicexplorer.
...
* gnu/packages/bioinformatics.scm (python-hicexplorer): New variable.
2018-09-10 16:50:26 +02:00
5bb9e0af8d
gnu: Add python-cooler.
...
* gnu/packages/bioinformatics.scm (python-cooler): New variable.
2018-09-10 16:50:26 +02:00
80f4db91b1
gnu: Add python-pyfaidx.
...
* gnu/packages/bioinformatics.scm (python-pyfaidx): New variable.
2018-09-10 16:50:26 +02:00
1f41f01c14
gnu: Add python-pypairix.
...
* gnu/packages/bioinformatics.scm (python-pypairix): New variable.
2018-09-10 16:50:26 +02:00
a9d496b353
gnu: Add python-intervaltree.
...
* gnu/packages/bioinformatics.scm (python-intervaltree): New variable.
2018-09-10 16:50:26 +02:00
a6a7156aa9
gnu: Add python-dask.
...
* gnu/packages/python.scm (python-dask): New variable.
2018-09-10 16:50:26 +02:00
035989c403
gnu: Add python-partd.
...
* gnu/packages/python.scm (python-partd): New variable.
2018-09-10 16:50:26 +02:00
c27a9d8a88
gnu: Add python-blosc.
...
* gnu/packages/python.scm (python-blosc): New variable.
2018-09-10 16:50:26 +02:00
b2b8226244
gnu: Add python-locket.
...
* gnu/packages/python.scm (python-locket): New variable.
2018-09-10 16:50:26 +02:00
930ba31d20
gnu: Add python-cloudpickle.
...
* gnu/packages/python.scm (python-cloudpickle): New variable.
2018-09-10 16:50:26 +02:00
3d352cb9cf
gnu: Add python-sortedcontainers.
...
* gnu/packages/python.scm (python-sortedcontainers): New variable.
2018-09-10 16:50:26 +02:00
098cb1e9c4
gnu: Add python-cytoolz.
...
* gnu/packages/python.scm (python-cytoolz): New variable.
2018-09-10 16:50:26 +02:00
7cd51cd28e
gnu: Add python-toolz.
...
* gnu/packages/python.scm (python-toolz): New variable.
2018-09-10 16:50:25 +02:00
943a4cb601
gnu: Add python-multiprocess.
...
* gnu/packages/python.scm (python-multiprocess): New variable.
2018-09-10 16:50:25 +02:00
fc62567251
gnu: Add python-dill.
...
* gnu/packages/python.scm (python-dill): New variable.
2018-09-10 16:50:25 +02:00
82d5c7c6de
gnu: python-typing: Update to 3.6.6.
...
* gnu/packages/python.scm (python-typing): Update to 3.6.6.
2018-09-10 15:29:13 +02:00
419aa05e1b
gnu: tinyproxy: Update to 1.10.0.
...
* gnu/packages/web.scm (tinyproxy): Update to 1.10.0.
[native-inputs]: Remove asciidoc.
2018-09-10 15:29:12 +02:00
f6c8a97a04
gnu: spectrwm: Update to 3.2.0.
...
* gnu/packages/wm.scm (spectrwm): Update to 3.2.0.
[arguments]: Remove 'fix-freetype-include' phase.
2018-09-10 15:29:12 +02:00
57d70dbabc
gnu: Add yad.
...
* gnu/packages/gtk.scm (yad): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-10 14:45:15 +02:00
94b3b6041d
gnu: hpcguix-web: Update to 53e09ea.
...
* gnu/packages/web.scm (hpcguix-web): Update to 53e09ea.
2018-09-10 12:18:14 +02:00
81317071fb
services: hpcguix-web: Produce a log file and rotate it.
...
* gnu/services/web.scm (%hpcguix-web-log-file)
(%hpcguix-web-log-rotations): New variables.
(hpcguix-web-shepherd-service): Pass #:log-file.
(hpcguix-web-service-type): Extend ROTTLOG-SERVICE-TYPE.
2018-09-10 12:12:52 +02:00
19de8273ee
services: tailon: Move to (gnu services web).
...
This allows (gnu services admin) to remain deeper in the module graph
and to be used by (gnu services web).
* gnu/services/admin.scm (<tailon-configuration-file>)
(tailon-configuration-files-string)
(tailon-configuration-file-compiler, <tailon-configuration>)
(tailon-shepherd-service, %tailon-accounts)
(tailon-service-type): Move to...
* gnu/services/web.scm: ... here.
* gnu/tests/admin.scm: Remove. Move test to...
* gnu/tests/web.scm (%tailon-os)
(run-tailon-test, %test-tailon): ... here.
2018-09-10 12:12:50 +02:00
d930374014
gnu: youtube-dl: Update to 2018.08.04.
...
* gnu/packages/video.scm (youtube-dl): Update to 2018.08.04.
2018-09-10 11:31:34 +02:00
de15ff1a6c
gnu: Add asignify.
...
* gnu/packages/crypto.scm (asignify): New variable.
2018-09-09 20:05:47 -04:00
d4bd2453ec
gnu: certbot: Update to 0.27.1.
...
* gnu/packages/tls.scm (python-acme): Update to 0.27.1.
[arguments]: Use invoke.
(certbot): Update to 0.27.1.
[native-inputs]: Use python-sphinx-1.6.
2018-09-09 18:52:04 -04:00
ced98c7e89
gnu: libgd: Fix CVE-2018-{5711,1000222}.
...
* gnu/packages/patches/gd-CVE-2018-1000222.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd/fixed): New variable.
* gnu/packages/php.scm (gd-for-php)[source]: Use 'gd-CVE-2018-1000222.patch'.
2018-09-09 18:13:19 -04:00
15cc7e6adf
ui: Add soft port for styling and filtering build output.
...
* guix/ui.scm (build-output-port): New procedure.
* guix/scripts/package.scm (%default-options): Print build trace.
(guix-package): Use build-output-port.
* guix/scripts/build.scm (guix-build): Use build-output-port.
Co-authored-by: Sahithi Yarlagadda <sahi@swecha.net>
2018-09-09 23:18:21 +02:00
80ec1b73d2
ui: Add support for colorization.
...
* guix/ui.scm (ansi-color-tables): New variable.
(color, colorize-string): New procedures.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-09-09 22:26:54 +02:00
45350539aa
gnu: r-chron: Update to 2.3-53.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-53.
2018-09-09 22:26:02 +02:00
ab50580a9d
gnu: r-annotationhub: Update to 2.12.1.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.1.
2018-09-09 22:26:02 +02:00
35c076e619
gnu: r-chippeakanno: Update to 3.14.2.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.2.
2018-09-09 22:26:02 +02:00
c36d972531
gnu: Update texmaker to 5.0.2.
...
* gnu/packages/tex.scm (texmaker): Update to 5.0.2.
2018-09-09 21:59:08 +02:00
0084744b3a
gnu: ghostscript: Update replacement to 9.24 [security fixes].
...
The following CVEs are fixed with this release: CVE-2018-15908,
CVE-2018-15909, CVE-2018-15910, CVE-2018-15911, CVE-2018-16509,
CVE-2018-16510, CVE-2018-16511, CVE-2018-16513, CVE-2018-16539,
CVE-2018-16540, CVE-2018-16541, CVE-2018-16542, CVE-2018-16543.
* gnu/packages/patches/ghostscript-CVE-2018-10194.patch: Delete file.
* gnu/packages/patches/ghostscript-CVE-2018-16509.patch,
gnu/packages/patches/ghostscript-bug-699708.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ghostscript.scm (ghostscript/fixed): Update to 9.24.
[source](patches): Remove 'ghostscript-CVE-2018-10194.patch' and
'ghostscript-runpath.patch'. Add 'ghostscript-CVE-2018-16509.patch' and
'ghostscript-bug-699708.patch'.
[arguments]: Add LDFLAGS to #:configure-flags, and a phase to create output
directory.
2018-09-09 16:43:11 +02:00
910a20e2b8
gnu: jbig2dec: Replace with 0.15 [security fixes].
...
* gnu/packages/image.scm (jbig2dec-0.15): New public variable.
(jbig2dec)[replacement]: New field.
2018-09-09 16:43:11 +02:00
a617fd55df
gnu: OpenBLAS: Update source URI.
...
* gnu/packages/maths.scm (openblas)[source](uri): Use the more stable
SourceForge mirror.
2018-09-09 16:43:11 +02:00
1448fa2547
gnu: openal: Update to 1.19.0.
...
* gnu/packages/audio.scm (openal): Update to 1.19.0.
2018-09-09 16:43:11 +02:00
e9c1492f66
gnu: glm: Update to 0.9.9.1.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.1.
2018-09-09 16:43:10 +02:00
Tobias Geerinckx-Rice