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43036 Commits

Author SHA1 Message Date
Mathieu Othacehe 442a11f68f
gnu: guile-newt: Update to 0.0.1. 
* gnu/packages/guile-xyz.scm (guile-newt): Update to 0.0.1.
 2019-04-21 09:45:36 +02:00
Ludovic Courtès 1b0b1651b1
gnu: mtools: 'mformat' initializes boot sector before writing it. 
This is the last bit fixing <https://bugs.gnu.org/35283>.

Previously, 'mformat' (used by 'grub-mkrescue') would pass uninitialized
bytes to write(2), leading to non-deterministic FAT image contents.
This patch fixes that.

* gnu/packages/patches/mtools-mformat-uninitialized.patch: New file.
* gnu/packages/mtools.scm (mtools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-04-21 00:51:19 +02:00
Ludovic Courtès 5502fbd7fd
gnu: valgrind: Add 3.15.0. 
* gnu/packages/valgrind.scm (valgrind-3.15): New variable.
 2019-04-21 00:51:19 +02:00
Ludovic Courtès 605815023c
vm: Use a fixed FAT serial number for 'efi.img' in ISO images. 
Partly fixes <https://bugs.gnu.org/35283>.

* gnu/build/vm.scm (make-iso9660-image): Set the
'GRUB_FAT_SERIAL_NUMBER' environment variable.
 2019-04-21 00:51:18 +02:00
Ludovic Courtès 52b5fe5bcf
gnu: grub: 'grub-mkrescue' honors 'GRUB_FAT_SERIAL_NUMBER'. 
* gnu/packages/patches/grub-efi-fat-serial-number.patch: New file.
* gnu/packages/bootloaders.scm (grub)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-04-21 00:51:18 +02:00
Ludovic Courtès 6901b9248e
vm: Reset file timestamps of the EFI image in ISO images. 
Partly fixes <https://bugs.gnu.org/35283>.

* gnu/build/vm.scm (make-iso9660-image): Set the 'SOURCE_DATE_EPOCH'
environment variable.
 2019-04-21 00:51:18 +02:00
Ludovic Courtès 833480cc1f
vm: Reset file timestamps in ISO images. 
Partly fixes <https://bugs.gnu.org/35283>.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.

* gnu/build/vm.scm (make-iso9660-image): Pass "-volume_date
all_file_dates =1".
 2019-04-21 00:51:18 +02:00
Ludovic Courtès 7859191210
install: Pass "modprobe.blacklist=radeon". 
* gnu/system/install.scm (installation-os)[kernel-arguments]: New field.
 2019-04-21 00:51:18 +02:00
Kei Kebreau a3e6cf9876
gnu: Add git-lfs. 
* gnu/packages/version-control.scm (git-lfs): New variable.
 2019-04-20 16:40:35 -04:00
Ricardo Wurmus afabb9ecfb
gnu: ibus-libpinyin: Add missing runtime input. 
* gnu/packages/ibus.scm (ibus-libpinyin)[inputs]: Add python-pygobject.
 2019-04-20 12:33:10 +02:00
Ricardo Wurmus 446130300e
gnu: libpinyin: Update to 2.3.0. 
* gnu/packages/ibus.scm (libpinyin): Update to 2.3.0.
 2019-04-20 12:26:12 +02:00
Ricardo Wurmus 811eae11cd
gnu: ibus-libpinyin: Update to 1.11.0. 
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.11.0.
 2019-04-20 12:26:12 +02:00
Ricardo Wurmus b2c6b467f3
gnu: ibus: Update to 1.5.20. 
* gnu/packages/ibus.scm (ibus): Update to 1.5.20.
[arguments]: Remove make-flags; remove "--disable-python2" from
configure-flags; add build phase "patch-python-target-directories".
[inputs]: Replace intltool with gnu-gettext.
 2019-04-20 12:26:08 +02:00
Leo Famulari 1e72a23d49
gnu: rct: Be more idiomatic. 
* gnu/packages/cpp.scm (rct): Move the call to 'git-version' into the
package definition.
[source]: Explicitly include the source URI rather than using
'home-page'.
 2019-04-19 15:14:54 -04:00
Mark H Weaver 18f8770d58
gnu: linux-libre: Update to 5.0.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.8.
(%linux-libre-hash): Update hash.
 2019-04-19 14:29:20 -04:00
Mark H Weaver 5547653eb8
gnu: linux-libre@4.19: Update to 4.19.35. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.35.
(%linux-libre-4.19-hash): Update hash.
 2019-04-19 14:27:42 -04:00
Mark H Weaver 3f6b7699cd
gnu: linux-libre@4.14: Update to 4.14.112. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.112.
(%linux-libre-4.14-hash): Update hash.
 2019-04-19 14:26:59 -04:00
Mark H Weaver a85190ddd0
gnu: linux-libre@4.9: Update to 4.9.169. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.169.
 2019-04-19 14:26:19 -04:00
Nicolò Balzarotti 107850b391
gnu: Add r-styler. 
* gnu/packages/cran.scm (r-styler): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-04-19 19:14:24 +02:00
Nicolas Goaziou 2613bab627
gnu: grammalecte: Update to 1.0.1. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.0.1.
[source]: Update URL.
 2019-04-19 18:37:22 +02:00
Ludovic Courtès 60ecacdeaa
gnu: linkchecker: Shorten patch file name. 
This file name was too long for 'tar', as reported by 'guix lint'.

* gnu/packages/patches/linkchecker-mark-more-tests-that-require-the-network.patch:
Rename to...
* gnu/packages/patches/linkchecker-tests-require-network.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/web.scm (linkchecker)[source]: Likewise.
 2019-04-19 17:46:40 +02:00
Ludovic Courtès 30a6cd7cd0
gnu: ocaml-dose3: Shorten patch file name. 
This file name was too long for 'tar', as reported by 'guix lint'.

* gnu/packages/patches/ocaml-dose3-Add-unix-as-dependency-to-dose3.common-in-META.in.patch:
Rename to...
* gnu/packages/patches/ocaml-dose3-add-unix-dependency.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ocaml.scm (ocaml-dose3)[source]: Adjust accordingly.
 2019-04-19 17:46:40 +02:00
Ludovic Courtès 04b5ac212f
build: Show completion percentage while building. 
* build-aux/compile-all.scm (%): New procedure.
(command-line): Use it to report completion.
 2019-04-19 17:46:40 +02:00
Ludovic Courtès 35a09fd9c1
maint: Build all the 'guix' packages in parallel. 
Until now, the 'guix' package shipped in binary tarballs and system
images would be built sequentially for each system type, one at a time.
Now all of them can potentially be built in parallel.

* Makefile.am (system_flags): New function.
(release): Run "guix build guix" before "make binary-tarballs" and
before "guix system disk-image" to build all the 'guix' packages in
parallel.
 2019-04-19 17:46:40 +02:00
Ludovic Courtès 24963c1307
maint: 'release' clears gettext-induced changes in doc/. 
* Makefile.am (release): Run "git checkout ." in doc/
 2019-04-19 17:46:40 +02:00
Ludovic Courtès ea261dea0c
guix build: Accept multiple '-s' options. 
* guix/scripts/build.scm (%default-options): Remove 'system'.
(%options) <--system>: Keep previous occurrences of 'system in RESULT.
(options->derivations)[system]: Remove.
[systems, things-to-build]: New variables.
[compute-derivation]: New procedure.
Iterate on all of SYSTEMS to compute the derivations of THINGS-TO-BUILD.
* tests/guix-build.sh: Add test for one and multiple '-s' flags.
* doc/guix.texi (Additional Build Options): Document this behavior.
 2019-04-19 17:46:40 +02:00
Ricardo Wurmus 296da6e624
gnu: r-seurat: Update to 3.0.0. 
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0.
[propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc,
r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and
r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang,
r-rsvd, r-scales, and r-sctransform.
 2019-04-19 15:38:47 +02:00
Ricardo Wurmus 9b86fea05f
gnu: Add r-sctransform. 
* gnu/packages/cran.scm (r-sctransform): New variable.
 2019-04-19 15:38:46 +02:00
Ricardo Wurmus 7015ae6881
gnu: r-urltools: Update to 1.7.3. 
* gnu/packages/cran.scm (r-urltools): Update to 1.7.3.
 2019-04-19 14:43:34 +02:00
Ricardo Wurmus f0826fec46
gnu: r-rdpack: Update to 0.11-0. 
* gnu/packages/cran.scm (r-rdpack): Update to 0.11-0.
 2019-04-19 14:43:29 +02:00
Ricardo Wurmus 5ac82ee33b
gnu: r-sdmtools: Update to 1.1-221.1. 
* gnu/packages/cran.scm (r-sdmtools): Update to 1.1-221.1.
 2019-04-19 14:43:23 +02:00
Ricardo Wurmus 3d60c80713
gnu: r-hardyweinberg: Update to 1.6.2. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.2.
 2019-04-19 14:43:17 +02:00
Ricardo Wurmus 8e79d820d0
gnu: r-clipr: Update to 0.6.0. 
* gnu/packages/cran.scm (r-clipr): Update to 0.6.0.
 2019-04-19 14:43:10 +02:00
Ricardo Wurmus 664a6bc1a6
gnu: r-caret: Update to 6.0-83. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-83.
 2019-04-19 14:42:51 +02:00
Ricardo Wurmus f00067dbfb
gnu: klick: Fix build with latest scons. 
* gnu/packages/music.scm (klick)[arguments]: Patch "SConstruct" file to make
it compatible with the current version of scons.
 2019-04-19 14:24:04 +02:00
Christopher Baines 35259437a7
gnu: perl-datetime-timezone: Fix missing timezone data. 
I noticed this when using Sqitch, on systems without /usr/share/zoneinfo,
actions like deploy fail.

* gnu/packages/perl.scm (perl-datetime-timezone)[arguments]: Add 'patch-tzdata
phase to replace /usr/share/zoneinfo with a reference to the tzdata package.
[inputs]: Add the tzdata package.
 2019-04-19 11:42:30 +01:00
Marius Bakke f32164abd3
gnu: python2-send2trash: Don't inherit properties from python-send2trash. 
This is a follow-up to commit 20b3fde776.
Commits and beer do not mix well.

* gnu/packages/python-xyz.scm (python2-send2trash): Inherit using STRIP-PYTHON2-VARIANT.
 2019-04-19 02:29:43 +02:00
Marius Bakke 20b3fde776
gnu: python-send2trash: Really delay Python2 variant. 
This is a follow-up to commit 4782a06f45, which
somehow solved my problem, but did so incorrectly.

* gnu/packages/python-xyz.scm (python-send2trash)[properties]: Refer to
PYTHON2-SEND2TRASH.
 2019-04-19 01:57:34 +02:00
Marius Bakke cbeb891344
gnu: gpgme: Update to 1.13.0. 
* gnu/packages/gnupg.scm (gpgme): Update to 1.13.0.
[source](patches): Remove.
 2019-04-19 01:48:07 +02:00
Marius Bakke 4782a06f45
gnu: python-send2trash: Properly delay python2 variant. 
* gnu/packages/python-xyz.scm (python2-send2trash)[properties]: Move from here ...
(python-send2trash)[properties]: ... to here.
 2019-04-19 01:48:07 +02:00
Marius Bakke c105e50903
gnu: python-service-identity: Update to 18.1.0. 
* gnu/packages/python-crypto.scm (python-service-identity): Update to 18.1.0.
 2019-04-19 01:48:07 +02:00
Marius Bakke 1adde06e4e
gnu: python-jsonschema: Update to 3.0.1. 
* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.0.1.
[arguments]: Adjust check phase for Twisted instead of nosetests.
[native-inputs]: Remove PYTHON-NOSE and PYTHON-VCVERSIONER.  Add
PYTHON-SETUPTOOLS-SCM and PYTHON-TWISTED.
[propagated-inputs]: Add PYTHON-ATTRS, PYTHON-PYRSISTENT and PYTHON-SIX.
(python2-jsonschema)[native-inputs, propagated-inputs]: Inherit.
 2019-04-19 01:48:07 +02:00
Marius Bakke ea43f0d581
gnu: Add python-pyrsistent. 
* gnu/packages/python-xyz.scm (python-pyrsistent, python2-pyrsistent): New
public variables.
 2019-04-19 01:48:07 +02:00
Marius Bakke 52ca1c4abf
gnu: python-twisted: Update to 19.2.0. 
* gnu/packages/python-xyz.scm (python-twisted): Update to 19.2.0.
[propagated-inputs]: Add PYTHON-PYHAMCREST.
 2019-04-19 01:48:06 +02:00
Marius Bakke 919d80a0e0
gnu: python-automat: Update to 0.7.0. 
* gnu/packages/python-xyz.scm (python-automat): Update to 0.7.0.
 2019-04-19 01:48:06 +02:00
Marius Bakke bcfb8fac36
gnu: python-m2r: Update to 0.2.1. 
* gnu/packages/python-xyz.scm (python-m2r): Update to 0.2.1.
 2019-04-19 01:48:06 +02:00
Marius Bakke e95c983706
gnu: python-idna: Update to 2.8. 
* gnu/packages/python-xyz.scm (python-idna): Update to 2.8.
 2019-04-19 01:48:06 +02:00
Marius Bakke 431a0d26c8
gnu: python-hyperlink: Update to 19.0.0. 
* gnu/packages/python-web.scm (python-hyperlink): Update to 19.0.0.
 2019-04-19 01:48:06 +02:00
Marius Bakke 8142eadd40
gnu: python-zope-interface: Update to 4.6.0. 
* gnu/packages/python-web.scm (python-zope-interface): Update to 4.6.0.
 2019-04-19 01:48:06 +02:00
Marius Bakke e6d782621a
gnu: xmlsec: Update to 1.2.28. 
* gnu/packages/xml.scm (xmlsec): Update to 1.2.28.
 2019-04-19 01:48:06 +02:00