446c7e4de3
gnu: julia: Fix make-flags on non-Intel platforms.
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* gnu/packages/julia.scm (julia)[arguments]: Add default case in 'match' form.
2015-04-22 15:08:45 -04:00
f210f057a7
gnu: python-pycairo: Fix build with with python-3.4.3.
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* gnu/packages/patches/pycairo-wscript.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (python-pycairo)[source]: Use it.
[build-system]: Use waf-build-system.
[native-inputs]: Add python-waf.
[arguments]<#:phases>: Use 'modify-phases'. Add 'patch-waf phase.
* gnu/packages/gtk.scm (python2-pycairo): Adjust accordingly.
2015-04-22 09:53:34 +08:00
feaae48499
gnu: Add python-waf.
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* gnu/packages/python.scm (python-waf, python2-waf): New variables.
2015-04-22 09:53:24 +08:00
aad8877d91
gnu: guix: Update development snapshot.
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* gnu/packages/package-management.scm (guix-devel): Update to dd3a42e
2015-04-21 21:30:23 -04:00
dd3a42e624
gnu: guix: Don't install in /etc/bash_completion.d within build environment.
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Fixes <http://bugs.gnu.org/20394 >.
Patch by Ludovic Courtès <ludo@gnu.org>.
* gnu/packages/package-management.scm (guix)[arguments]: Pass
"--with-bash-completion-dir" option to configure.
2015-04-21 19:04:34 -04:00
54b76b60d9
Revert "gnu: libidn: Update to 1.30."
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This reverts commit 8462a03f28
2015-04-21 17:47:34 -04:00
8462a03f28
gnu: libidn: Update to 1.30.
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* gnu/packages/libidn.scm (libidn): Update to 1.30.
2015-04-21 22:59:50 +02:00
8185519dba
gnu: ocrad: Update to 0.25.
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* gnu/packages/ocr.scm (ocrad): Update to 0.25.
2015-04-21 22:57:29 +02:00
6260d1a869
gnu: Add TuxGuitar.
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* gnu/packages/music.scm (tuxguitar): New variable.
2015-04-21 21:51:38 +02:00
8581c81307
gnu: Add SWT.
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* gnu/packages/java.scm (swt): New variable.
2015-04-21 21:51:38 +02:00
e4e5a4d88f
gnu: Add eXpress.
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* gnu/packages/bioinformatics.scm (express): New variable.
2015-04-21 17:57:22 +02:00
9794180d5e
gnu: Add bamtools.
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* gnu/packages/bioinformatics.scm (bamtools): New variable.
2015-04-21 17:57:22 +02:00
dbf4ed7c91
gnu: Add subread.
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* gnu/packages/bioinformatics.scm (subread): New variable.
2015-04-21 10:46:23 +02:00
44fd6ef137
ui: Add 'symlink' replacement with better error reporting.
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* guix/ui.scm (symlink): New procedure.
2015-04-20 22:37:20 +02:00
3392ce5d60
system: Make /gnu/store a read-only bind mount by default.
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* gnu/system/file-systems.scm (%immutable-store): New variable.
(%base-file-systems): Add it.
* doc/guix.texi (File Systems): Document it.
2015-04-20 22:21:51 +02:00
b86fee7848
file-systems: Use a second 'mount' call for read-only bind mounts.
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* gnu/build/file-systems.scm (MS_REMOUNT): New constant.
(mount-file-system): Add 'flags' local variable. When FLAGS has
MS_BIND & MS_RDONLY, call 'mount' with MS_REMOUNT.
* gnu/services/base.scm (file-system-service) <start>: Likewise.
2015-04-20 22:16:13 +02:00
38cf2ba084
gnu: Remove all #:select from (gnu packages ...) modules.
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This works around Guile bug <http://bugs.gnu.org/15540 >.
Reported by Andreas Enge <andreas@enge.fr>.
* gnu/packages/engineering.scm: Don't #:select from (gnu packages ...).
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/moe.scm: Likewise, and #:select from (guix licenses)
instead.
2015-04-20 15:50:59 +02:00
f73286345e
gexp: Add printers for <gexp-input> and <gexp-output>.
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* guix/gexp.scm (write-gexp-input, write-gexp-output): New procedures.
(<gexp-input>, <gexp-output>): Use them as printers.
2015-04-20 15:41:41 +02:00
c568191a93
profiles: Create a CA certificate bundle only when it would be non-empty.
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* guix/profiles.scm (ca-certificate-bundle): Create
$output/etc/ssl/certs if and only if CA-FILES is non-empty.
2015-04-20 15:41:41 +02:00
51c649992e
gnu: Add sra-tools.
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* gnu/packages/bioinformatics.scm (sra-tools): New variable.
2015-04-20 15:29:17 +02:00
75dd242480
gnu: Add NCBI VDB.
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* gnu/packages/bioinformatics.scm (ncbi-vdb): New variable.
2015-04-20 15:29:17 +02:00
2651a5e695
gnu: Add NGS Java bindings.
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* gnu/packages/bioinformatics.scm (ngs-java): New variable.
2015-04-20 15:29:16 +02:00
282c5087b4
gnu: Add NGS SDK.
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* gnu/packages/bioinformatics.scm (ngs-sdk): New variable.
2015-04-20 15:28:58 +02:00
85c37e29a4
gnu: Add Biopython.
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* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New
variables.
2015-04-20 15:23:23 +02:00
40b084a326
gnu: Adjust latest perl modules to new 'modify-phases' syntax.
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* gnu/packages/compression.scm (perl-compress-raw-zlib)[arguments]:
Add missing quotes, as needed since commit f8503e2
2015-04-19 21:39:32 -05:00
61c21ad319
gnu: Add WebKitGTK+.
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* gnu/packages/webkit.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-04-20 10:34:24 +08:00
97b05abe6d
gnu: Add JSON-Any.
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* gnu/packages/perl.scm (perl-json-any): New variable.
2015-04-19 19:48:52 -05:00
47945cf353
import: cpan: Fix license string for Artistic license.
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* guix/import/cpan.scm (string->license): Remove extraneous "_0"
suffix for Artistics licenses.
2015-04-19 19:48:52 -05:00
ae6904dc0b
gnu: nix: Propagate perl inputs.
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* gnu/packages/package-management.scm (nix)[inputs]: Move
perl-www-curl, perl-dbi, perl-dbd-sqlite to...
[propagated-inputs]: ...this new field
2015-04-19 19:48:52 -05:00
8ac84f230c
gnu: Add Sys-Hostname-Long.
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* gnu/packages/perl.scm (perl-sys-hostname-long): New variable.
2015-04-19 19:48:52 -05:00
10ef803e7d
gnu: Add Text-Table.
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* gnu/packages/perl.scm (perl-text-table): New variable.
2015-04-19 19:48:52 -05:00
7ae9557181
gnu: Add Text-Aligner.
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* gnu/packages/perl.scm (perl-text-aligner): New variable.
2015-04-19 19:48:52 -05:00
f21671f469
gnu: Add Set-Scalar.
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* gnu/packages/perl.scm (perl-set-scalar): New variable.
2015-04-19 19:48:52 -05:00
b4dcb026d6
gnu: Add SQL-SplitStatement.
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* gnu/packages/databases.scm (perl-sql-splitstatement): New variable.
2015-04-19 19:48:52 -05:00
718c89c1a1
gnu: Add SQL-Tokenizer.
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* gnu/packages/databases.scm (perl-sql-tokenizer): New variable.
2015-04-19 19:48:52 -05:00
8ce2312875
gnu: Add Perl Readonly.
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* gnu/packages/perl.scm (perl-readonly): New variable.
2015-04-19 19:48:51 -05:00
38e62c81ee
gnu: Add Perl Net-Amazon-S3.
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* gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/web.scm (perl-net-amazon-s3): New variable.
2015-04-19 19:48:51 -05:00
3dd6bee1f2
gnu: Add XML-LibXML.
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* gnu/packages/xml.scm (perl-xml-libxml): New variable.
2015-04-19 19:48:51 -05:00
18b8bbb304
gnu: Add XML-SAX;
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* gnu/packages/xml.scm (perl-xml-sax): New variable.
2015-04-19 19:48:51 -05:00
1ed6d5bc86
gnu: Add XML-SAX-Base.
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* gnu/packages/xml.scm (perl-xml-sax-base): New variable.
2015-04-19 19:48:51 -05:00
b715dbac7b
gnu: Add XML-NamespaceSupport.
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* gnu/packages/xml.scm (perl-xml-namespacesupport): New variable.
2015-04-19 19:48:51 -05:00
0955342bf7
gnu: Add Term-ProgressBar-Simple.
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* gnu/packages/perl.scm (perl-term-progressbar-simple): New variable.
2015-04-19 19:48:51 -05:00
0d54bd259c
gnu: Add Term-ProgressBar-Quiet.
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* gnu/packages/perl.scm (perl-term-progressbar-quiet): New variable.
2015-04-19 19:48:51 -05:00
4dbac597eb
gnu: Add Test-MockObject.
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* gnu/packages/perl.scm (perl-test-mockobject): New variable.
2015-04-19 19:48:51 -05:00
7332618df3
gnu: Add UNIVERSAL-isa.
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* gnu/packages/perl.scm (perl-universal-isa): New variable.
2015-04-19 19:48:51 -05:00
f9671ab689
gnu: Add UNIVERSAL-can.
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* gnu/packages/perl.scm (perl-universal-can): New variable.
2015-04-19 19:48:51 -05:00
cc307bda85
gnu: Add Term-ProgressBar.
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* gnu/packages/perl.scm (perl-term-progressbar): New variable.
2015-04-19 19:48:51 -05:00
70fe0008f7
gnu: Add TermReadKey.
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* gnu/packages/perl.scm (perl-term-readkey): New variable.
2015-04-19 19:48:51 -05:00
cd718b8201
gnu: Add Class-MethodMaker.
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* gnu/packages/perl.scm (perl-class-methodmaker): New variable.
2015-04-19 19:48:51 -05:00
56da2a1abd
gnu: Add IO-Interactive.
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* gnu/packages/perl.scm (perl-io-interactive): New variable.
2015-04-19 19:48:51 -05:00
Mark H Weaver