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Author SHA1 Message Date
ng0 133cb8766c
gnu: Add libmatemixer. 
* gnu/packages/mate.scm (libmatemixer): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-12 09:55:25 +03:00
ng0 c3812bec8e
gnu: Add mate-panel. 
* gnu/packages/mate.scm (mate-panel): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-12 09:55:23 +03:00
ng0 a8376ca5bf
gnu: Add mate-session-manager. 
* gnu/packages/mate.scm (mate-session-manager): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-12 09:55:21 +03:00
ng0 4d26a340b5
gnu: Add marco. 
* gnu/packages/mate.scm (marco): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-12 09:55:20 +03:00
ng0 17df429ce6
gnu: Add mate-terminal. 
* gnu/packages/mate.scm (mate-terminal): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-12 09:55:18 +03:00
ng0 42a6eaaceb
gnu: Add caja. 
* gnu/packages/mate.scm (caja): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-12 09:55:10 +03:00
Efraim Flashner fa7647c631
gnu: monero: Fix building on aarch64-linux. 
* gnu/packages/finance.scm (monero)[arguments]: Add a configure-flag to
set architecture type on aarch64.
 2017-09-12 09:55:07 +03:00
Jan Nieuwenhuizen f435379762
gnu: mes: Update to 0.10. 
* gnu/packages/mes.scm (mes): Update to 0.10.
 2017-09-11 18:03:42 -04:00
Leo Famulari 007b92cfc0
gnu: mpg123: Update to 1.25.6 [fixes CVE-2017-12797]. 
* gnu/packages/mp3.scm (mpg123): Update to 1.25.6.
 2017-09-11 13:23:26 -04:00
Tobias Geerinckx-Rice 5564b2c53e
gnu: libchamplain: Update to 0.12.16. 
* gnu/packages/gnome.scm (libchamplain): Update to 0.12.16.
 2017-09-11 15:01:20 +02:00
Tobias Geerinckx-Rice 45586b8dd8
gnu: gnome-online-accounts: Update to 3.24.3. 
* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.24.3.
 2017-09-11 15:01:20 +02:00
Ludovic Courtès 66ae958c5b
gnu: emacs: Patch message-mode enriched text translation [security fix]. 
* gnu/packages/patches/emacs-unsafe-enriched-mode-translations.patch:
New file.
* gnu/packages/emacs.scm (emacs)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-09-11 14:52:29 +02:00
Jan Nieuwenhuizen 238ee64802
gnu: nyacc: Update to 0.82.0. 
* gnu/packages/mes.scm (nyacc): Update to 0.82.0.
 2017-09-11 14:44:05 +02:00
Ben Woodcroft d8661f52b1
gnu: ruby-activesupport: Update to 5.1.4. 
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.1.4.
 2017-09-11 21:43:20 +10:00
宋文武 6bda496286
gnu: icedtea-8: Install the nss.cfg file to JRE. 
Before this, accessing HTTPS will throw an exception about 'nss.cfg' could not
be found.

* gnu/packages/java.scm (icedtea-8)[arguments]: Copy 'nss.cfg' from JDK into
JRE in the install phase.
 2017-09-11 19:07:56 +08:00
Ludovic Courtès 130c3bc894
gnu: gdb: Update to 8.0.1. 
* gnu/packages/gdb.scm (gdb): Update to 8.0.1.
 2017-09-11 11:57:51 +02:00
Ludovic Courtès 21c2757f27
gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix): Update to a9468b4.
 2017-09-11 11:36:38 +02:00
Theodoros Foradis 79228a52d2
gnu: Add monero-core. 
* gnu/packages/finance.scm (monero-core): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-11 11:10:21 +02:00
Theodoros Foradis 8514662b20
gnu: Add monero. 
* gnu/packages/finance.scm (monero): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-11 11:10:20 +02:00
Efraim Flashner e5f3d1183c
gnu: libffcall: Update to 2.0. 
* gnu/packages/libffcall.scm (libffcall): Update to 2.0.
 2017-09-11 11:16:11 +03:00
Mark H Weaver 4b4869ce97
gnu: linux-libre: Update to 4.13.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.1.
(%linux-libre-hash): Update hash.
 2017-09-11 00:42:09 -04:00
Mark H Weaver 3abc12d6d2
gnu: linux-libre@4.9: Update to 4.9.49. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.49.
 2017-09-11 00:41:24 -04:00
Jelle Licht cfd34f4316
gnu: python-apsw: Build with all extensions. 
* gnu/packages/python.scm (python-apsw)[phases]: Replace build phase; add flag
  to build all extensions. Add build-test-helper to allow testing of
  extensions.
 2017-09-11 01:12:59 +02:00
Tobias Geerinckx-Rice c1b815a5b8
gnu: gnome-sudoku: Update to 3.26.0. 
* gnu/packages/gnome.scm (gnome-sudoku): Update to 3.26.0.
 2017-09-11 00:54:03 +02:00
Tobias Geerinckx-Rice 55a9f04052
gnu: gnome-klotski: Update to 3.22.2. 
* gnu/packages/gnome.scm (gnome-klotski): Update to 3.22.2.
 2017-09-11 00:54:02 +02:00
Tobias Geerinckx-Rice da40501ba5
gnu: libgnome-games-support: Update to 1.2.3. 
* gnu/packages/gnome.scm (libgnome-games-support): Update to 1.2.3.
 2017-09-11 00:54:01 +02:00
Tobias Geerinckx-Rice e0f4966448
gnu: cloc: Fix typo in description. 
* gnu/packages/code.scm (cloc)[description]: Fix typo.
 2017-09-11 00:54:01 +02:00
Tobias Geerinckx-Rice 7ca001c33d
gnu: cloc: Update to 1.74. 
* gnu/packages/code.scm (cloc): Update to 1.74.
[source]: Update source URL.
 2017-09-11 00:54:00 +02:00
Tobias Geerinckx-Rice 4e4de30a4b
gnu: youtube-dl: Update to 2017.09.10. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.09.10.
 2017-09-11 00:54:00 +02:00
Kei Kebreau 4561498e1f
gnu: Fix build failures caused by commit 
d10092b849.

* gnu/packages/bioinformatics.scm (seek)[arguments]: Restore previous phase
order.
* gnu/packages/ci.scm (cuirass)[arguments]: Add patch-/bin/sh phase.
 2017-09-10 18:21:35 -04:00
Jan Nieuwenhuizen 4aafce22ab
gnu: Add emacs-bash-completion. 
* gnu/packages/emacs.scm (emacs-bash-completion): New variable.
 2017-09-10 22:43:05 +02:00
Efraim Flashner 338b58e0ea
gnu: openjpeg: Fix CVE-2017-14164. 
* gnu/packages/image.scm (openjpeg)[source]: Add patch.
* gnu/packages/patches/openjpeg-CVE-2017-14164.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-09-10 22:00:35 +03:00
Efraim Flashner 224bb4b6f9
gnu: graphicsmagick: Fix CVE-2017-14165. 
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch.
* gnu/packages/patches/graphicsmagick-CVE-2017-14165.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-09-10 21:45:45 +03:00
Christopher Baines 814da59fcc
gnu: Add emacs-wgrep. 
* gnu/packages/emacs.scm (emacs-wgrep): New variable.
 2017-09-10 19:27:00 +01:00
Christopher Baines 81808194ac
gnu: Add emacs-rspec. 
* gnu/packages/emacs.scm (emacs-rspec): New variable.
 2017-09-10 19:26:51 +01:00
Kei Kebreau 2cc752c0b0
gnu: graphicsmagick: Fix CVE-2017-14042. 
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patch.
* gnu/packages/patches/graphicsmagick-CVE-2017-14042.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-09-10 09:33:56 -04:00
Tobias Geerinckx-Rice bc64676c46
gnu: btrfs-progs: Update to 4.13. 
* gnu/packages/linux.scm (btrfs-progs): Update 4.13.
[native-inputs]: Add acl.
 2017-09-10 12:50:32 +02:00
Ludovic Courtès 67a37c6311
gnu: foomatic-filters: Add missing patches. 
This is a followup to commit d02aabaf1b.

* gnu/packages/patches/foomatic-filters-CVE-2015-8327.patch: New file.
* gnu/packages/patches/foomatic-filters-CVE-2015-8560.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
 2017-09-10 12:00:25 +02:00
Ludovic Courtès 5db0a1cd5a
gnu: Add foo2zjs. 
* gnu/packages/cups.scm (foo2zjs): New variable.
 2017-09-09 23:01:52 +02:00
Ludovic Courtès d02aabaf1b
gnu: Add foomatic-filters. 
* gnu/packages/cups.scm (foomatic-filters): New procedure.
 2017-09-09 23:01:52 +02:00
Leo Famulari 45bed1d3ea
gnu: python2-acme: Remove package. 
This package has not built successfully for a long time. Since it
appears to have no users, we remove it for now.

* gnu/packages/tls.scm (python2-acme): Remove variable.
 2017-09-08 19:55:34 -04:00
Leo Famulari 73a2ef3697
gnu: tcpdump: Remove alternate source URL. 
* gnu/packages/admin.scm (tcpdump)[source]: Remove alternate URL.
 2017-09-08 19:36:04 -04:00
Leo Famulari 72fe8956f5
gnu: certbot, python-acme: Update to 0.18.1. 
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.18.1.
 2017-09-08 19:26:55 -04:00
Oleg Pykhalov 1eb6b72483
gnu: Add python-betamax-matchers. 
* gnu/packages/python.scm (python-betamax-matchers, python2-betamax-matchers):
  New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-08 18:12:51 +02:00
Oleg Pykhalov 4967946b8a
gnu: Add python-uritemplate. 
* gnu/packages/python.scm (python-uritemplate, python2-uritemplate): New
  variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-08 18:08:58 +02:00
Troy Sankey a5d6b0a3d2
gnu: notmuch-addrlookup-c: Update to 8-1.88f156d. 
* gnu/packages/mail.scm (notmuch-addrlookup-c): Update to 8-1.88f156d.
[source]: Use git-fetch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-08 18:08:31 +02:00
ng0 a79830d035
gnu: neomutt: Update to 20170907. 
* gnu/packages/mail.scm (neomutt): Update to 20170907.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-08 17:43:37 +02:00
Ludovic Courtès 8bfa40eae5
gnu: hwloc: Update to 1.11.8. 
* gnu/packages/mpi.scm (hwloc): Update to 1.11.8.
 2017-09-08 12:48:08 +02:00
Mark H Weaver b3a63e697d
gnu: linux-libre@4.9: Update to 4.9.48. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.48.
 2017-09-08 03:46:16 -04:00
Mark H Weaver 5c6f434d74
gnu: linux-libre@4.4: Update to 4.4.87. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.87.
 2017-09-08 03:45:30 -04:00
Ludovic Courtès cd1ad27e6c
gnu: elogind: Use itself as the cgroup controller. 
Fixes a regression introduced in
fa67d56541 whereby elogind would fail to
start with:

  Cannot determine cgroup we are running in: No data available
  Out of memory.

thereby preventing log-in altogether.

* gnu/packages/freedesktop.scm (elogind)[arguments]: Pass
"--with-cgroup-controller=elogind".
* gnu/tests/desktop.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2017-09-08 00:11:21 +02:00
Ludovic Courtès 505760ed08
gnu: elogind: Remove unnecessary configure flag. 
* gnu/packages/freedesktop.scm (elogind)[arguments]: Remove
"--with-libcap" configure flag, which is no longer needed.
 2017-09-08 00:11:21 +02:00
Leo Famulari 81635ad03e
gnu: tcpdump: Update to 4.9.2 [security fixes]. 
Fixes CVE-2017-{12893,12894,12895,12896,12897,12898,12899,12900,12901,12902,
12985,12986,12987,12988,12989,12990,12991,12992,12993,12994,12995,12996,12997,
12998,12999,13000,13001,13002,13003,13004,13005,13006,13007,13008,13009,13010,
13012,13013,13014,13015,13016,13017,13018,13019,13020,13021,13022,13023,13024,
13025,13026,13027,13028,13029,13030,13031,13032,13033,13034,13035,13036,13037,
13038,13039,13040,13041,13042,13043,13044,13045,13046,13047,13048,13049,13050,
13051,13052,13053,13054,13055,13687,13688,13689,13690,13725}.

* gnu/packages/admin.scm (tcpdump): Update to 4.9.2.
[source]: Remove patches and add alternate source URL.
* gnu/packages/patches/tcpdump-CVE-2017-11541.patch,
gnu/packages/patches/tcpdump-CVE-2017-11542.patch,
gnu/packages/patches/tcpdump-CVE-2017-11543.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2017-09-07 17:44:20 -04:00
Leo Famulari 3b2802f8c4
gnu: certbot, python-acme: Update to 0.18.0. 
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.18.0.
 2017-09-07 15:47:01 -04:00
Leo Famulari 6a7bd25bf2
gnu: qemu: Fix CVE-2017-{13711,14167}. 
* gnu/packages/patches/qemu-CVE-2017-14167.patch
gnu/packages/patches/qemu-CVE-2017-13711.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
 2017-09-07 15:46:57 -04:00
Leo Famulari 94d671f673
gnu: libarchive: Replace with libarchive 3.3.2 and fix CVE-2017-14166. 
* gnu/packages/backup.scm (libarchive)[replacement]: New field.
(libarchive-3.3.2): New variable.
* gnu/packages/patches/libarchive-CVE-2017-14166.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-09-07 14:29:38 -04:00
Ludovic Courtès 5a7deb1174
gnu: Add BLIS. 
* gnu/packages/maths.scm (make-blis): New procedure.
(blis, ignorance): New variables.
(blis/x86_64): New macro.
(blis-sandybridge, blis-haswell, blis-knl): New variables.
 2017-09-07 15:38:56 +02:00
Ludovic Courtès c2ffcc4425
gnu: elogind: Add '-L' flag for libcap in libelogind.la. 
This fix allows us to revert this series of commits:

  1b97e9261 * gnu: gdm: Add missing input.
  de0c89f18 * gnu: colord: Add missing input.
  7e38ba654 * gnu: accountsservice: Add missing input.
  166bc1b25 * gnu: network-manager: Add missing input.
  daae20894 * gnu: modem-manager: Add missing input.
  1f919459e * gnu: udisks: Add missing input.
  744e9d074 * gnu: mutter: Add missing input.
  0cce140dc * gnu: gnome-session: Add missing input.
  77c2476ae * gnu: polkit: Add missing input.
  124ac301c * gnu: weston: Add missing input.
  472c2223c * gnu: kmscon: Add missing input.

* gnu/packages/freedesktop.scm (elogind)[arguments]: Add
'add-libcap-to-search-path' phase.
(weston)[inputs]: Remove LIBCAP.
(udisks): Likewise.
(accountsservice): Likewise.
(modem-manager): Likewise.
* gnu/packages/gnome.scm (colord): Likewise
(gnome-session): Likewise.
(mutter): Likewise.
(network-manager): Likewise.
(gdm): Likewise.
* gnu/packages/polkit.scm (polkit): Likewise.
* gnu/packages/terminals.scm (kmscon): Likewise.
 2017-09-07 13:57:42 +02:00
Peter Mikkelsen 26ba09ba35
gnu: elogind: Update to 232.4. 
* gnu/packages/freedesktop.scm (elogind): Update to 232.4.
[arguments]: Add --with-rootlibexecdir.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-07 13:57:39 +02:00
Roel Janssen eaff063aa0
gnu: emacs-ess: Relocate the etc directory so that ESS can find it. 
* gnu/packages/emacs.scm (emacs-ess): Relocate the etc directory so
  that ESS can find it.
 2017-09-07 09:59:32 +02:00
Cyril Roelandt c98f9c5296
gnu: python-tox: Update to 2.8.0. 
* gnu/packages/python.scm (python-tox): Update to 2.8.0.
 2017-09-06 23:54:22 +02:00
Efraim Flashner 18e565bf67
gnu: terminology: Update to 1.1.1. 
* gnu/packages/enlightenment.scm (terminology): Update to 1.1.1.
 2017-09-06 22:07:37 +03:00
Peter Mikkelsen 1b97e92613
gnu: gdm: Add missing input. 
* gnu/packages/gnome.scm (gdm)[inputs]: Add libcap.
 2017-09-06 19:05:56 +03:00
Peter Mikkelsen de0c89f181
gnu: colord: Add missing input. 
* gnu/packages/gnome.scm (colord)[inputs]: Add libcap.
 2017-09-06 19:05:56 +03:00
Peter Mikkelsen 7e38ba654a
gnu: accountsservice: Add missing input. 
* gnu/packages/freedesktop.scm (accountsservice)[inputs]: Add libcap.
 2017-09-06 19:05:55 +03:00
Peter Mikkelsen 166bc1b259
gnu: network-manager: Add missing input. 
* gnu/packages/gnome.scm (network-manager)[inputs]: Add libcap.
 2017-09-06 19:05:55 +03:00
Peter Mikkelsen daae208942
gnu: modem-manager: Add missing input. 
* gnu/packages/freedesktop.scm (modem-manager)[inputs]: Add libcap.
 2017-09-06 19:05:55 +03:00
Peter Mikkelsen 1f919459eb
gnu: udisks: Add missing input. 
* gnu/packages/freedesktop.scm (udisks)[inputs]: Add libcap.
 2017-09-06 19:05:55 +03:00
Tobias Geerinckx-Rice 4ef6cfefaa
gnu: python-pyxb: Update to 1.2.6. 
* gnu/packages/xml.scm (python-pyxb): Update to 1.2.6.
 2017-09-06 17:12:42 +02:00
Tobias Geerinckx-Rice 35a4fefc01
gnu: iproute: Edit description. 
* gnu/packages/linux.scm (iproute)[description]: Re-order, be concise, and
omit information that is obsolete, misleading, or irrelevant to Guix users.
 2017-09-06 17:12:41 +02:00
Tobias Geerinckx-Rice ddcac5595e
gnu: iproute: Update to 4.13.0. 
* gnu/packages/linux.scm (iproute): Update to 4.13.0.
 2017-09-06 17:12:40 +02:00
Nicolas Goaziou e9ba22d6e1
gnu: emacs-org: Update to 20170906. 
* gnu/packages/emacs.scm (emacs-org): Update to 20170906, a.k.a. Org 9.1.
 2017-09-06 14:45:08 +02:00
Efraim Flashner 98df3a88b5
gnu: libzip: Update to 1.3.0 (fixes CVE-2017-14107). 
* gnu/packages/compression.scm (libzip): Update to 1.3.0.
[source]: Remove patch.
[arguments]: Remove custom 'patch-perl phase.
* gnu/packages/patches/libzip-CVE-2017-12858.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-09-06 14:20:43 +03:00
Efraim Flashner 3b7c606965
gnu: openjpeg: Fix CVE-2017-14151, CVE-2017-14152. 
* gnu/packages/image.scm (openjpeg)[source]: Add patches.
* gnu/packages/patches/openjpeg-CVE-2017-14151.patch,
gnu/packages/patches/openjpeg-CVE-2017-14152.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-09-06 14:20:40 +03:00
Nicolas Goaziou f049e79dc3
gnu: csound: Update to 6.09.1. 
* gnu/packages/audio.scm (csound): Update to 6.09.1.  Change source URI.
* gnu/packages/patches/csound-header-ordering.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove reference to patch above.
 2017-09-06 12:51:59 +02:00
Roel Janssen 026ebc141f
gnu: Update calibre to 3.6.0. 
* gnu/local.mk: Remove calibre-drop-unrar.patch
* gnu/packages/ebook.scm (calibre): Update to 3.6.0.
  Add python-html5-parser input.
* gnu/packages/patches/calibre-drop-unrar.patch: Remove file.
 2017-09-06 12:42:57 +02:00
Roel Janssen 13be557d98
gnu: Add python-html5-parser, python2-html5-parser. 
* gnu/packages/python.scm (python-html5-parser): New variable.
  (python2-html5-parser: New variable.
 2017-09-06 12:42:40 +02:00
Roel Janssen 2054b52201
gnu: Update python-lxml to 3.8.0. 
* gnu/packages/python.scm (python-lxml): Update to 3.8.0.
 2017-09-06 12:41:41 +02:00
Christopher Baines 21a656f590
gnu: Add emacs-go-mode. 
* gnu/packages/emacs.scm (emacs-go-mode): New variable.
 2017-09-06 08:51:38 +01:00
Efraim Flashner 744e9d0745
gnu: mutter: Add missing input. 
* gnu/packages/gnome.scm (mutter)[inputs]: Add libcap.
 2017-09-06 10:49:59 +03:00
Efraim Flashner 50918af29b
gnu: mutter: Only propagate glib once. 
* gnu/packages/gnome.scm (mutter)[propagated-inputs]: Remove duplicate
glib.
 2017-09-06 10:49:55 +03:00
Efraim Flashner 0cce140dc2
gnu: gnome-session: Add missing input. 
* gnu/packages/gnome.scm (gnome-settings)[inputs]: Add libcap.
 2017-09-06 10:49:51 +03:00
Efraim Flashner 77c2476ae3
gnu: polkit: Add missing input. 
* gnu/packages/polkit.scm (polkit)[inputs]: Add libcap.
 2017-09-06 10:49:47 +03:00
Efraim Flashner 124ac301c1
gnu: weston: Add missing input. 
* gnu/packages/freedesktop.scm (weston)[inputs]: Add libcap.
 2017-09-06 10:49:44 +03:00
Efraim Flashner 472c2223c0
gnu: kmscon: Add missing input. 
* gnu/packages/terminals.scm (kmscon)[inputs]: Add libcap.
 2017-09-06 10:49:31 +03:00
Efraim Flashner f1597427f2
gnu: file: Fix CVE-2017-1000249. 
* gnu/packages/file.scm (file)[replacement]: New field.
(file/fixed): New variable.
* gnu/packages/commencement.scm (file-boot0): Use package/inherit.
* gnu/packages/patches/file-CVE-2017-1000249.patch.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-09-05 23:04:05 +03:00
Tobias Geerinckx-Rice 5cf0997a0b
gnu: ruby-coderay: Update to 1.1.2. 
* gnu/packages/ruby.scm (ruby-coderay): Update to 1.1.2.
 2017-09-05 20:57:14 +02:00
Tobias Geerinckx-Rice 26ac5c90c1
gnu: nginx: Enable HTTP/2.0 (ngx_http_v2_module). 
* gnu/packages/web.scm (nginx)[arguments]: Add ‘--with-http_v2_module’ flag.
 2017-09-05 20:57:14 +02:00
Leo Famulari 514c2f4806
gnu: tcpdump: Fix CVE-2017-[11541,11542,11543]. 
* gnu/packages/patches/tcpdump-CVE-2017-11541.patch,
gnu/packages/patches/tcpdump-CVE-2017-11542.patch
gnu/packages/patches/tcpdump-CVE-2017-11543.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/admin.scm (tcpdump)[source]: Use them.
 2017-09-05 14:53:50 -04:00
Efraim Flashner 0cae36b5e5
gnu: libmediainfo: Adjust build phases. 
* gnu/packages/video.scm (libmediainfo)[arguments]: Change to the build
directory before running autogen.
 2017-09-05 21:51:03 +03:00
Ricardo Wurmus fa67d56541
gnu: elogind: Update to 232.3. 
* gnu/packages/freedesktop.scm (elogind): Update to 232.3.
[home-page]: Use new upstream home page.
[arguments]: Disable tests, add new required configure flags; add build phase
"autogen".
[native-inputs]: Add autoconf, automake, libtool, and python.
 2017-09-05 16:59:46 +02:00
Ricardo Wurmus 8036caa75a
gnu: r-tidyr: Update to 0.7.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.1.
 2017-09-05 16:59:46 +02:00
Ricardo Wurmus 31b7f0c0fc
gnu: r-gdtools: Update to 0.1.6. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.6.
 2017-09-05 16:59:45 +02:00
Roel Janssen 325c039c1d
gnu: Add r-sparql. 
* gnu/packages/bioinformatics.scm (r-sparql): New variable.
 2017-09-05 11:02:03 +02:00
Tobias Geerinckx-Rice c0ac72e18c
gnu: epiphany: Update to 3.24.4. 
* gnu/packages/gnome.scm (epiphany): Update to 3.24.4.
 2017-09-05 05:44:27 +02:00
Tobias Geerinckx-Rice b8fb94d5b8
gnu: libvirt: Make selected inputs native-inputs. 
* gnu/packages/virtualization.scm (libvirt)[inputs]: Move perl, polkit, and
python from here...
[native-inputs]: ...to here.
 2017-09-05 05:27:41 +02:00
Tobias Geerinckx-Rice 2f110b32a4
gnu: libvirt: Update to 3.7.0. 
* gnu/packages/virtualization.scm (libvirt): Update to 3.7.0.
[native-inputs]: Add libxslt for xsltproc.
 2017-09-05 05:27:40 +02:00
Tobias Geerinckx-Rice 864f2f0ef0
gnu: python-libvirt: Update to 3.7.0. 
* gnu/packages/virtualization.scm (python-libvirt): Update to 3.7.0.
 2017-09-05 05:27:40 +02:00
Tobias Geerinckx-Rice b3fee5c141
gnu: Use HTTPS for libvirt.org. 
* gnu/packages/virtualization.scm (libvirt, python-libvirt)[home-page]:
Use HTTPS.
 2017-09-05 05:27:39 +02:00
Mark H Weaver b8b0f536a4
gnu: libidn2: Replace with 2.0.4 [security fixes]. 
* gnu/packages/libidn.scm (libidn2)[replacement]: New field.
(libidn2-2.0.4): New variable.
 2017-09-04 20:39:20 -04:00
Ludovic Courtès a913d9d926
gnu: emacs-tiny: Fix typo. 
* gnu/packages/emacs.scm (emacs-tiny)[description]: Fix typo.
 2017-09-04 23:52:44 +02:00
Christopher Baines 26361de404
gnu: Add emacs-minitest. 
* gnu/packages/emacs.scm (emacs-minitest): New variable.
 2017-09-04 22:31:37 +01:00
Marius Bakke c427fda233
gnu: classpath-devel: Fix build after d10092b849. 
* gnu/packages/java.scm (classpath-devel)[arguments]: Actually run 'bootstrap'
phase.
 2017-09-04 22:08:55 +02:00
Alex Kost 8505d34829
gnu: emacs-browse-at-remote: Simplify 'check' phase. 
* gnu/packages/emacs.scm (emacs-browse-at-remote)[native-inputs]: Add
'ert-runner'.
[arguments]: Run it in the 'check' phase.
 2017-09-04 22:44:59 +03:00
Efraim Flashner 77bb6c227b
gnu: gpm: Fix build. 
* gnu/packages/linux.scm (gpm)[arguments]: Patch autogen.sh shebang
during the 'boottstrap phase.
 2017-09-04 22:36:01 +03:00
Efraim Flashner b82c63d013
gnu: quassel: Update package definition. 
* gnu/packages/irc.scm (quassel)[source]: Remove bundled scripts.
[arguments]: Update comments in 'configure-flags.
[inputs]: Remove oxygen-icons. Move extra-cmake-modules and qttools ...
[native-inputs]: ... to here.
 2017-09-04 22:21:33 +03:00
Leo Famulari 4b1dd9ab31
gnu: i3-wm: Update to 4.14. 
* gnu/packages/wm.scm (i3-wm): Update to 4.14.
 2017-09-04 11:19:27 -04:00
Leo Famulari 6cdb0f4d12
gnu: mpd: Update to 0.20.10. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.10.
 2017-09-04 11:19:23 -04:00
Oleg Pykhalov 65101a2596
gnu: Add python-ghp-import. 
* gnu/packages/version-control.scm (python-ghp-import, python2-ghp-import):
New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-04 15:24:04 +02:00
Oleg Pykhalov 6325309898
gnu: Add emacs-tiny. 
* gnu/packages/emacs.scm (emacs-tiny): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-04 15:24:04 +02:00
Paul Garlick c4d4a77923
gnu: pt-scotch32: use keyword arguments from "scotch32" 
*gnu/packages/maths.scm (pt-scotch32) [arguments]: substitute keyword
arguments from "scotch32" package, ensuring that the INTSIZE32 macro is
set

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-04 15:24:04 +02:00
Mark H Weaver 6bd1c41e87
gnu: linux-libre: Update to 4.13. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.
(%linux-libre-hash): Update hash.
* gnu/packages/aux-files/linux-libre/4.12-i686.conf,
gnu/packages/aux-files/linux-libre/4.12-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.13-i686.conf,
gnu/packages/aux-files/linux-libre/4.13-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
 2017-09-04 05:31:07 -04:00
Efraim Flashner 709a3bb7b8
gnu: weechat: Change to cmake-build-system. 
* gnu/packages/irc.scm (weechat)[build-system]: Switch to
cmake-build-system.
[arguments]: Remove configure-flags, disable tets, remove
'autogen phase.
[inputs]: Remove diffutils, libltdl, openssl, cyrus-sasl. Move gettext ...
[native-inputs]: ... to here. Remove autoconf, file, autogen, automake,
libtool.
 2017-09-04 11:21:42 +03:00
Kei Kebreau d10092b849
gnu: Put autoconf-related phases immediately after the 'unpack phase. 
* gnu/packages/audio.scm (audacity, rtmidi)[arguments]: Correct phases
accordingly.
* gnu/packages/bioinformatics.scm (mash, seek, vsearch, emboss,
htslib-for-sambamba)[arguments]: Likewise.
* gnu/packages/ci.scm (cuirass)[arguments]: Likewise.
* gnu/packages/compression.scm (minizip, xdelta)[arguments]: Likewise.
* gnu/packages/cpp.scm (libzen)[arguments]: Likewise.
* gnu/packages/crypto.scm (opendht)[arguments]: Likewise.
* gnu/packages/databases.scm (4store, mdbtools)[arguments]: Likewise.
* gnu/packages/debug.scm (stress-make)[arguments]: Likewise.
* gnu/packages/dns.scm (dnscrypt-proxy, dnscrypt-wrapper)[arguments]:
Likewise.
* gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Likewise.
* gnu/packages/embedded.scm (libjaylink, openocd)[arguments]: Likewise.
* gnu/packages/engineering.scm (gerbv)[arguments]: Likewise.
* gnu/packages/erlang.scm (erlang)[arguments]: Likewise.
* gnu/packages/ftp.scm (weex)[arguments]: Likewise.
* gnu/packages/gnome.scm (dia)[arguments]: Likewise.
* gnu/packages/gnunet.scm (gnurl, guile-gnunet)[arguments]: Likewise.
* gnu/packages/gtk.scm (guile-rsvg, graphene)[arguments]: Likewise.
* gnu/packages/guile.scm (guildhall, guile-ics, guile-sqlite3)[arguments]:
Likewise.
* gnu/packages/ibus.scm (ibus-libpinyin)[arguments]: Likewise.
* gnu/packages/irc.scm (weechat)[arguments]: Likewise.
* gnu/packages/java.scm (classpath-devel)[arguments]: Likewise.
* gnu/packages/libreoffice.scm (libetonyek)[arguments]: Likewise.
* gnu/packages/libusb.scm (hidapi)[arguments]: Likewise.
* gnu/packages/linux.scm (gpm)[arguments]: Likewise.
* gnu/packages/logging.scm (glog)[arguments]: Likewise.
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Likewise.
* gnu/packages/mail.scm (dovecot-trees, dovecot-libsodium-plugin, esmtp)
[arguments]: Likewise.
* gnu/packages/messaging.scm (freetalk, libmesode, libstrophe)[arguments]:
Likewise.
* gnu/packages/microcom.scm (microcom)[arguments]: Likewise.
* gnu/packages/ocaml.scm (ocaml-ssl)[arguments]: Likewise.
* gnu/packages/parallel.scm (slurm)[arguments]: Likewise.
* gnu/packages/pdf.scm (libharu)[arguments]: Likewise.
* gnu/packages/samba.scm (cifs-utils)[arguments]: Likewise.
* gnu/packages/serialization.scm (msgpack)[arguments]: Likewise.
* gnu/packages/shells.scm (scsh)[arguments]: Likewise.
* gnu/packages/telephony.scm (libiax2)[arguments]: Likewise.
* gnu/packages/textutils.scm (dotconf)[arguments]: Likewise.
* gnu/packages/version-control.scm (findnewest)[arguments]: Likewise.
* gnu/packages/video.scm (libmediainfo, mediainfo)[arguments]: Likewise.
 2017-09-04 00:10:59 -04:00
Efraim Flashner 5804c7b616
gnu: libmateweather: Update inputs. 
* gnu/packages/mate.scm (libmateweather)[inputs]: Remove gdk-pixpuf.
Move dconf ...
[native-inputs]: ... to here.
 2017-09-03 18:01:12 +03:00
ng0 6a548c56ef
gnu: mate-desktop: Add 'gtk-doc' back to native-inputs. 
* gnu/packages/mate.scm (mate-desktop)[native-inputs]: Uncomment
'gtk-doc' as input.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-03 16:18:15 +03:00
ng0 60692df286
gnu: mate-themes: Update to 3.22.13. 
* gnu/packages/mate.scm (mate-themes): Update to 3.22.13.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-03 16:18:14 +03:00
ng0 68d2eea0b8
gnu: mate-themes: Update inputs. 
* gnu/packages/mate.scm (mate-themes)[inputs]: Remove gtk+, gtk-engines,
murrine. Move gdk-pixbuf ...
[native-inputs]: ... to here. Add gtk+@2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-03 16:18:11 +03:00
ng0 4915c51986
gnu: mate-icon-theme: Remove 'gtk+' from native-inputs. 
* gnu/packages/mate.scm (mate-icon-theme)[native-inputs]: Remove 'gtk+'.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-03 16:18:08 +03:00
ng0 833b7e0af0
gnu: mate: Use https. 
* gnu/packages/mate.scm (mate-icon-theme)[source, home-page]: Use https.
(mate-themes)[source, home-page]: Likewise.
(mate-desktop)[source, home-page]: Likewise.
(libmateweather)[source, home-page]: Likewise.
(mate-menus)[source, home-page]: Likewise.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-03 16:18:04 +03:00
Mark H Weaver 3c7c916161
gnu: icecat: Update to 52.3.0-gnu1 and add more upstream fixes. 
* gnu/packages/gnuzilla.scm (icecat): Update to 52.3.0-gnu1.
[source]: Remove outdated patches and add more selected fixes from
upstream mozilla-esr52.
 2017-09-02 19:50:58 -04:00
Mark H Weaver 9a37764014
gnu: linux-libre@4.9: Update to 4.9.47. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.47.
 2017-09-02 17:46:22 -04:00
Mark H Weaver 3e51cd8c76
gnu: linux-libre@4.4: Update to 4.4.86. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.86.
 2017-09-02 17:45:37 -04:00
Jelle Licht 448339709d
gnu: node: Update to 8.4.0. 
* gnu/packages/patches/node-9077.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/node.scm (node): Update to 8.4.0.
(node)[arguments]: Removed broken linter test. Removed dns test.
 2017-09-02 22:59:18 +02:00
ng0 4da9beab14
gnu: Add emacs-base16-theme. 
* gnu/packages/emacs.scm (emacs-base16-theme): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-09-02 22:40:58 +03:00
Oleg Pykhalov eaf4ba6ef3
gnu: Add emacs-browse-at-remote. 
* gnu/packages/emacs.scm (emacs-browse-at-remote): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-09-02 22:40:58 +03:00
Alex Kost 780162c797
gnu: emacs-guix: Update to 0.3.3. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.3.3.
 2017-09-02 22:40:58 +03:00
Andreas Enge c64692a72d
gnu: pari-gp: Update to 2.9.3. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.9.3.
 2017-09-02 17:11:49 +02:00
Leo Famulari 7bac819614
gnu: rosegarden: Import bash and lirc modules. 
This is a followup to commit 9bc38f2872.

* gnu/packages/music.scm (define-module): Import (gnu packages bash) and
(gnu packages lirc).
 2017-09-02 11:07:57 -04:00
Leo Famulari 631c9f743f
gnu: net-tools: Build from a source archive instead of a Git checkout. 
* gnu/packages/linux.scm (net-tools)[source]: Use url-fetch and adjust
the source URL accordingly.
[native-inputs]: Add UNZIP.
(net-tools-for-tests)[native-inputs]: Add field so that we can exclude UNZIP.
 2017-09-02 11:07:56 -04:00
Kei Kebreau d536113df0
gnu: openjpeg: Fix CVE-2017-{14040,14041}. 
* gnu/packages/image.scm (openjpeg)[source]: Add patches.
* gnu/packages/patches/openjpeg-CVE-2017-14040.patch,
gnu/packages/patches/openjpeg-CVE-2017-14041.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-09-02 10:21:03 -04:00
宋文武 65e4109cdc
gnu: emacs-cider: Update to 0.15.0. 
* gnu/packages/emacs.scm (emacs-cider): Update to 0.15.0.
 2017-09-02 21:23:34 +08:00
Danny Milosavljevic 9bc38f2872
gnu: Add rosegarden. 
* gnu/packages/music.scm (rosegarden): New variable.
 2017-09-02 14:29:11 +02:00
Hartmut Goebel 7ae9542bf3
gnu: Add prison. 
* gnu/packages/kde-frameworks.scm (prison): New variable.
 2017-09-02 13:11:31 +02:00
Hartmut Goebel 7ade80220b
gnu: Add libdmtx. 
* gnu/packages/aidc.scm (libdmtx): New variable.
 2017-09-02 13:11:30 +02:00
Marius Bakke 3fe666aa29
gnu: perl-www-opensearch: Enable tests. 
Fixes <https://bugs.gnu.org/28253>.

* gnu/packages/web.scm (perl-www-opensearch)[native-inputs]: Add
PERL-CLASS-ERRORHANDLER, PERL-DATETIME, PERL-DATETIME-FORMAT-MAIL,
PERL-DATETIME-FORMAT-W3CDTF, PERL-FEED-FIND, PERL-MODULE-PLUGGABLE,
PERL-URI-FETCH, PERL-TEST-SIMPLE, PERL-XML-ATOM and PERL-XML-RSS.
 2017-09-02 12:32:51 +02:00
Marius Bakke 47111bb365
gnu: ffmpeg@2.8: Update to 2.8.13. 
* gnu/packages/video.scm (ffmpeg-2.8): Update to 2.8.13.
 2017-09-02 12:08:54 +02:00
Maxim Cournoyer f306825da8
gnu: exiv2: Update source checksum. 
The source archive was updated in place; only a cleanup of non functional
files was done (see: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=28326).

* gnu/packages/image.scm (exiv2)[source]: Update hash.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-09-02 10:40:42 +02:00
Ethan R. Jones 7bd65a6304
gnu: swish-e: Work around compilation error and test failures. 
* gnu/packages/search.scm (swish-e)[inputs]: Remove ZLIB and LIBXML2.
[arguments]: Add #:configure-flags.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-02 00:58:11 +02:00
Muriithi Frederick Muriuki 2038a48f4d
gnu: Add python-xenon. 
* gnu/packages/python.scm (python-xenon, python2-xenon) New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-02 00:58:11 +02:00
Tobias Geerinckx-Rice 6106d195a2
gnu: perl-html-tree: Update to 5.07. 
* gnu/packages/web.scm (perl-html-tree): Update to 5.07.
 2017-09-01 23:52:19 +02:00
Tobias Geerinckx-Rice 33fd32c285
gnu: youtube-dl: Update to 2017.09.02. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.09.02.
 2017-09-01 23:52:19 +02:00
Tobias Geerinckx-Rice bbfc523d95
gnu: dub: Update to 1.5.0. 
* gnu/packages/ldc.scm (dub): Update to 1.5.0.
 2017-09-01 23:52:19 +02:00
Tobias Geerinckx-Rice def056d138
gnu: perl-context-preserve: Update source URL. 
* gnu/packages/perl.scm (perl-context-preserve)[source]: Update CPAN author.
 2017-09-01 23:52:18 +02:00
Tobias Geerinckx-Rice 0c3a1674e4
gnu: python-ruamel.yaml: Update to 0.15.33. 
* gnu/packages/serialization.scm (python-ruamel.yaml): Update to 0.15.33.
 2017-09-01 23:52:18 +02:00
Tobias Geerinckx-Rice d5909be93b
gnu: gparted: Update home page. 
* gnu/packages/disk.scm (gparted)[home-page]: Use now-HTTPS gparted.org.
 2017-09-01 23:52:18 +02:00
Ricardo Wurmus ebbb6301a3
gnu: r-minimal: Update to 3.4.1. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
 2017-09-01 22:05:39 +02:00
Leo Famulari 3bf0245bb8
gnu: vdirsyncer: Update to 0.16.2. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.2.
 2017-09-01 13:54:23 -04:00
Leo Famulari 3a91ac8378
gnu: python-click-log: Update to 0.2.0. 
* gnu/packages/python.scm (python-click-log): Update to 0.2.0.
 2017-09-01 13:54:23 -04:00
Leo Famulari 19ecdbedd3
gnu: python-click-threading: Update to 0.4.3. 
* gnu/packages/python.scm (python-click-threading): Update to 0.4.3.
[source]: Use pypi-uri.
 2017-09-01 13:54:20 -04:00
Leo Famulari 2da21e48a8
gnu: python-icalendar: Update to 3.11.7. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.7.
 2017-09-01 13:41:39 -04:00
Ricardo Wurmus 81195d139f
gnu: r-genomicalignments: Update to 1.12.2. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.2.
 2017-09-01 15:11:58 +02:00
Ricardo Wurmus 89b620e7ee
gnu: r-tidyr: Update to 0.7.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0.
[propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and
r-tidyselect.
 2017-09-01 15:11:58 +02:00
Ricardo Wurmus c4a4ef39ed
gnu: Add r-tidyselect. 
* gnu/packages/statistics.scm (r-tidyselect): New variable.
 2017-09-01 15:11:58 +02:00
Ricardo Wurmus db2e43863c
gnu: r-vegan: Update to 2.4-4. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-4.
[native-inputs]: Remove r-knitr.
 2017-09-01 15:11:57 +02:00
Ricardo Wurmus 7b92acdf52
gnu: r-maldiquant: Update to 1.16.4. 
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.16.4.
 2017-09-01 15:11:57 +02:00
Ricardo Wurmus 6bd27981f6
gnu: r-bookdown: Update to 0.5. 
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.5.
 2017-09-01 15:11:56 +02:00
Ricardo Wurmus c62276b2fa
gnu: r-ksamples: Update to 1.2-7. 
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-7.
 2017-09-01 15:11:56 +02:00
Ricardo Wurmus 28f2f89391
gnu: r-distillery: Update to 1.0-4. 
* gnu/packages/cran.scm (r-distillery): Update to 1.0-4.
 2017-09-01 15:11:55 +02:00
Ricardo Wurmus f7b172187a
gnu: r-sp: Update to 1.2-5. 
* gnu/packages/cran.scm (r-sp): Update to 1.2-5.
 2017-09-01 15:11:55 +02:00
Ricardo Wurmus bf958fcd63
gnu: r-ggally: Update to 1.3.2. 
* gnu/packages/cran.scm (r-ggally): Update to 1.3.2.
 2017-09-01 15:11:55 +02:00
Ricardo Wurmus 38ea6cfab4
gnu: r-reshape: Update to 0.8.7. 
* gnu/packages/cran.scm (r-reshape): Update to 0.8.7.
 2017-09-01 15:11:54 +02:00
Ricardo Wurmus eeb5432802
gnu: r-powerlaw: Update to 0.70.1. 
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.1.
 2017-09-01 15:11:54 +02:00
Ricardo Wurmus a5c2980486
gnu: r-circlize: Update to 0.4.1. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.1.
 2017-09-01 15:11:54 +02:00
Ricardo Wurmus ea4d4f7616
gnu: r-shape: Update to 1.4.3. 
* gnu/packages/cran.scm (r-shape): Update to 1.4.3.
 2017-09-01 15:11:53 +02:00
Ricardo Wurmus 9077f6d9aa
gnu: r-tclust: Update to 1.3-1. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
 2017-09-01 15:11:53 +02:00
Ricardo Wurmus 347cab66b6
gnu: r-fastcluster: Update to 1.1.24. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
 2017-09-01 15:11:52 +02:00
Ricardo Wurmus d574d6bcc2
gnu: r-rcpparmadillo: Update to 0.7.960.1.2. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
 2017-09-01 15:11:52 +02:00
Ricardo Wurmus 2dda8fca6f
gnu: r-plotrix: Update to 3.6-6. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus 7d60652ebe
gnu: r-httr: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-httr): Update to 1.3.1.
[propagated-inputs]: Remove r-digest and r-stringr.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus e3323e0707
gnu: r-commonmark: Update to 1.4. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus 5d84369bda
gnu: r-ade4: Update to 1.7-8. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
 2017-09-01 15:11:50 +02:00
Ricardo Wurmus fb10c923b3
gnu: r-tibble: Update to 1.3.4. 
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
 2017-09-01 15:11:50 +02:00
Ricardo Wurmus edd5fd7208
gnu: r-rlang: Update to 0.1.2. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus 5a00ef0950
gnu: r-knitr: Update to 1.17. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.17.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus 3949aef601
gnu: r-bh: Update to 1.65.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus b93881b9c5
gnu: r-scales: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-scales): Update to 0.5.0.
[propagated-inputs]: Add r-r6 and r-viridislite.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus 2d99a31607
gnu: r-mgcv: Update to 1.8-19. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus fefe9f4753
gnu: r-matrix: Update to 1.2-11. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus 3c2a5bf299
gnu: r-servr: Update to 0.7. 
* gnu/packages/web.scm (r-servr): Update to 0.7.
 2017-09-01 15:11:47 +02:00
Julien Lepiller 1cf306639c
gnu: php: Update to 7.1.9. 
* gnu/packages/php.scm (php): Update to 7.1.9.
 2017-09-01 14:17:46 +02:00
Julien Lepiller dcf7a8a660
gnu: java-slf4j-api: Fix tests. 
* gnu/packages/java.scm (java-slf4j-api)[arguments]: Enable tests
Adjust the jar content to prevent a test failure.
 2017-09-01 14:17:24 +02:00
Z. Ren 5fe2a139df
gnu: djvulibre: Remove timestamps from .svgz files. 
* gnu/packages/djvu.scm (djvulibre)[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-01 11:05:32 +02:00
Oleg Pykhalov 833ade67f1
gnu: Add emacs-tuareg. 
* gnu/packages/ocaml.scm (emacs-tuareg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-01 10:39:55 +02:00
ng0 4735393a76
gnu: emacs-ebuild-mode: Update to 1.37. 
* gnu/packages/emacs.scm (emacs-ebuild-mode): Update to 1.37.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-01 10:34:50 +02:00
ng0 ab966b8f61
gnu: Add emacs-2048-game. 
* gnu/packages/emacs.scm (emacs-2048-game): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-01 10:34:36 +02:00
Ricardo Wurmus 75690c9f6b
gnu: r-rcas: Correct license. 
* gnu/packages/bioinformatics.scm (r-rcas)[license]: Use correct license.
 2017-09-01 10:26:31 +02:00
Ricardo Wurmus eda8f36cd6
gnu: r-rcas: Update to 1.3.3. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.3.
 2017-09-01 10:26:30 +02:00
Efraim Flashner 7d099cbe13
gnu: mysql: Enable tests on aarch64. 
* gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling
the tests on aarch64-linux.
 2017-09-01 10:50:39 +03:00
Ben Woodcroft f4bf420c84
gnu: vsearch: Update to 2.4.4. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.4.
 2017-09-01 14:45:57 +08:00
Ben Woodcroft 25bd1fc1c1
gnu: metabat: Update to 2.12.1. 
* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1.
[source]: Remove it.  Use url-fetch.
 2017-09-01 14:45:57 +08:00
Thomas Danckaert 43d01672a1
gnu: netcdf: Fix reproducibility issue; remove unneeded references. 
* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded
  'Configured On' date; truncate reference to compiler store item.
 2017-09-01 08:34:32 +02:00
Thomas Danckaert e464b4550e
gnu: hdf4: Avoid unneeded store references to compilers. 
* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to
  truncate hashes of compiler store items.
 2017-09-01 08:34:32 +02:00
Thomas Danckaert fd0378a147
gnu: hdf5: Avoid unneeded store references to compilers. 
* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch
  "libhdf5.settings", removing references to the C/C++/Fortran compilers.
 2017-09-01 08:34:31 +02:00
Thomas Danckaert e3a1a1deda
gnu: hdf5: Add output for fortran interface. 
* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran.
  [outputs]: Add "fortran".
  [arguments]: Enable Fortran compilation; add "/lib" directory of the fortran
  output to the runpath of the Fortran libs; add a 'split phase to move
  all Fortran-related files to the the Fortran output store location.
 2017-09-01 08:34:24 +02:00
Arun Isaac a0596a2f27
gnu: python2-larch: Enable tests. 
* gnu/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python2-larch)[source]: Use it.
[arguments]: Move 'check' phase to before 'build' phase.
 2017-09-01 11:14:16 +05:30
Arun Isaac f618086220
gnu: python2-ttystatus: Enable tests. 
* gnu/packages/python.scm (python2-ttystatus)[arguments]: Replace 'check'
phase with custom function.
 2017-09-01 11:14:16 +05:30
Arun Isaac 689042e526
gnu: python2-cliapp: Enable tests. 
* gnu/packages/python.scm (python2-cliapp)[arguments]: Replace 'check' phase
with custom function.
 2017-09-01 11:14:16 +05:30
Mark H Weaver fe36ecf5c8
gnu: linux-libre: Update to 4.12.10. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.10.
(%linux-libre-hash): Update hash.
 2017-09-01 00:31:55 -04:00
Mark H Weaver 2131663a76
gnu: linux-libre@4.9: Update to 4.9.46. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.46.
 2017-09-01 00:31:16 -04:00