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Author SHA1 Message Date
Leo Famulari 817e09c174
gnu: Django: Update to 1.11.18 [fixes CVE-2019-3498]. 
* gnu/packages/django.scm (python-django, python2-django): Update to 1.11.18.
 2019-01-09 15:44:36 -05:00
Leo Famulari e82c98abe9
gnu: aria2: Fix CVE-2019-3500. 
* gnu/packages/patches/aria2-CVE-2019-3500.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bittorrent.scm (aria2)[source]: Use it.
 2019-01-09 15:38:19 -05:00
Leo Famulari 45ee3fde87
gnu: hashcat: Update to 5.1.0. 
* gnu/packages/password-utils.scm (hashcat): Update to 5.1.0.
 2019-01-09 14:05:20 -05:00
Danny Milosavljevic f73b7bf6e2
gnu: fasm: Update comments. 
* gnu/packages/assembly.scm (fasm): Update comments.
 2019-01-09 19:33:28 +01:00
Danny Milosavljevic cb95e79f14
gnu: fasm: Fix grammatical errors in description. 
* gnu/packages/assembly.scm (fasm)[description]: Modify.
 2019-01-09 19:33:27 +01:00
Danny Milosavljevic 1bde3d2cbf
gnu: Add dev86. 
* gnu/packages/assembly.scm (dev86): New variable.
 2019-01-09 19:33:27 +01:00
Efraim Flashner ab7aa06cac
gnu: python-pygit2: Update to 0.27.3. 
* gnu/packages/python.scm (python-pygit2): Update to 0.27.3.
[arguments]: Add custom phase to compile with cffi support. Add custom
phase to not require specific versions of python-cffi.
[native-inputs]: Add python-pytest.
 2019-01-09 20:25:50 +02:00
Ludovic Courtès 1b504b498a
gnu: libgit2: Update to 0.27.7. 
* gnu/packages/version-control.scm (libgit2): Update to 0.27.7.
 2019-01-09 18:47:57 +01:00
Tim Gesthuizen 037c3b0ea2
gnu: emacs-irony-mode: Remove propagated input 
emacs-irony-mode finds its server binary because its a propagated input and is
in the path. We can substitute the variable `irony-server-install-prefix` to
not propagate the input and keep the binary isolated from the user.

* gnu/packages/emacs.scm (emacs-irony-mode):
[propagated-inputs] Remove propagated inputs
[inputs] Add emacs-irony-mode-server
[arguments] Add phase substituting the variable of the server path

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Tim Gesthuizen ecf7e4ea43
gnu: emacs-ggtags: Don't require GNU Global in path 
emacs-ggtags relies on the GNU Global tools (global and gtags) to be available
in the path. This way it will grab some random executable if it will find
executables at all.
This is fixed by setting the prefix to GNU Global in the store. This way
emacs-ggtags will use specific deterministic executables.

* gnu/packages/emacs.scm (emacs-ggtags):
[inputs]: Add GNU Global to the inputs
[arguments]: Add a phase for substituting the right path to the executables

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Vasile Dumitrascu b2a5ef2e94
gnu: e2fsprogs: Update to 1.44.5. 
* gnu/packages/linux.scm (e2fsprogs): Update to 1.44.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Vasile Dumitrascu 4287bd19c7
gnu: bind: Update to 9.12.3-P1. 
* gnu/packages/dns.scm (bind): Update to 9.12.3-P1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:57 +01:00
Brett Gilio 25a0ffbf27
gnu: emacs-md4rd: Update to c55512c. 
* gnu/packages/emacs.scm (emacs-md4rd): Update to c55512c.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-09 18:47:56 +01:00
Ricardo Wurmus cba08f60a1
gnu: Add r-mcmc. 
* gnu/packages/cran.scm (r-mcmc): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 39274ab4d9
gnu: Add r-parcor. 
* gnu/packages/cran.scm (r-parcor): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 0af9616d91
gnu: Add r-huge. 
* gnu/packages/cran.scm (r-huge): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 879a15203b
gnu: Add r-ppls. 
* gnu/packages/cran.scm (r-ppls): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 17932a0f63
gnu: Add r-epi. 
* gnu/packages/cran.scm (r-epi): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 728012dae8
gnu: Add r-etm. 
* gnu/packages/cran.scm (r-etm): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 7aeec0cf37
gnu: Add r-cmprsk. 
* gnu/packages/cran.scm (r-cmprsk): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus e3c0e3e360
gnu: Add r-protviz. 
* gnu/packages/cran.scm (r-protviz): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus fe4e9f0349
gnu: Add r-rbamtools. 
* gnu/packages/cran.scm (r-rbamtools): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus e50722c8e6
gnu: Add r-genenet. 
* gnu/packages/cran.scm (r-genenet): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 6a5bfe09eb
gnu: Add r-longitudinal. 
* gnu/packages/cran.scm (r-longitudinal): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 1ea708af8c
gnu: Add r-survivalroc. 
* gnu/packages/cran.scm (r-survivalroc): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus afc0d8158b
gnu: Add r-bootstrap. 
* gnu/packages/cran.scm (r-bootstrap): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 4fcbd7eaf3
gnu: Add r-rmeta. 
* gnu/packages/cran.scm (r-rmeta): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus c2d6e866ac
gnu: Add r-drc. 
* gnu/packages/cran.scm (r-drc): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 99c164a5c7
gnu: Add r-spatialextremes. 
* gnu/packages/cran.scm (r-spatialextremes): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 32725458b7
gnu: Add r-fields. 
* gnu/packages/cran.scm (r-fields): New variable.
 2019-01-09 17:13:52 +01:00
Ricardo Wurmus 90104ecd66
gnu: Add r-spam. 
* gnu/packages/cran.scm (r-spam): New variable.
 2019-01-09 17:13:51 +01:00
Ricardo Wurmus f51dcc275e
gnu: Add r-dotcall64. 
* gnu/packages/cran.scm (r-dotcall64): New variable.
 2019-01-09 17:13:49 +01:00
Ricardo Wurmus 658b2b62cb
gnu: Add r-assertive. 
* gnu/packages/cran.scm (r-assertive): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 39231abf4d
gnu: Add r-assertive-data. 
* gnu/packages/cran.scm (r-assertive-data): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 39ef8e097b
gnu: Add r-assertive-data-uk. 
* gnu/packages/cran.scm (r-assertive-data-uk): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 6d3702e5ce
gnu: Add r-assertive-data-us. 
* gnu/packages/cran.scm (r-assertive-data-us): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 66d0a0a706
gnu: Add r-assertive-strings. 
* gnu/packages/cran.scm (r-assertive-strings): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 29d9a2affb
gnu: Add r-assertive-datetimes. 
* gnu/packages/cran.scm (r-assertive-datetimes): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 50ce8b1e2c
gnu: Add r-assertive-code. 
* gnu/packages/cran.scm (r-assertive-code): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 1f0a761a14
gnu: Add r-assertive-files. 
* gnu/packages/cran.scm (r-assertive-files): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 5e3bd35506
gnu: Add r-assertive-types. 
* gnu/packages/cran.scm (r-assertive-types): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus dcafcfb4fd
gnu: Add r-assertive-reflection. 
* gnu/packages/cran.scm (r-assertive-reflection): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus c358b5d418
gnu: Add r-assertive-models. 
* gnu/packages/cran.scm (r-assertive-models): New variable.
 2019-01-09 15:43:51 +01:00
Ricardo Wurmus 905aa46ae5
gnu: Add r-assertive-matrices. 
* gnu/packages/cran.scm (r-assertive-matrices): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 2da2d2f605
gnu: Add r-assertive-sets. 
* gnu/packages/cran.scm (r-assertive-sets): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus dac9c1f604
gnu: Add r-assertive-numbers. 
* gnu/packages/cran.scm (r-assertive-numbers): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 4b2d17edaa
gnu: Add r-assertive-properties. 
* gnu/packages/cran.scm (r-assertive-properties): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 8004bb2451
gnu: Add r-assertive-base. 
* gnu/packages/cran.scm (r-assertive-base): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus a536c7c9ad
gnu: Add r-rmpfr. 
* gnu/packages/cran.scm (r-rmpfr): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 1ab5160434
gnu: Add r-gmp. 
* gnu/packages/cran.scm (r-gmp): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus dfd09f7bad
gnu: Add r-bigrquery. 
* gnu/packages/cran.scm (r-bigrquery): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus ad6fea1690
gnu: Add r-ontologyindex. 
* gnu/packages/cran.scm (r-ontologyindex): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 9170eb7f1f
gnu: Add r-rapidjsonr. 
* gnu/packages/cran.scm (r-rapidjsonr): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus e7176ac5bd
gnu: Add r-pixmap. 
* gnu/packages/cran.scm (r-pixmap): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 895efece37
gnu: Add r-strucchange. 
* gnu/packages/cran.scm (r-strucchange): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus d28be7b76b
gnu: Add r-als. 
* gnu/packages/cran.scm (r-als): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 9401f56b81
gnu: Add r-chemometricswithr. 
* gnu/packages/cran.scm (r-chemometricswithr): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 25861356ed
gnu: Add r-iso. 
* gnu/packages/cran.scm (r-iso): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 00436e2cac
gnu: Add r-nnls. 
* gnu/packages/cran.scm (r-nnls): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus 2871b670a8
gnu: Add r-kohonen. 
* gnu/packages/cran.scm (r-kohonen): New variable.
 2019-01-09 15:43:50 +01:00
Ricardo Wurmus d0eb09a134
gnu: Add r-grimport. 
* gnu/packages/cran.scm (r-grimport): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 7eec973e81
gnu: Add r-tractor-base. 
* gnu/packages/cran.scm (r-tractor-base): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus b98662c53a
gnu: Add r-reportr. 
* gnu/packages/cran.scm (r-reportr): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus cb03d6c6f3
gnu: Add r-ore. 
* gnu/packages/cran.scm (r-ore): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 6e09f50613
gnu: Add r-shades. 
* gnu/packages/cran.scm (r-shades): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus f79e63a571
gnu: Add r-rnifti. 
* gnu/packages/cran.scm (r-rnifti): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus b2e777b27c
gnu: Add r-tfmpvalue. 
* gnu/packages/cran.scm (r-tfmpvalue): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus adcd0cc87e
gnu: Add r-splitstackshape. 
* gnu/packages/cran.scm (r-splitstackshape): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 5f0fbfc0ad
gnu: Add r-lassopv. 
* gnu/packages/cran.scm (r-lassopv): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 3d62d98e69
gnu: Add r-flare. 
* gnu/packages/cran.scm (r-flare): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 029425cbce
gnu: Add r-vbsr. 
* gnu/packages/cran.scm (r-vbsr): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 5574cb812a
gnu: Add r-rpostgresql. 
* gnu/packages/cran.scm (r-rpostgresql): New variable.
 2019-01-09 15:43:49 +01:00
Ricardo Wurmus 3088b3fc5b
gnu: Add r-rspectra. 
* gnu/packages/cran.scm (r-rspectra): New variable.
 2019-01-09 15:43:45 +01:00
Ludovic Courtès 0991fd5336
build: Require Guile 2.2. 
* configure.ac: Require Guile 2.2.
* README: Adjust accordingly.
* doc/guix.texi (Requirements): Likewise.
* gnu/packages/package-management.scm (guile2.0-guix): Deprecate.
(guix-minimal): Inherit from GUIX, not from GUILE2.0-GUIX.
 2019-01-09 14:47:53 +01:00
Eric Bavier fefcb122ac
gnu: dvdisaster: Run regression tests. 
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Remove #:tests? argument.
Add 'check' phase.
 2019-01-08 09:09:31 -06:00
Eric Bavier 98b0ec7fa6
gnu: dvdisaster: Install desktop file. 
* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add 'install-desktop phase.
 2019-01-08 09:09:25 -06:00
Clément Lassieur 627e6d8c11
gnu: prosody: Update to 0.11.1. 
* gnu/packages/messaging.scm (prosody): Update to 0.11.1.
[arguments]: Replace "Makefile" with "GNUmakefile".  Change "5.1" to "5.2".
Explain why there are no tests.
[inputs]: Replace lua-5.1, lua5.1-bitop, lua5.1-expat, lua5.1-socket,
lua5.1-filesystem, lua5.1-sec with lua-5.2, lua5.2-bitop, lua5.2-expat,
lua5.2-socket, lua5.2-filesystem, lua5.2-sec.
 2019-01-08 15:23:36 +01:00
Clément Lassieur eb5b6c5777
gnu: Add lua5.2-sec. 
* gnu/packages/lua.scm (lua5.2-sec): New variable.
(make-lua-sec): New procedure.
(lua5.1-sec, lua5.2-sec): Call it.
 2019-01-08 15:23:36 +01:00
Clément Lassieur d994325747
gnu: Add lua-filesystem and lua5.2-filesystem. 
* gnu/packages/lua.scm (lua-filesystem, lua5.2-filesystem): New variables.
(make-lua-filesystem): New procedure.
(lua-filesystem, lua5.1-filesystem, lua5.2-filesystem): Call it.
 2019-01-08 15:23:36 +01:00
Clément Lassieur 253aab77c5
gnu: Add lua5.2-socket. 
* gnu/packages/lua.scm (lua5.2-socket): New variable.
(make-lua-socket): New procedure.
(lua5.1-socket, lua5.2-socket): Call it.
 2019-01-08 15:23:36 +01:00
Clément Lassieur 7c97a0631e
gnu: Add lua5.2-expat. 
* gnu/packages/lua.scm (lua5.2-expat): New variable.
(make-lua-expat): New procedure.
(lua5.1-expat, lua5.2-expat): Call it.
 2019-01-08 15:23:36 +01:00
Efraim Flashner 580f33e119
gnu: criu: Update to 3.11. 
* gnu/packages/virtualization.scm (criu): Update to 3.11.
[arguments]: Add custom phase to patch python calls.
 2019-01-08 12:29:42 +02:00
Efraim Flashner 49fe965d28
gnu: criu: Fix building on armhf-linux. 
* gnu/packages/virtualization.scm (criu)[arguments]: Hardcode the arm
version in the Makefile.
 2019-01-08 12:29:40 +02:00
Clément Lassieur b509381089
gnu: gajim-omemo: Update to 2.6.26. 
* gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.26.
 2019-01-08 10:19:55 +01:00
Clément Lassieur 5cfec72f39
gnu: gajim: Update to 1.1.1. 
* gnu/packages/messaging.scm (gajim): Update to 1.1.1.
[arguments]: Replace #:test-target with a 'check' phase.
 2019-01-08 10:19:55 +01:00
Tobias Geerinckx-Rice eac5d425cd
gnu: tor: Update to 0.3.4.10. 
* gnu/packages/tor.scm (tor): Update to 0.3.4.10.
 2019-01-08 04:21:53 +01:00
Tobias Geerinckx-Rice be4f8391a4
gnu: privoxy: Update to 3.0.28. 
* gnu/packages/tor.scm (privoxy): Update to 3.0.28.
 2019-01-08 04:21:52 +01:00
Rutger Helling 3c85058c0e
gnu: libnet: Update to 1.2-rc3. 
* gnu/packages/networking.scm (libnet): Update to 1.2-rc3.
[source]: Use git-fetch.
 2019-01-07 22:07:01 +01:00
Julien Lepiller 8737666a99
gnu: ocaml-graph: Add upstream-name. 
* gnu/packages/ocaml.scm (ocaml-graph)[properties]: Add upstream-name.
 2019-01-07 22:05:47 +01:00
Julien Lepiller 33af92dd99
gnu: Move coq packages from ocaml to coq. 
* gnu/packages/ocaml.scm (coq, proof-general, coq-flocq, coq-gappa, coq-mathcomp)
(coq-coquelicot, coq-bignums, coq-interval): Move from here...
* gnu/packages/coq.scm: ... to here.  New file.
 2019-01-07 22:05:37 +01:00
Alex Kost 912f0541a3
gnu: emacs-guix: Update to 0.5.1.1. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.1.1.
 2019-01-07 22:52:46 +03:00
Danny Milosavljevic 40c7476af8
gnu: containerd: Update synopsis. 
* gnu/packages/docker.scm (containerd)[synopsis]: Modify.
 2019-01-07 19:13:04 +01:00
Danny Milosavljevic 54891e850a
gnu: containerd: Enable tests. 
* gnu/packages/docker.scm (containerd)[arguments]: Remove #:tests?.
 2019-01-07 19:12:14 +01:00
Ricardo Wurmus 1f1e338ad4
gnu: Add missing use-module clause. 
This is a follow-up to 4e5b8f7215.

* gnu/packages/docker.scm: Add missing use-module clause.
 2019-01-07 18:45:23 +01:00
Ricardo Wurmus d53b23176f
gnu: Add r-corpcor. 
* gnu/packages/cran.scm (r-corpcor): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus e3bb076678
gnu: Add r-ddrtree. 
* gnu/packages/cran.scm (r-ddrtree): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus 9f33d76c33
gnu: Add r-qlcmatrix. 
* gnu/packages/cran.scm (r-qlcmatrix): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus 58bc8857fb
gnu: Add r-combinat. 
* gnu/packages/cran.scm (r-combinat): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus 13f5837b4c
gnu: Add r-densityclust. 
* gnu/packages/cran.scm (r-densityclust): New variable.
 2019-01-07 18:44:04 +01:00
Ricardo Wurmus b614009e6a
gnu: Add r-sparsesvd. 
* gnu/packages/cran.scm (r-sparsesvd): New variable.
 2019-01-07 18:44:04 +01:00