Commit Graph

58 Commits

Author SHA1 Message Date
Ricardo Wurmus 346a829a85 gnu: Add HISAT.
* gnu/packages/bioinformatics.scm (hisat): New variable.
2015-02-10 14:37:13 +01:00
Ricardo Wurmus d7678942f9 gnu: Add flexbar.
* gnu/packages/bioinformatics.scm (flexbar): New variable.
2015-02-09 10:26:28 +01:00
Ricardo Wurmus d3517eda25 gnu: Add seqan.
* gnu/packages/bioinformatics.scm (seqan): New variable.
2015-02-09 10:26:20 +01:00
Ricardo Wurmus 241e122193 gnu: bowtie: fix build errors
* gnu/packages/bioinformatics.scm (bowtie): Add 'supported-systems' field and
  add Makefile patch.
* gnu/packages/patches/bowtie-fix-makefile.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2015-01-30 10:45:27 +01:00
Ricardo Wurmus 2c7ee16720 gnu: Add bowtie
* gnu/packages/bioinformatics.scm (bowtie): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-19 18:50:28 +01:00
Ricardo Wurmus 81de56479a gnu: Add bedtools
* gnu/packages/bioinformatics.scm (bedtools): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-16 18:17:15 +01:00
Ricardo Wurmus f3cd952b45 gnu: samtools: disable tests for non-64-bit systems
* gnu/packages/bioinformatics.scm (samtools): disable tests for all non-64-bit
  systems because of an upstream bug in the test data.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-16 18:17:15 +01:00
Ricardo Wurmus 4e10a22168 gnu: Add samtools
* gnu/packages/bioinformatics.scm: New file
* gnu-system.am (GNU_SYSTEM_MODULES): Add it

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-13 00:01:06 +01:00