Commit Graph

38574 Commits

Author SHA1 Message Date
Ricardo Wurmus d1ee1540d4
gnu: r-dose: Update to 3.10.1.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.1.
2019-05-30 13:40:48 +02:00
Andy Tai 169d63f533
gnu: Add gthumb.
* gnu/packages/gnome.scm (gthumb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-30 11:50:05 +02:00
Reza Alizadeh Majd dc37301330
gnu: sddm: Add QtQuick-related dependencies to sddm.
* gnu/packages/display-managers.scm (sddm): add QtQuick related
dependencies to sddm package in order to `sddm-greeter` application
to load user defined themes which are based on QtQuick.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-29 23:16:49 +02:00
Ricardo Wurmus 4c8603e808
gnu: r-statmod: Update to 1.4.32.
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.32.
2019-05-29 22:38:05 +02:00
Ricardo Wurmus 765d327c85
gnu: r-fields: Update to 9.8-3.
* gnu/packages/cran.scm (r-fields): Update to 9.8-3.
2019-05-29 22:38:05 +02:00
Ricardo Wurmus a1ac29f80d
gnu: r-bayestestr: Update to 0.2.0.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.0.
2019-05-29 22:38:05 +02:00
Carl Dong a15cee50ce
gnu: Use make-linux-libre-headers.
* gnu/packages/linux.scm (make-linux-libre-headers): New variable.
(linux-libre): Rename to...
(linux-libre-5.1): ...this.
(linux-libre-headers): Rename to...
(linux-libre-headers-4.14.67): ...this.
(linux-libre-5.1, linux-libre-headers-4.14.67): Use make-linux-libre-headers.
(linux-libre-5.1, linux-libre-headers-5.1, linux-libre-headers-4.19,
%linux-libre-4.15-version, %linux-libre-4.15-hash, linux-libre-4.15,
linux-libre-headers-4.15, linux-libre-headers-4.14): New variables.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 18:19:16 +02:00
Carl Dong 2ea77d48a7
gnu: cross-base: Allow non-default linux-headers.
* gnu/packages/cross-base.scm (cross-kernel-headers): Add
LINUX-HEADERS optional argument.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 15:44:54 +02:00
Carl Dong 7180dd6716
gnu: Add basic support for riscv64-linux-gnu targets.
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add
"riscv64-linux".
* gnu/packages/linux.scm (system->linux-architecture): Add "riscv"
prefix.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 15:40:31 +02:00
Nicolas Goaziou 4f963be052
gnu: Add childsplay.
* gnu/packages/education.scm (childsplay): New variable.
2019-05-29 13:09:53 +02:00
Mathieu Othacehe 694cb8dc62
installer: Fix wifi menu crash with hidden SSIDs.
This fixes https://issues.guix.gnu.org/issue/35622.

* gnu/installer/connman.scm (<service>): Mention that name may be false.
* gnu/installer/newt/wifi.scm (wifi-services): Filter out wifi services
without name.

Co-authored by: Pierre Neidhardt <mail@ambrevar.xyz>
2019-05-29 11:44:49 +02:00
Ricardo Wurmus 4b92dac20f
gnu: awscli: Add missing input.
Fixes <https://bugs.gnu.org/35980>.

* gnu/packages/python-web.scm (awscli)[arguments]: Add build phase
"fix-reference-to-groff".
[inputs]: Add groff.
2019-05-29 10:56:28 +02:00
Ricardo Wurmus d37ba98409
gnu: r-scran: Update to 1.12.1.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.1.
2019-05-29 00:02:42 +02:00
Ricardo Wurmus 55cd48508e
gnu: r-scater: Update to 1.12.2.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.2.
2019-05-29 00:02:37 +02:00
Ricardo Wurmus 102cf9a1ca
gnu: r-sva: Update to 3.32.1.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.1.
2019-05-29 00:02:31 +02:00
Ricardo Wurmus 24f46e6e9e
gnu: r-genomicfeatures: Update to 1.36.1.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.1.
2019-05-29 00:02:25 +02:00
Ricardo Wurmus 4eea449aaa
gnu: r-edger: Update to 3.26.4.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.4.
2019-05-29 00:02:17 +02:00
Ricardo Wurmus 4929a30f69
gnu: r-variantannotation: Update to 1.30.1.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.1.
2019-05-29 00:02:10 +02:00
Ricardo Wurmus e4519ee73d
gnu: r-atacseqqc: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.1.
2019-05-28 23:56:36 +02:00
Ricardo Wurmus 13b49976b7
gnu: r-icobra: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.1.
2019-05-28 23:56:31 +02:00
Ricardo Wurmus 85d0bd5340
gnu: r-chippeakanno: Update to 3.18.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.1.
2019-05-28 23:56:27 +02:00
Ricardo Wurmus f43ec9e96a
gnu: r-geosphere: Update to 1.5-10.
* gnu/packages/cran.scm (r-geosphere): Update to 1.5-10.
2019-05-28 23:56:15 +02:00
Ricardo Wurmus 0fe52daa59
gnu: r-ggfortify: Update to 0.4.7.
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.7.
2019-05-28 23:56:08 +02:00
Ricardo Wurmus 7a8577717f
gnu: r-wgcna: Update to 1.68.
* gnu/packages/cran.scm (r-wgcna): Update to 1.68.
2019-05-28 23:56:04 +02:00
Ricardo Wurmus 650e8defa0
gnu: r-bookdown: Update to 0.11.
* gnu/packages/cran.scm (r-bookdown): Update to 0.11.
[propagated-inputs]: Add ghc-pandoc; remove r-yaml.
2019-05-28 23:55:44 +02:00
Ricardo Wurmus 20656a0202
gnu: r-upsetr: Update to 1.4.0.
* gnu/packages/cran.scm (r-upsetr): Update to 1.4.0.
2019-05-28 23:55:38 +02:00
Ricardo Wurmus 41059f63df
gnu: r-epi: Update to 2.37.
* gnu/packages/cran.scm (r-epi): Update to 2.37.
2019-05-28 23:55:33 +02:00
Ricardo Wurmus 9a749cad19
gnu: r-etm: Update to 1.0.5.
* gnu/packages/cran.scm (r-etm): Update to 1.0.5.
2019-05-28 23:55:27 +02:00
Ricardo Wurmus 10dbc3fc54
gnu: r-cmprsk: Update to 2.2-8.
* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-8.
2019-05-28 23:55:21 +02:00
Ricardo Wurmus fa10f0d330
gnu: r-ks: Update to 1.11.5.
* gnu/packages/cran.scm (r-ks): Update to 1.11.5.
2019-05-28 23:55:14 +02:00
Ricardo Wurmus 1d7bde781f
gnu: r-bayesplot: Update to 1.7.0.
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.0.
[propagated-inputs]: Add r-glue, r-tibble, and r-tidyselect.
2019-05-28 23:54:53 +02:00
Ricardo Wurmus 27abdb11ae
gnu: r-refgenome: Update to 1.7.7.
* gnu/packages/cran.scm (r-refgenome): Update to 1.7.7.
2019-05-28 23:54:46 +02:00
Ricardo Wurmus 794c9e7d96
gnu: r-snakecase: Update to 0.11.0.
* gnu/packages/cran.scm (r-snakecase): Update to 0.11.0.
2019-05-28 23:54:40 +02:00
Ricardo Wurmus 9dd351233b
gnu: r-openxlsx: Update to 4.1.0.1.
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.1.
2019-05-28 23:54:36 +02:00
Ricardo Wurmus d328379d62
gnu: r-pillar: Update to 1.4.1.
* gnu/packages/cran.scm (r-pillar): Update to 1.4.1.
2019-05-28 23:54:32 +02:00
Ricardo Wurmus 130314d8fa
gnu: r-tsp: Update to 1.1-7.
* gnu/packages/cran.scm (r-tsp): Update to 1.1-7.
2019-05-28 23:54:26 +02:00
Ricardo Wurmus 6d3cfb88ea
gnu: r-jomo: Update to 2.6-8.
* gnu/packages/cran.scm (r-jomo): Update to 2.6-8.
2019-05-28 23:54:18 +02:00
Ricardo Wurmus beb82eb9d0
gnu: r-ksamples: Update to 1.2-9.
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-9.
2019-05-28 23:54:12 +02:00
Ricardo Wurmus 6edf0fb3db
gnu: r-lpsolve: Update to 5.6.13.1.
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.13.1.
2019-05-28 23:54:07 +02:00
Ricardo Wurmus 14532452b8
gnu: r-car: Update to 3.0-3.
* gnu/packages/statistics.scm (r-car): Update to 3.0-3.
2019-05-28 23:54:00 +02:00
Ricardo Wurmus 341643c6e1
gnu: r-fpc: Update to 2.2-1.
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-1.
[propagated-inputs]: Remove r-trimcluster.
2019-05-28 23:53:43 +02:00
Ricardo Wurmus f95690ceae
gnu: r-prabclus: Update to 2.2-7.1.
* gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.1.
2019-05-28 23:53:33 +02:00
Ricardo Wurmus 1498b5a2a4
gnu: r-zoo: Update to 1.8-6.
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-6.
2019-05-28 23:53:28 +02:00
Ricardo Wurmus 3fca3fa1bc
gnu: r-rmarkdown: Update to 1.13.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.13.
[propagated-inputs]: Add r-xfun.
2019-05-28 23:53:15 +02:00
Ricardo Wurmus 923c6ac139
gnu: r-evaluate: Update to 0.14.
* gnu/packages/statistics.scm (r-evaluate): Update to 0.14.
2019-05-28 23:53:02 +02:00
h.nasajpour 67458e209d
gnu: python-attrs: Update to 19.1.0.
* gnu/packages/python-xyz.scm (python-attrs): Update to 19.1.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-28 21:48:10 +02:00
h.nasajpour 205eb40e5b
gnu: python-flask: Update to 1.0.3.
* gnu/packages/python-web.scm (python-flask): Update to 1.0.3.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-28 21:18:24 +02:00
Pierre Neidhardt 458e92215f
gnu: d-feet: Fix missing input and update to 0.3.14.
* gnu/packages/gnome.scm (d-feet): Update to 0.3.14.
[inputs]: Add hicolor-icon-theme since d-feet won't list anything without it.
2019-05-28 14:53:02 +02:00
Ludovic Courtès e7f078c337
gnu: guix: Update to 35d1354.
* gnu/packages/package-management.scm (guix): Update to 35d1354.
2019-05-28 09:51:12 +02:00
Nicolas Goaziou 70fa77d881
gnu: emacs-relint: Update to 1.8.
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.8.
2019-05-27 23:22:34 +02:00
Nicolas Goaziou d8d896c5b5
gnu: emacs-xr: Update to 1.12.
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.12.
2019-05-27 23:22:19 +02:00
Ludovic Courtès 2e5c71b2a2
gnu: guix: Add dependency on lzlib.
* gnu/packages/package-management.scm (guix)[inputs]: Add LZLIB.
2019-05-27 22:47:24 +02:00
Ricardo Wurmus 8916034a34
gnu: r-shiny: Fix JavaScript minification.
Fixes <https://bugs.gnu.org/35923>.

* gnu/packages/cran.scm (r-shiny)[native-inputs]: Add uglify-js.
2019-05-27 22:09:22 +02:00
Guillaume LE VAILLANT ed72a133db
gnu: Add osmctools
* gnu/packages/geo.scm (osmctools): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-05-27 14:32:13 -04:00
Alex Griffin 521d736ae9
gnu: go@1.4: Update to 1.4-bootstrap-20171003.
* gnu/packages/golang.scm (go-1.4): Use the bootstrap branch that is
still supported upstream.
[version]: Update to 1.4-bootstrap-20171003.
[arguments]: Remove obsolete fix for timezone test which is now included
upstream.  Don't manually disable cgo because it is disabled by default.
Manually enable test suite because future releases will disable tests by
default.

Signed-off-by: Leo Famulari <leo@famulari.name>
2019-05-27 14:26:46 -04:00
Danny Milosavljevic 8d1647b228
gnu: python-alembic: Update to 1.0.10.
* gnu/packages/databases.scm (python-alembic): Update to 1.0.10.
2019-05-27 18:16:25 +02:00
Stefan Stefanović cf342a8598
gnu: tlp: Add required x86-energy-perf-policy input dependency.
* gnu/packages/linux.scm (tlp)
[inputs]: Add system specific x86-energy-perf-policy dependency.
[arguments]<#:phases>['wrap]:
Adjust bin-directory procedure to return #f on missing input,
a guard against system specific input dependencies.
Filter only strings in the path list. Reformat for-each block.
Add x86-energy-perf-policy in bin-directory input-name list.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-05-27 16:41:12 +02:00
Stefan Stefanović 71bd55cb2a
gnu: Add x86-energy-perf-policy.
* gnu/packages/linux.scm (x86-energy-perf-policy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-27 16:35:09 +02:00
guy fleury iteriteka 66fca5041b
gnu: MATE: Use mirror://mate/ in source URIs.
* gnu/packages/mate.scm(MATE packages)[source](uri): Use "mirror://mate/"
  instead of "https://pub.mate-desktop.org/releases/" directly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-27 12:02:27 +02:00
Alex Vong 45bdb66251
gnu: you-get: Update to 0.4.1302.
* gnu/packages/video.scm (you-get): Update to 0.4.1302.
2019-05-27 02:28:26 +08:00
Mark H Weaver 5ea87197f6
gnu: linux-libre: Update to 5.1.5.
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.5.
(%linux-libre-hash): Update hash.
2019-05-26 14:19:40 -04:00
Mark H Weaver 5b7be798b2
gnu: linux-libre@4.19: Update to 4.19.46.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.46.
(%linux-libre-4.19-hash): Update hash.
2019-05-26 14:19:38 -04:00
Mark H Weaver d87d375b64
gnu: linux-libre@4.14: Update to 4.14.122.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.122.
(%linux-libre-4.14-hash): Update hash.
2019-05-26 14:19:35 -04:00
Mark H Weaver 5f3f63e5ad
gnu: linux-libre@4.9: Update to 4.9.179.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.179.
2019-05-26 14:19:33 -04:00
Mark H Weaver 2bdce7a654
gnu: linux-libre: Rename a patch.
* gnu/packages/linux.scm (%linux-libre-arm-export-__sync_icache_dcache-patch):
Remove the version from the file name, since it applies to multiple versions.
2019-05-26 14:19:04 -04:00
Mark H Weaver 403b3a8c61
gnu: linux-libre-arm-generic: Move definition.
* gnu/packages/linux.scm (linux-libre-arm-generic): Move the definition down,
next to the other linux-libre-arm-generic-* packages.
2019-05-26 14:19:00 -04:00
Mark H Weaver efbbf9a15c
gnu: vhba-module: Remove duplicate definition.
This is a followup to commit e1f640db8f.

* gnu/packages/linux.scm (vhba-module): Remove duplicate definition.
2019-05-26 14:18:55 -04:00
Marius Bakke 7024846181
gnu: node: Update to 10.15.3.
* gnu/packages/libevent.scm (libuv-1.19): Remove variable.
* gnu/packages/node.scm (node): Update to 10.15.3.
[source]: Use XZ-compressed tarball.
[arguments]: Add #:test-target.  Use DELETE-FILE instead of DELETE-IF-EXISTS.
Remove obsolete test deletions.
[inputs]: Change OPENSSL to OPENSSL-NEXT.  Change LIBUV-1.19 to LIBUV.
(node-lts): Remove variable.
2019-05-26 19:48:39 +02:00
Marius Bakke 0d3dbe3f56
gnu: libevent: Update to 2.1.0.
* gnu/packages/patches/libevent-2.1-dns-tests.patch,
gnu/packages/patches/libevent-2.1-skip-failing-test.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/libevent.scm (libevent): Update to 2.1.10.
[source](patches): Remove.
2019-05-26 19:48:39 +02:00
Alex Vong 304fb7000a
gnu: youtube-dl: Update to 2019.05.20.
* gnu/packages/video.scm (youtube-dl): Update to 2019.05.20.

Signed-off-by: Alex Vong <alexvong1995@gmail.com>
2019-05-27 01:34:09 +08:00
Efraim Flashner 51daf2f553
gnu: ioquake: Build on all architectures.
* gnu/packages/game-development.scm (ioquake)[supported-systems]: Remove
field.
2019-05-26 20:22:36 +03:00
Ricardo Wurmus 164cb4da63
gnu: pigx-chipseq: Update to 0.0.41.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.41.
2019-05-26 10:56:52 +02:00
Brett Gilio 6d94465b4e
gnu: python-shapely: Update to 1.6.4.post2.
* gnu/packages/python-xyz.scm (python-shapely): Update to 1.6.4.post2.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-05-26 10:22:05 +02:00
Brett Gilio 7abf3cbf71
gnu: python-psutil: Update to 5.6.2.
* gnu/packages/python-xyz.scm (python-psutil): Update to 5.6.2.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-05-26 10:22:05 +02:00
Dan Frumin 414f545ee6
gnu: coq-equations: Update to 1.2.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-05-26 10:22:05 +02:00
Rutger Helling 9c11ba9282
gnu: mgba: Update to 0.7.2.
* gnu/packages/emulators.scm (mgba): Update to 0.7.2.
2019-05-26 10:15:21 +02:00
Rutger Helling d21c68ac46
gnu: kitty: Update to 0.14.0.
* gnu/packages/terminals.scm (kitty): Update to 0.14.0.
2019-05-26 10:15:21 +02:00
Tobias Geerinckx-Rice ac12a01394
gnu: wine-staging: Update to 4.9.
* gnu/packages/wine.scm (wine-staging-patchset-data, wine-staging):
Update to 4.9.
2019-05-26 05:22:51 +02:00
Tobias Geerinckx-Rice 5daafe0b5d
gnu: rxcpp: Don't use unstable tarball.
* gnu/packages/machine-learning.scm (rxcpp)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-05-26 05:00:50 +02:00
Tobias Geerinckx-Rice e91a0bff01
gnu: rxcpp: Update to 4.1.0.
* gnu/packages/machine-learning.scm (rxcpp): Update to 4.1.0.
2019-05-26 05:00:50 +02:00
Tobias Geerinckx-Rice f3addff21c
gnu: libelf: Use archived home page and mirrored source.
* gnu/packages/elf.scm (libelf)[source]: Use mirror URLs.
[home-page]: Use archived home page.
2019-05-26 03:27:33 +02:00
Tobias Geerinckx-Rice dbe2dfa528
gnu: pidgin: Use HTTPS home page.
* gnu/packages/messaging.scm (pidgin)[home-page]: Use HTTPS.
2019-05-26 03:27:33 +02:00
Tobias Geerinckx-Rice 569958aeb5
gnu: pidgin: Add network-manager support.
* gnu/packages/messaging.scm (pidgin)[inputs]: Add network-manager.
[arguments]: Undisable it in #:configure-flags.
2019-05-26 03:27:33 +02:00
Tobias Geerinckx-Rice 0fcb0e5076
gnu: pidgin: Update to 2.13.0.
* gnu/packages/messaging.scm (pidgin): Update to 2.13.0.
2019-05-26 03:27:33 +02:00
Tobias Geerinckx-Rice a4cf65c804
gnu: pidgin: Don't use NAME in source URI.
* gnu/packages/messaging.scm (pidgin)[source]: Hard-code NAME.
2019-05-26 03:27:33 +02:00
Tobias Geerinckx-Rice 8a8597819e
gnu: duplicity: Update to 0.7.19.
* gnu/packages/backup.scm (duplicity): Update to 0.7.19.
2019-05-26 03:27:33 +02:00
Reza Alizadeh Majd ed90104cc8
services: sddm: Fix root login failure issue.
* gnu/services/sddm.scm (sdm-pam-service): Set uid from CONFIG.
(sdm-autologin-pam-service): Set uid from CONFIG.
(sdm-pam-services): Pass CONFIG to 'sddm-pam-service' and
'sddm-autologin-pam-service'.
* doc/guix.texi (X Window): Adjust 'minimum-uid' documentation.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-05-26 01:34:16 +02:00
Arun Isaac 336674549d
services: cgit: Fix typo.
* gnu/services/cgit.scm (cgit-configuration)[root-readme]: Replace "thef" with
"the".
2019-05-25 15:58:03 +05:30
Kei Kebreau 41cdaf47e1
gnu: squirrel: Fix build.
This follows commit 9d0c291e3e.

* gnu/packages/squirrel.scm: Adjust module reference.
2019-05-25 06:08:23 -04:00
Brian Leung 7547648091
gnu: emacs-lispy: Update to 0.27.0.
* gnu/packages/emacs-xyz.scm (emacs-lispy): Update to 0.27.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-25 11:52:37 +02:00
Brian Leung c799fd63f6
gnu: emacs-avy: Update to 0.5.0.
* gnu/packages/emacs-xyz.scm (emacs-avy): Update to 0.5.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-25 11:52:37 +02:00
Brian Leung eea4ed9869
gnu: emacs-highlight-symbol: Update to 1.3.1-7a789c7.
* gnu/packages/emacs-xyz.scm (emacs-highlight-symbol): Update to 1.3.1-7a789c7.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-25 11:52:33 +02:00
Arun Isaac d2928fa63f
linux-container: Check if nscd run directory exists when container is run.
* gnu/system/linux-container.scm (containerized-operating-system):
(container-script): Check for existence of the host nscd run directory in the
container script. This check should be run when the container is started, not
when the container script is created.
[network-mappings]: Delete variable.
[nscd-run-directory, nscd-mapping]: New variables.
2019-05-25 11:06:22 +05:30
Kei Kebreau 8698d986db
gnu: supertux: Update to 0.6.0.
* gnu/packages/games.scm (supertux): Update to 0.6.0.
[source]: Add patches.
[arguments]: Add -DUSE_SYSTEM_PHYSFS=ON. Add 'patch-squirrel-path' phase.
[inputs]: Add freetype and squirrel.
* gnu/packages/patches/supertux-fix-build-with-gcc5.patch,
gnu/packages/patches/supertux-unbundle-squirrel.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-05-24 21:00:15 -04:00
Kei Kebreau 608d148c50
gnu: squirrel: Install headers and documentation.
* gnu/packages/squirrel.scm (squirrel)[arguments]: Disable building static
libraries. Add 'install-documentation' and 'install-headers' phases.
[native-inputs]: Add python-sphinx.
2019-05-24 21:00:15 -04:00
Kei Kebreau 03b630686f
gnu: squirrel: Build from a source archive instead of a Git checkout.
* gnu/packages/squirrel.scm (squirrel)[source]: Use url-fetch and adjust the
source URL accordingly.
2019-05-24 21:00:15 -04:00
Marius Bakke dbe533292b
gnu: help2man: Update to 1.47.10.
* gnu/packages/man.scm (help2man/latest): Update to 1.47.10.
2019-05-24 21:54:32 +02:00
Marius Bakke ceb1936aa4
gnu: python-markdown: Update to 3.1.1.
* gnu/packages/python-xyz.scm (python-markdown): Update to 3.1.1.
2019-05-24 21:54:32 +02:00
Marius Bakke 0cb9bacbfa
gnu: perl: Update home page.
* gnu/packages/perl.scm (perl)[home-page]: Use HTTPS.
2019-05-24 21:54:32 +02:00
Marius Bakke 6eceb2d445
gnu: Add python-sphinxcontrib-qthelp.
* gnu/packages/sphinx.scm (python-sphinxcontrib-qthelp): New public variable.
2019-05-24 21:54:32 +02:00
Marius Bakke 72f278a0ff
gnu: Add python-sphinxcontrib-htmlhelp.
* gnu/packages/sphinx.scm (python-sphinxcontrib-htmlhelp): New public variable.
2019-05-24 21:54:32 +02:00
Marius Bakke 67be8943c3
gnu: Add python-sphinxcontrib-jsmath.
* gnu/packages/sphinx.scm (python-sphinxcontrib-jsmath): New public variable.
2019-05-24 21:54:31 +02:00
Marius Bakke 62ad0c8b0f
gnu: Add python-sphinxcontrib-devhelp.
* gnu/packages/sphinx.scm (python-sphinxcontrib-devhelp): New public variable.
2019-05-24 21:54:31 +02:00
Marius Bakke bc2a3f7c62
gnu: Add python-sphinxcontrib-applehelp.
* gnu/packages/sphinx.scm (python-sphinxcontrib-applehelp): New public variable.
2019-05-24 21:54:31 +02:00
Marius Bakke c5c55a9f2c
gnu: Add python-sphinxcontrib-serializinghtml.
* gnu/packages/sphinx.scm (python-sphinxcontrib-serializinghtml): New public
variable.
2019-05-24 21:54:31 +02:00
Marius Bakke 9d0c291e3e
gnu: Move Sphinx and friends to (gnu packages sphinx).
* gnu/packages/python-xyz.scm (python-sphinxcontrib-websupport,
python2-sphinxcontrib-websupport, python-sphinx, python2-sphinx,
python-sphinx-gallery, python2-sphinx-gallery, python-sphinx-rtd-theme,
python2-sphinx-rtd-theme, python-guzzle-sphinx-theme,
python2-guzzle-sphinx-theme, python-sphinxcontrib-newsfeed,
python-sphinxcontrib-programoutput, python2-sphinxcontrib-programoutput,
python-sphinx-repoze-interface, python2-sphinx-repoze-interface,
python-sphinx-cloud-sptheme, python2-sphinx-cloud-sptheme,
python-sphinx-alabaster-theme, python2-sphinx-alabaster-theme,
python-sphinx-me, python-sphinxcontrib-svg2pdfconverter): Move to ...
(gnu):
* gnu/packages/sphinx.scm: ... here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu/packages/admin.scm, gnu/packages/bioinformatics.scm,
gnu/packages/calendar.scm, gnu/packages/cluster.scm,
gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/disk.scm,
gnu/packages/django.scm, gnu/packages/elf.scm, gnu/packages/emacs-xyz.scm,
gnu/packages/emulators.scm, gnu/packages/finance.scm, gnu/packages/image.scm,
gnu/packages/libffi.scm, gnu/packages/mail.scm, gnu/packages/mpd.scm,
gnu/packages/openstack.scm, gnu/packages/pdf.scm, gnu/packages/python-web.scm,
gnu/packages/search.scm, gnu/packages/statistics.scm,
gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm,
gnu/packages/tls.scm, gnu/packages/web.scm: Adjust module imports.
2019-05-24 21:54:31 +02:00
Marius Bakke a52c807a39
gnu: postgresql: Replace with 10.8 [security fixes].
This fixes CVE-2019-10129 and CVE-2019-10130.

* gnu/packages/databases.scm (postgresql)[replacement]: New field.
(postgresql-10.8): New variable.
2019-05-24 21:54:30 +02:00
Dan Frumin 66fbffde1f
gnu: Add coq-stdpp.
* gnu/packages/coq.scm (coq-stdpp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-24 18:24:16 +02:00
Reza Alizadeh Majd 8f5371d083
gnu: lxqt-panel: fix taskbar plugin's application list issue.
* gnu/packages/lxqt.scm (lxqt-panel): move `kwindowsystem` from `inputs`
to `propagated-inputs`

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-24 18:24:16 +02:00
Reza Alizadeh Majd 42f3eb2e7f
gnu: lxqt-session: fix lxqt-rc.xml permission issue
* gnu/packages/lxqt.scm (lxqt-session): add write permission to
lxqt-rc.xml file after initial copy to user directory

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-24 18:24:16 +02:00
Andy Tai 43675ac77a
gnu: Add libjit.
* gnu/packages/assembly.scm (libjit): Add at 0.1.4

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-05-24 18:24:16 +02:00
Ludovic Courtès fc289fb21b
gnu: guile-next: Update to 2.9.2.
* gnu/packages/guile.scm (guile-next): Update to 2.9.2.
2019-05-24 18:24:16 +02:00
Jakob L. Kreuze fc16bbb7aa
gnu: Add chocolate-doom.
* gnu/packages/games.scm (chocolate-doom): New variables.
2019-05-24 10:49:49 -04:00
Rutger Helling b019965cc5
gnu: gajim-omemo: Update to 2.6.29.
* gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.29.
2019-05-24 08:14:44 +02:00
Tobias Geerinckx-Rice e26d628b0f
gnu: parallel: Update to 20190522.
* gnu/packages/parallel.scm (parallel): Update to 20190522.
2019-05-23 22:07:48 +02:00
Efraim Flashner 234999497d
gnu: wgetpaste: Remove dead paste site.
* gnu/packages/wget.scm (wgetpaste)[arguments]: Add custom phase to
remove newly defunct paste site.
2019-05-23 20:58:47 +03:00
Pierre Neidhardt e4ff9dffe7
gnu: Add ioquake3.
* gnu/packages/game-development.scm (ioquake3): New variable.
2019-05-23 18:55:21 +02:00
Marius Bakke cee9b0566d
gnu: strace: Update to 5.1.
* gnu/packages/linux.scm (strace): Update to 5.1.
2019-05-23 17:49:06 +02:00
Marius Bakke 3d3c07f3ee
gnu: notmuch: Update to 0.28.4.
* gnu/packages/mail.scm (notmuch): Update to 0.28.4.
[native-inputs]: Change PYTHON-2 and PYTHON2-DOCUTILS to PYTHON and
PYTHON-DOCUTILS.
2019-05-23 17:49:06 +02:00
Nicolas Goaziou f41378b797
gnu: silkaj: Update to 0.7.0.
* gnu/packages/finance.scm (silkaj): Update to 0.7.0.
[inputs]: Add python-texttable.
2019-05-23 16:52:55 +02:00
Nicolas Goaziou 3425fbc69f
gnu: flare-game: Update to 1.10.
* gnu/packages/games.scm (flare-game): Update to 1.10.
2019-05-23 16:46:45 +02:00
Nicolas Goaziou 729f0ccbb5
gnu: flare-engine: Update to 1.10.
* gnu/packages/games.scm (flare-engine): Update to 1.10.
2019-05-23 16:46:32 +02:00
Ricardo Wurmus a9150d4c23
gnu: salmon: Update to 0.13.1.
* gnu/packages/bioinformatics.scm (salmon): Update to 0.13.1.
[arguments]: Adjust "do-not-look-for-boost" build phase; adjust
"prepare-rapmap" phase; adjust "use-system-libraries" phase.
[inputs]: Remove bwa, jellyfish, spdlog-for-salmon.
[native-inputs]: Add pkg-config.
(spdlog-for-salmon, bwa-for-salmon): Remove variables.
2019-05-23 16:32:21 +02:00
Nicolas Goaziou f918a296e8
gnu: python-duniterpy: Update to 0.54.1.
* gnu/packages/finance.scm (python-duniterpy): Update to 0.54.1.
2019-05-23 16:23:03 +02:00
Nicolas Goaziou 6406badb2a
gnu: wireshark: Update to 3.0.2.
* gnu/packages/networking.scm (wireshark): Update to 3.0.2.
2019-05-23 16:16:55 +02:00
Nicolas Goaziou 0f3794fb7c
gnu: keepassxc: Update to 2.4.1.
* gnu/packages/password-utils.scm (keepassxc): Update to 2.4.1.
[arguments]: Disable update checking.
[inputs]: Add qrencode and qtsvg.
2019-05-23 14:53:36 +02:00
Andy Tai 39d655f8cf
gnu: Add squirrel.
* gnu/packages/squirrel.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-05-22 21:36:45 -04:00
Vagrant Cascadian f8df47633c
gnu: git-daemon-service-type: Fix typo "repositories".
* gnu/services/version-control (git-daemon-service-type)[description]: Fix typo.
2019-05-22 18:30:10 -07:00
Vagrant Cascadian f3a2c29750
gnu: darkstat-service-type: Fix typo "statistics".
* gnu/services/monitoring (darkstat-service-type)[description]: Fix typo.
2019-05-22 18:30:08 -07:00
Vagrant Cascadian dcdafc6e18
gnu: xf86-input-joystick: Fix typo "control".
* gnu/packages/xorg (xf86-input-joystick)[description]: Fix typo.
2019-05-22 18:30:05 -07:00
Vagrant Cascadian c284dffcbe
gnu: renderproto: Fix typo "protocol".
* gnu/packages/xorg (renderproto)[description]: Fix typo.
2019-05-22 18:30:03 -07:00
Vagrant Cascadian 168d5634a6
gnu: xautomation: Fix typo "programs".
* gnu/packages/xdisorg (xautomation)[description]: Fix typo.
2019-05-22 18:30:00 -07:00
Vagrant Cascadian 4ba51e22c7
gnu: nghttp2: Fix typo "compatibility".
* gnu/packages/web (nghttp2)[description]: Fix typo.
2019-05-22 18:29:58 -07:00
Vagrant Cascadian 1bb5085694
gnu: python-internetarchive: Fix typo "programmatic".
* gnu/packages/web (python-internetarchive)[description]: Fix typo.
2019-05-22 18:29:55 -07:00
Vagrant Cascadian e54af3225d
gnu: ruby-markaby: Fix typo "Embedded".
* gnu/packages/ruby (ruby-markaby)[description]: Fix typo.
2019-05-22 18:29:52 -07:00
Vagrant Cascadian 50fceab07e
gnu: python-honcho: Fix typo "several".
* gnu/packages/python-xyz (python-honcho)[description]: Fix typo.
2019-05-22 18:29:50 -07:00
Vagrant Cascadian 7cc9ef9c20
gnu: perl-text-csv-xs: Fix typo "Routines".
* gnu/packages/perl (perl-text-csv-xs)[synopsis]: Fix typo.
2019-05-22 18:29:47 -07:00
Vagrant Cascadian 95480b9b51
gnu: perl-moox-handlesvia: Fix typo "attribute".
* gnu/packages/perl (perl-moox-handlesvia)[description]: Fix typo.
2019-05-22 18:29:45 -07:00
Vagrant Cascadian 55f54fb921
gnu: perl-data-uniqid: Fix typo "system".
* gnu/packages/perl (perl-data-uniqid)[description]: Fix typo.
2019-05-22 18:29:43 -07:00
Vagrant Cascadian d6901d933b
gnu: pdfposter: Fix typo "multiple".
* gnu/packages/pdf (pdfposter)[description]: Fix typo.
2019-05-22 18:29:40 -07:00
Vagrant Cascadian 37c5b197bb
gnu: ocaml-compiler-libs: Fix typo "package".
* gnu/packages/ocaml (ocaml-compiler-libs)[description]: Fix typo.
2019-05-22 18:29:38 -07:00
Vagrant Cascadian 86912a67ac
gnu: ocaml-migrate-parsetree: Fix typo "converter".
* gnu/packages/ocaml (ocaml-migrate-parsetree)[synopsis]: Fix typo.
2019-05-22 18:29:36 -07:00
Vagrant Cascadian 57e69c1d2e
gnu: mumps: Fix typo "Gaussian".
* gnu/packages/maths (mumps)[description]: Fix typo.
2019-05-22 18:29:33 -07:00
Vagrant Cascadian 245289f8dd
gnu: lxqt-policykit: Fix typo "authentication".
* gnu/packages/lxqt (lxqt-policykit)[description]: Fix typo.
2019-05-22 18:29:30 -07:00
Vagrant Cascadian c42dcaa91e
gnu: ghc-persistent: Fix typo "systems".
* gnu/packages/haskell (ghc-persistent)[description]: Fix typo.
2019-05-22 18:22:09 -07:00
Vagrant Cascadian b5cfc89f2d
gnu: ghc-reflection: Fix typo "propagating".
* gnu/packages/haskell (ghc-reflection)[description]: Fix typo.
2019-05-22 18:22:03 -07:00
Vagrant Cascadian 7306eb5cf5
gnu: ghc-aeson-pretty: Fix typo "readability".
* gnu/packages/haskell-web (ghc-aeson-pretty)[description]: Fix typo.
2019-05-22 18:22:01 -07:00
Vagrant Cascadian 2ec41781d5
gnu: go-github-com-btcsuite-btcd-btcec: Fix typo "significantly".
* gnu/packages/golang (go-github-com-btcsuite-btcd-btcec)[description]: Fix
  typo.
2019-05-22 18:21:58 -07:00
Vagrant Cascadian a95b643630
gnu: go-github-com-docker-distribution: Correct grammar and spelling.
* gnu/packages/golang (go-github-com-docker-distribution)[description]:
  Correct grammar and spelling.
  [synopsis]: Correct grammar and spelling.
2019-05-22 18:21:56 -07:00
Vagrant Cascadian ae03ce0f2f
gnu: go-github-com-google-cadvisor: Fix typo "performance".
* gnu/packages/golang (go-github-com-google-cadvisor)[description]: Fix typo.
2019-05-22 18:21:54 -07:00