7d01ee66d4
gnu: Add avogadro.
...
* gnu/packages/chemistry.scm (avogadro): New variable.
* gnu/packages/patches/avogadro-boost148.patch,
gnu/packages/patches/avogadro-eigen3-update.patch,
gnu/packages/patches/avogadro-python-eigen-lib.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2018-08-25 17:05:30 -04:00
94e9d750a2
gnu: libx11: Replace with 1.6.6 [security fixes].
...
This fixes CVE-2018-14599, CVE-2018-14600, and CVE-2018-14598.
* gnu/packages/xorg.scm (libx11)[replacement]: New field.
(libx11-1.6.6): New public variable.
2018-08-25 16:32:06 +02:00
7789bf9531
gnu: dante: Disable preloading to make 'sockd' work.
...
* gnu/packages/networking.scm (dante)[arguments]: Pass '--disable-preload'
to #:configure-flags.
2018-08-25 16:40:21 +08:00
36a8d5cdf4
gnu: OpenSSH: Update to 7.8p1.
...
* gnu/packages/ssh.scm (openssh): Update to 7.8p1.
[source]: Remove 'openssh-CVE-2018-15473.patch'.
* gnu/packages/patches/openssh-CVE-2018-15473.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-24 17:04:58 -04:00
c1352b4bad
gnu: font-gnu-unifont: Update to 11.0.02.
...
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 11.0.02.
[arguments]: Adjust code to install 'unifont.info.gz' in 'install'
phase.
2018-08-24 17:54:10 +02:00
bf0bb925ea
gnu: gdb: Update to 8.1.1.
...
* gnu/packages/gdb.scm (gdb): Update to 8.1.1.
2018-08-24 17:50:52 +02:00
079cdd9c15
gnu: Add find-circ.
...
* gnu/packages/bioinformatics.scm (find-circ): New variable.
2018-08-24 11:20:19 +02:00
4a3cf8929f
gnu: r-catools: Update to 1.17.1.1.
...
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.1.
2018-08-24 04:25:50 +02:00
0e5d66abf6
gnu: keepassxc: Update to 2.3.4.
...
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.4.
[arguments]: Remove obsolete ‘patch-sources’ phase.
2018-08-24 04:25:50 +02:00
a7b14a1b39
gnu: capstone: Update to 3.0.5.
...
* gnu/packages/engineering.scm (capstone): Update to 3.0.5.
[arguments]: Set cstool's LDFLAGS in the environment instead of
SUBSTITUTE*ing the Makefile.
2018-08-24 03:04:56 +02:00
77c027b98b
gnu: r-trimcluster: Update to 0.1-2.1.
...
* gnu/packages/statistics.scm (r-trimcluster): Update to 0.1-2.1.
2018-08-24 02:30:43 +02:00
6d83cd1f9a
gnu: r-synchronicity: Update to 1.3.5.
...
* gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.5.
2018-08-24 02:30:42 +02:00
6a9a50fd2f
gnu: guile-lib: Update to 0.2.6.1.
...
* gnu/packages/guile.scm (guile-lib): Update to 0.2.6.1.
[source]: Remove obsolete snippet.
2018-08-24 02:30:42 +02:00
a0a7e42500
gnu: tuxguitar: Update to 1.5.2.
...
* gnu/packages/music.scm (tuxguitar): Update to 1.5.2.
[source]: Remove obsolete snippet.
2018-08-24 02:30:41 +02:00
38146797e6
gnu: libgig: Update to 4.1.0.
...
* gnu/packages/music.scm (libgig): Update to 4.1.0.
2018-08-24 02:30:41 +02:00
f6181921e5
gnu: denemo: Use INVOKE.
...
* gnu/packages/music.scm (denemo)[arguments]: Substitute INVOKE for
SYSTEM*.
2018-08-24 02:30:41 +02:00
fbde7b08e5
gnu: ncmpc: Update to 0.29.
...
* gnu/packages/mpd.scm (ncmpc): Update to 0.29.
[build-system]: Switch to Meson.
[arguments]: Find ncurses.h.
[native-inputs]: Add gettext.
2018-08-24 02:30:41 +02:00
0b4e5f7e5b
gnu: parallel: Update to 20180822.
...
* gnu/packages/parallel.scm (parallel): Update to 20180822.
2018-08-24 00:40:09 +02:00
444488fc1b
gnu: boost: Move 1.59.0 definition to boost.scm.
...
Fixes a regression introduced in commit
7cbf06d8c2
2018-08-24 00:36:04 +02:00
d32da49c76
gnu: r-devtools: Update to 1.13.6.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.6.
2018-08-23 23:11:52 +02:00
c95f9f09a7
gnu: drumkv1: Update to 0.9.2.
...
* gnu/packages/music.scm (drumkv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
69b4d24871
gnu: synthv1: Update to 0.9.2.
...
* gnu/packages/music.scm (synthv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
29618d6722
gnu: samplv1: Update to 0.9.2.
...
* gnu/packages/music.scm (samplv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
2c59066f6a
gnu: padthv1: Update to 0.9.2.
...
* gnu/packages/music.scm (padthv1): Update to 0.9.2.
2018-08-23 23:01:56 +02:00
9459216aa1
gnu: Update home pages for the V1 synth family.
...
* gnu/packages/music.scm (synthv1, drumkv1, samplv1, padthv1)
[home-page]: Update & use HTTPS.
2018-08-23 23:01:55 +02:00
16b0e8da48
gnu: Add r-a3.
...
gnu/packages/cran.scm (r-a3): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
881cc61c1b
gnu: Add r-manipulatewidget.
...
gnu/packages/cran.scm (r-manipulatewidget): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
87b576aa8b
gnu: Add r-slam.
...
gnu/packages/cran.scm (r-slam): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
c994418b8c
gnu: Add r-abcanalysis.
...
gnu/packages/cran.scm (r-abcanalysis): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
67cf070239
gnu: Add r-miniui.
...
gnu/packages/web.scm (r-miniui): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-23 16:26:40 -04:00
694765e1d6
gnu: qjackctl: Update to 0.5.3.
...
* gnu/packages/audio.scm (qjackctl): Update to 0.5.3.
2018-08-23 17:16:42 +02:00
97353dfb69
gnu: byobu: Update home page.
...
* gnu/packages/screen.scm (byobu)[home-page]: Update & use HTTPS.
2018-08-23 17:16:41 +02:00
9e29921162
gnu: byobu: Update to 5.127.
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* gnu/packages/screen.scm (byobu): Update to 5.127.
* gnu/packages/patches/byobu-writable-status.patch: Adjust context
accordingly.
2018-08-23 17:16:41 +02:00
f868276b8a
gnu: wine-staging-patchset-data: Don't use unstable archive.
...
* gnu/packages/wine.scm (wine-staging-patchset-data)[source]:
Use GIT-FETCH and GIT-FILE-NAME.
[native-inputs]: Remove unzip.
[arguments]: Adjust and refactor accordingly.
2018-08-23 17:16:41 +02:00
574e2ee8ea
gnu: yubico-piv-tool: Update to 1.6.1.
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* gnu/packages/security-token.scm (yubico-piv-tool): Update to 1.6.1.
2018-08-23 17:16:41 +02:00
fa5511b6e9
gnu: r-car: Update to 3.0-1.
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* gnu/packages/statistics.scm (r-car): Update to 3.0-1.
2018-08-23 17:16:40 +02:00
39bb1cc77a
gnu: r-digest: Update to 0.6.16.
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* gnu/packages/statistics.scm (r-digest): Update to 0.6.16.
2018-08-23 17:16:40 +02:00
ed61c44895
gnu: r-dplyr: Update to 0.7.6.
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* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.6.
2018-08-23 17:16:40 +02:00
51dbad04c5
gnu: r-rcpp: Update to 0.12.18.
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* gnu/packages/cran.scm (r-rcpp): Update to 0.12.18.
2018-08-23 17:16:40 +02:00
02489a6646
gnu: duplicity: Update to 0.7.18.
...
* gnu/packages/backup.scm (duplicity): Update to 0.7.18.
2018-08-23 17:16:39 +02:00
72816ebed2
gnu: darcs: Update to 2.14.1.
...
* gnu/packages/version-control.scm (darcs): Update to 2.14.1.
[arguments]: Add patch-sh phase. Enable tests.
2018-08-23 15:51:43 +05:30
d3c7e70858
gnu: ghc-zlib: Update to 0.6.2.
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* gnu/packages/haskell.scm (ghc-zlib): Update to 0.6.2.
2018-08-23 14:43:48 +05:30
cdccdec1f2
gnu: ghc-quickcheck-instances: Update to 0.3.18.
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* gnu/packages/haskell-check.scm (ghc-quickcheck-instances): Update to 0.3.18.
[arguments]: Allow building with newer base-compat.
2018-08-23 14:37:57 +05:30
f797a0e987
gnu: ghc-graphviz: Update to 2999.20.0.2.
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* gnu/packages/haskell.scm (ghc-graphviz): Update to 2999.20.0.2.
[native-inputs]: Add ghc-hspec, graphviz and hspec-discover.
2018-08-23 13:21:23 +05:30
e173a95ffa
gnu: ghc-wl-pprint-text: Update to 1.2.0.0.
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* gnu/packages/haskell.scm (ghc-wl-pprint-text): Update to 1.2.0.0.
[inputs]: Add ghc-base-compat.
2018-08-23 13:21:23 +05:30
0fa2c552fc
gnu: ghc-base-compat: Update to 0.10.4.
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* gnu/packages/haskell.scm (ghc-base-compat): Update to 0.10.4.
2018-08-23 13:21:23 +05:30
a3ab433a14
gnu: ghc-fgl-arbitrary: Allow building with newer hspec.
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* gnu/packages/haskell.scm (ghc-fgl-arbitrary)[arguments]: Allow building with
newer hspec.
2018-08-23 13:00:53 +05:30
c4348ca72c
gnu: ghc-shelly: Update to 1.8.1.
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* gnu/packages/haskell.scm (ghc-shelly): Update to 1.8.1.
[inputs]: Add ghc-hspec-contrib.
2018-08-23 12:53:47 +05:30
66dbe158cf
gnu: ghc-sandi: Update to 0.4.2.
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* gnu/packages/haskell.scm (ghc-sandi): Update to 0.4.2.
2018-08-23 12:44:00 +05:30
b1a1600030
gnu: ghc-fgl: Update to 5.6.0.0.
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* gnu/packages/haskell.scm (ghc-fgl): Update to 5.6.0.0.
[arguments]: Allow building with newer hspec.
2018-08-23 12:32:46 +05:30
4e51d3e9ae
gnu: guile-redis: Remove duplicate 'home-page' field.
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* gnu/packages/guile.scm (guile-redis): Remove duplicate 'home-page' field.
2018-08-23 02:30:30 -04:00
efe2e7506e
gnu: guile-gcrypt: Remove duplicate 'home-page' field.
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This is a followup to commit b0cb92b2d4
2018-08-23 02:29:31 -04:00
12dc04d0b4
gnu: linux-libre: Update to 4.18.4.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.4.
(%linux-libre-hash): Update hash.
2018-08-23 02:22:57 -04:00
98dfe06e3e
gnu: linux-libre@4.14: Update to 4.14.66.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.66.
(%linux-libre-4.14-hash): Update hash.
2018-08-23 02:21:28 -04:00
bb2efc0384
gnu: linux-libre@4.9: Update to 4.9.123.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.123.
2018-08-23 02:20:44 -04:00
435722f72c
gnu: linux-libre@4.4: Update to 4.4.151.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.151.
2018-08-23 02:20:00 -04:00
b0cb92b2d4
gnu: Add guile-gcrypt.
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* gnu/packages/gnupg.scm (guile-gcrypt): New variable.
2018-08-23 00:44:55 +02:00
58927996d9
gnu: perl-dbd-mysql: Update to 4.046.
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* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046.
[source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'.
* gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-22 15:40:08 -04:00
414f620fbb
gnu: python-pkgconfig: Enable tests.
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* gnu/packages/python.scm (python-pkgconfig)[arguments]: Replace 'check' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-22 15:13:52 -04:00
5fab62527c
gnu: python-pkgconfig: Update to 1.3.1.
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* gnu/packages/python.scm (python-pkgconfig): Update to 1.3.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-08-22 15:13:49 -04:00
373a9fd4db
gnu: soundtouch: Fix CVE-2018-{1000223,14044,14045}.
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* gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch,
gnu/packages/patches/soundtouch-CVE-2018-1000223.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/audio.scm (soundtouch)[source]: Use them.
2018-08-22 13:38:39 -04:00
eb88ccf711
gnu: soundtouch: Update to 2.0.0.
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* gnu/packages/audio.scm (soundtouch): Update to 2.0.0.
2018-08-22 13:38:39 -04:00
180a8986e5
gnu: ImageMagick: Update to 6.9.10-10.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-10.
2018-08-22 03:25:47 -04:00
09efe9af2d
gnu: GraphicsMagick: Update to 1.3.30.
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* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.30.
2018-08-22 03:25:46 -04:00
dc695341f7
gnu: r-fpc: Update to 2.1-11.1.
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* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.1.
2018-08-22 00:03:44 +02:00
7138c48e6e
gnu: r-survival: Update to 2.42-6.
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* gnu/packages/statistics.scm (r-survival): Update to 2.42-6.
2018-08-22 00:03:44 +02:00
311f06c94a
gnu: Add sqlcrush.
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* gnu/packages/databases.smc (sqlcrush): New public variable.
2018-08-22 00:03:43 +02:00
9763102bd7
gnu: Add python-pymysql.
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* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New
public variables.
2018-08-22 00:03:43 +02:00
f998453559
gnu: luakit: Fix crash on startup.
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* gnu/packages/web-browsers.scm (luakit): add XDG_CONFIG_DIRS to the
wrapping phase.
This fixes a crash when no configuration file is present in the user's home
directory. It allows luakit to use it's own default configuration files.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-08-21 23:27:09 +02:00
c305ac30c3
gnu: guile-ssh: Don't build libguile-ssh.a.
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* gnu/packages/ssh.scm (guile-ssh)[arguments]: Add #:configure-flags.
2018-08-21 23:27:08 +02:00
6cd2c4a83c
gnu: openssh: Don't allow remote username enumeration [fixes CVE-2018-15473].
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* gnu/packages/patches/openssh-CVE-2018-15473.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
2018-08-21 11:16:30 -04:00
2fbc38e33b
gnu: python-paramiko: Add some missing dependencies.
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* gnu/packages/python-crypto.scm (python-paramiko,
python2-paramiko)[propagated-inputs]: Add python-bcrypt and python-pynacl.
2018-08-21 11:04:47 -04:00
15e57838c6
gnu: asymptote: Use minimal texlive-union.
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* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Replace texlive with texlive-union.
2018-08-21 16:32:22 +02:00
756fc3e1ef
gnu: texlive-latex-base: Include support files.
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* gnu/packages/tex.scm (texlive-latex-base)[native-inputs]: Include support files.
2018-08-21 16:32:22 +02:00
9b02a79bb0
gnu: mit-scheme: Use minimal texlive-union.
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* gnu/packages/scheme.scm (mit-scheme)[native-inputs]: Replace texlive with texlive-union.
2018-08-21 16:30:22 +02:00
49dcfb5045
gnu: sl: Don't use unstable tarball.
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* gnu/packages/toys.scm (sl)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-08-21 07:17:06 +02:00
20b5b97381
gnu: python-rpy2: Update to 2.9.4.
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* gnu/packages/python.scm (python-rpy2): Update to 2.9.4.
[arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM*
now that we can.
2018-08-21 07:17:06 +02:00
db09a450d2
gnu: python-rpy2: Update home page.
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* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
2018-08-21 07:17:05 +02:00
93f9e0d9e9
gnu: r-iterators: Update to 1.0.10.
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* gnu/packages/statistics.scm (r-iterators): Update to 1.0.10.
2018-08-21 07:17:05 +02:00
4370881631
gnu: r-foreign: Update to 0.8-71.
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* gnu/packages/statistics.scm (r-foreign): Update to 0.8-71.
2018-08-21 07:17:05 +02:00
6d863cdedd
gnu: r-openssl: Update to 1.0.2.
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* gnu/packages/statistics.scm (r-openssl): Update to 1.0.2.
2018-08-21 03:25:42 +02:00
4481004fa4
gnu: r-modeltools: Update to 0.2-22.
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* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-22.
2018-08-21 03:25:41 +02:00
8ecf3f7ea5
gnu: mysql: Update to 5.7.23.
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* gnu/packages/databases.scm (mysql): Update to 5.7.23.
2018-08-20 20:17:20 +02:00
7cbf06d8c2
gnu: mysql: Fix build.
...
MySQL demands boost@1.59.0, and lying about it no longer works:
sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’:
sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token
catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &)
^
[...]
* gnu/packages/databases.scm (boost-for-mysql): New variable.
(mysql)[inputs]: Use that instead of the regular boost.
[arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
2018-08-20 20:17:20 +02:00
725449bd7a
gnu: python-pyodbc: Update to 4.0.24.
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* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
2018-08-20 20:17:19 +02:00
28635e5266
gnu: python-mysqlclient: Update to 1.3.13.
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* gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
2018-08-20 20:17:19 +02:00
db4e76416c
gnu: perl-dbd-sqlite: Update to 1.58.
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* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.58.
2018-08-20 20:17:19 +02:00
9c112bee91
gnu: r-energy: Update to 1.7-5.
...
* gnu/packages/cran.scm (r-energy): Update to 1.7-5.
2018-08-20 20:17:19 +02:00
8b0701d97a
gnu: r-tinytex: Update to 0.6.
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* gnu/packages/cran.scm (r-tinytex): Update to 0.6.
[propagated-inputs]: Add r-xfun.
2018-08-20 20:17:18 +02:00
2045af8035
gnu: r-xfun: Update to 0.3.
...
* gnu/packages/cran.scm (r-xfun): Update to 0.3.
2018-08-20 20:17:18 +02:00
9b77f724c0
gnu: r-jomo: Update to 2.6-3.
...
* gnu/packages/cran.scm (r-jomo): Update to 2.6-3.
2018-08-20 20:17:18 +02:00
cd4abb6d4a
gnu: r-trend: Update to 1.1.1.
...
* gnu/packages/cran.scm (r-trend): Update to 1.1.1.
2018-08-20 20:17:18 +02:00
dc98bbcad4
gnu: r-lava: Update to 1.6.3.
...
* gnu/packages/cran.scm (r-lava): Update to 1.6.3.
2018-08-20 20:17:17 +02:00
632cefdac9
gnu: r-mitml: Update to 0.3-6.
...
* gnu/packages/cran.scm (r-mitml): Update to 0.3-6.
2018-08-20 20:17:17 +02:00
658e37b6e8
gnu: r-vgam: Update to 1.0-6.
...
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-6.
2018-08-20 20:17:17 +02:00
52773e5cf4
gnu: python-py: Use HTTPS home page.
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* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
2018-08-20 16:36:20 +02:00
c85626bb0f
gnu: xpad: Update to 5.1.0.
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* gnu/packages/gnome.scm (xpad): Update to 5.1.0.
[arguments]: Remove obsolete ‘run-autogen’ phase.
2018-08-20 16:35:55 +02:00
bc2f9dc3ce
gnu: emacs-f: Update to 0.20.0.
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* gnu/packages/emacs.scm (emacs-f): Update to 0.20.0.
2018-08-20 16:35:55 +02:00
bd0570f21d
gnu: emacs-f: Don't use unstable tarball.
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* gnu/packages/emacs.scm (emacs-f)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-08-20 16:35:55 +02:00
cb4baa4da6
gnu: gimp: Report bugs to Guix.
...
Upstream prints this when running ./configure. Take the hint.
NOTE: if you plan on packaging GIMP for distribution, it is
recommended to override the bug report URL with option:
--with-bug-report-url=https://example.com/
so that you can filter packaging bugs from core bugs before
reporting upstream.
* gnu/packages/gimp.scm (gimp)[arguments]: Customise bug report URI.
2018-08-20 16:35:54 +02:00
Kei Kebreau