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44313 Commits

Author SHA1 Message Date
Ricardo Wurmus 524c71889b
gnu: r-vegan: Update to 2.5-5. 
* gnu/packages/cran.scm (r-vegan): Update to 2.5-5.
 2019-05-20 12:00:34 +02:00
Ricardo Wurmus 33ba81359c
gnu: r-pillar: Update to 1.4.0. 
* gnu/packages/cran.scm (r-pillar): Update to 1.4.0.
[propagated-inputs]: Add r-vctrs.
 2019-05-20 12:00:34 +02:00
Ricardo Wurmus 6004bc1a8f
gnu: Add r-vctrs. 
* gnu/packages/cran.scm (r-vctrs): New variable.
 2019-05-20 12:00:34 +02:00
Ricardo Wurmus c87a335860
gnu: Add r-zeallot. 
* gnu/packages/cran.scm (r-zeallot): New variable.
 2019-05-20 12:00:34 +02:00
Ricardo Wurmus 154c2b0bc5
gnu: r-tinytex: Update to 0.13. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.13.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus 5da9918ded
gnu: r-heatmaply: Update to 0.16.0. 
* gnu/packages/cran.scm (r-heatmaply): Update to 0.16.0.
[propagated-inputs]: Remove r-gplots and r-knitr.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus 40b2f7bc0e
gnu: r-xcms: Update to 3.6.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.1.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus b9a7f9c065
gnu: r-sn: Update to 1.5-4. 
* gnu/packages/statistics.scm (r-sn): Update to 1.5-4.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus b02a960275
gnu: r-robustbase: Update to 0.93-5. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-5.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus 89428ef7fb
gnu: r-ggthemes: Update to 4.2.0. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.2.0.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus b1b9212d1a
gnu: r-hexbin: Update to 1.27.3. 
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.3.
 2019-05-20 12:00:33 +02:00
Ricardo Wurmus c5f6d1798c
gnu: r-segmented: Update to 0.5-4.0. 
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-4.0.
 2019-05-20 12:00:32 +02:00
Ricardo Wurmus 179a477cd7
gnu: r-rcpparmadillo: Update to 0.9.400.3.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.400.3.0.
 2019-05-20 12:00:32 +02:00
Ricardo Wurmus 7762b5825f
gnu: r-batchjobs: Update to 1.8. 
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.8.
 2019-05-20 12:00:32 +02:00
Ricardo Wurmus 9a6da53fc7
gnu: r-dplyr: Update to 0.8.1. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.1.
 2019-05-20 12:00:32 +02:00
Ricardo Wurmus bf5320aaf5
gnu: r-nlme: Update to 3.1-140. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-140.
 2019-05-20 12:00:32 +02:00
Ricardo Wurmus ee7e2ebf61
gnu: r-svglite: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.2.
[native-inputs]: Move r-rcpp from here...
[propagated-inputs]: ...to here.
 2019-05-20 12:00:28 +02:00
Ludovic Courtès 996ecaf64e
maint: update-NEWS: Track "gcc-toolchain", not "gcc". 
This is a followup to d78010b81e.

* build-aux/update-NEWS.scm (write-packages-updates)[important]: Replace
"gcc" by "gcc-toolchain".
 2019-05-20 11:50:21 +02:00
Ludovic Courtès 99f47b53f7
Merge branch 'version-1.0.1' 2019-05-20 11:48:57 +02:00
Pierre Neidhardt 8d036f3ecf
gnu: youtube-dl: Update to 2019.05.11. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.05.11.
 2019-05-20 11:15:50 +02:00
Pierre Neidhardt 6e0c5fec83
gnu: emacs-evil-collection: Update to 20190519. 
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20190519.
 2019-05-20 11:14:33 +02:00
Tobias Geerinckx-Rice 0f469c172e
gnu: xf86-video-voodoo: Ship patch locally. 
The ORIGIN patch has been modified in place, probably *wild guessing
sounds* by a server-side cgit update.

* gnu/packages/xorg.scm (xf86-video-voodoo)[source]: Use SEARCH-PATCHES.
* gnu/packages/patches/xf86-video-voodoo-pcitag.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-05-20 05:02:26 +02:00
Tobias Geerinckx-Rice 3db907f000
gnu: emacs-idris-mode: Update source hash. 
The source tarball was modified in place.  Only file metadata —
specifically: time stamps — differ.

* gnu/packages/emacs-xyz.scm (emacs-idris-mode)[source]: Update sha256.
 2019-05-20 04:45:42 +02:00
Tobias Geerinckx-Rice ff281acce2
gnu: texlive-latex-acmart: Update to 1.60. 
Forced by source hash change.

* gnu/packages/tex.scm (texlive-latex-acmart): Update to 1.60.
 2019-05-20 04:45:42 +02:00
Tobias Geerinckx-Rice b8ae2e9e21
gnu: libu2f-host: Update to 1.1.10. 
* gnu/packages/security-token.scm (libu2f-host): Update to 1.1.10.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice 813bb1a1da
gnu: s6: Update to 2.8.0.1. 
* gnu/packages/skarnet.scm (s6): Update to 2.8.0.1.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice 8afab7ed31
gnu: skalibs: Update to 2.8.1.0. 
* gnu/packages/skarnet.scm (skalibs): Update to 2.8.1.0.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice 873ef5b116
gnu: stunnel: Update to 5.54. 
* gnu/packages/web.scm (stunnel): Update to 5.54.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice 5cb92d7ed5
gnu: tumbler: Don't use NAME in source URI. 
* gnu/packages/xfce.scm (tumbler)[source]: Hard-code NAME.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice e7532c2db8
gnu: tumbler: Update to 0.2.4. 
* gnu/packages/xfce.scm (tumbler): Update to 0.2.4.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice 08f5f6e821
gnu: garcon: Don't use NAME in source URI. 
* gnu/packages/xfce.scm (garcon)[source]: Hard-code NAME.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice 7275e56c06
gnu: thunar: Don't use NAME in source URI. 
* gnu/packages/xfce.scm (thunar)[source]: Hard-code NAME.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice 1438306bd5
gnu: exo: Don't use NAME in source URI. 
* gnu/packages/xfce.scm (exo)[source]: Hard-code NAME.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice 5da54e8004
gnu: thunar: Update to 1.8.6. 
* gnu/packages/xfce.scm (thunar): Update to 1.8.6.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice 89d7bb866f
gnu: exo: Update to 0.12.5. 
* gnu/packages/xfce.scm (exo): Update to 0.12.5.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice dd5fbf613a
gnu: restic: Update to 0.9.5. 
* gnu/packages/backup.scm (restic): Update to 0.9.5.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice 558d36e6bf
gnu: wimlib: Update to 1.13.1. 
* gnu/packages/backup.scm (wimlib): Update to 1.13.1.
 2019-05-20 04:16:05 +02:00
Tobias Geerinckx-Rice b313665fa0
gnu: Add tpacpi-bat. 
* gnu/packages/linux.scm (tpacpi-bat): New public variable.
 2019-05-20 01:49:34 +02:00
Tobias Geerinckx-Rice 7bf28446a5
gnu: Add acpi-call-linux-module. 
* gnu/packages/linux.scm (acpi-call-linux-module): New public variable.
 2019-05-20 01:49:34 +02:00
Tobias Geerinckx-Rice e1f640db8f
gnu: Move Linux-Libre modules to their own section. 
* gnu/packages/linux.scm (vhba-module): Move to its own section.
 2019-05-20 01:49:34 +02:00
Tobias Geerinckx-Rice 9956812237
gnu: openconnect: Update to 8.03. 
* gnu/packages/vpn.scm (openconnect): Update to 8.03.
 2019-05-20 01:49:34 +02:00
Ludovic Courtès fb2abbd6f5
gnu: guix: Update to 8204295. 2019-05-19 16:01:47 +02:00
Nicolas Goaziou f5557bde1c
gnu: toutenclic: Update to 7.00. 
* gnu/packages/education.scm (toutenclic): Update to 7.00.
[arguments]: Rename executable from "toutenclic.py" to "toutenclic".
 2019-05-19 14:44:22 +02:00
Ludovic Courtès 820429517f
gnu: guix: Update to 1.0.1. 2019-05-19 12:25:54 +02:00
Ludovic Courtès d68de958b6
installer: Fix Guile-Parted crash on i686. 
Fixes <https://bugs.gnu.org/35783>.
This is a followup to 7d567af46b.

* gnu/installer/parted.scm (auto-partition!): Append ESP-PARTITION, when
it is true, to the result of 'create-adjacent-partitions!'.
* gnu/installer/newt/partition.scm (run-partioning-page): Remove
'initial-partitions' variable, and remove call to
'create-special-user-partitions'.

Co-authored-by: Mathieu Othacehe <m.othacehe@gmail.com>
 2019-05-19 11:58:36 +02:00
Danny Milosavljevic 1d86b05618
vm: Create installation media with MBR and HFS only, no GPT. 
* gnu/build/vm.scm (make-iso9660-image): Accept XORRISO,
GRUB-MKRESCUE-ENVIRONMENT.
* gnu/system/vm.scm (iso9660-image): Pass XORRISO; accept
GRUB-MKRESCUE-ENVIRONMENT.
(system-disk-image): Pass GRUB-MKRESCUE-ENVIRONMENT.
* gnu/packages/patches/xorriso-no-mbr-in-inner-efi.patch: New file.
* gnu/packages/patches/xorriso-no-partition-table-in-inner-efi.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/cdrom.scm (xorriso)[source]: Add patches.
[arguments]<#:phases>[install-frontends]:
Add phase.
 2019-05-18 18:35:37 +02:00
Ludovic Courtès baab87ac49
pack: '--localstatedir' and '-R' tests gracefully handle missing /gnu/store. 
Fixes <https://bugs.gnu.org/35776>.
Reported by Ting-Wei Lan <lantw44@gmail.com>.

* tests/guix-pack-localstatedir.sh: Set 'storedir' before
'NIX_STORE_DIR'.
* tests/guix-pack-relocatable.sh: Likewise.
 2019-05-18 12:23:31 +02:00
Ting-Wei Lan 6b97415996
gremlin: Adjust tests for foreign distros. 
Fixes <https://bugs.gnu.org/35775>.

* tests/gremlin.scm ("elf-dynamic-info-needed, executable"): Expect only
libguile and libc among NEEDED.
("strip-runpath"): Pass '--enable-new-dtags' to get RUNPATH, not RPATH.
 2019-05-18 12:10:15 +02:00
Ludovic Courtès 1b0d2b2afc
build: Add 'docker-image.tmpl' to the distribution. 
Fixes <https://bugs.gnu.org/35774>.
Reported by Ting-Wei Lan <lantw44@gmail.com>.

* Makefile.am (EXAMPLES): Add docker-image.tmpl.
 2019-05-18 12:03:11 +02:00
Leo Famulari 08eafef865
gnu: Borg: Fix a hang in the test suite. 
* gnu/packages/patches/borg-fix-hard-link-preloading.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (borg)[source]: Use it.
 2019-05-17 07:57:55 -04:00