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5669 Commits

Author SHA1 Message Date
Ludovic Courtès 23c0e74375 gnu: git: Install the Bash completion script. 
* gnu/packages/version-control.scm (git)[arguments]: Add
  'install-shell-completion' phase.
 2015-03-03 22:58:45 +01:00
Ludovic Courtès 776463ba9f http-client: Monkey-patch 'make-chunked-input-port' on Guile <= 2.0.11. 
Fixes <http://bugs.gnu.org/19976>.

* guix/http-client.scm (when-guile<=2.0.5): Rename to...
  (when-guile<=2.0.5-or-otherwise-broken): ... this.
  (%web-http): New variable.
  Monkey-patch 'make-chunked-input-port' when %WEB-HTTP defines
  'read-chunk-body'.
 2015-03-03 22:58:45 +01:00
Ludovic Courtès c28606bd1d http-client: Update backport of chunked encoding support to Guile 2.0.5. 
* guix/http-client.scm (read-chunk, read-chunk-body)
  [when-guile<=2.0.5]: Remove.
  (make-chunked-input-port) [when-guile<=2.0.5]: Update to Guile commit
  00d3ecf2.
 2015-03-03 22:58:45 +01:00
Ludovic Courtès da699774d4 gnu: Add search path specifications for 'SSL_CERT_FILE' and 'GIT_SSL_CAINFO'. 
* gnu/packages/openssl.scm (openssl)[native-search-paths]: Add
  specification for 'SSL_CERT_FILE'.
* gnu/packages/version-control.scm (git)[native-search-paths]: Add
  specification for 'GIT_SSL_CAINFO'.
 2015-03-03 21:25:39 +01:00
Mark H Weaver 41ce460133 gnu: nss-certs: Install only trusted CA certificates. 
* gnu/packages/certs.scm (nss-certs): Only install certificates that include a
  non-empty "openssl-trust=" annotation.
 2015-03-03 13:49:12 -05:00
Mark H Weaver 78ab0746a5 system: Add /etc/ssl symlink; set needed variables in /etc/profile. 
* gnu/build/activation.scm (activate-etc): Create /etc/ssl symlink.
* gnu/system.scm (etc-directory): Set SSL_CERT_DIR, SSL_CERT_FILE,
  and GIT_SSL_CAINFO in /etc/profile.

Co-Authored-By: Ludovic Courtès <ludo@gnu.org>
 2015-03-03 13:49:12 -05:00
Mark H Weaver 536c3ee4e3 profiles: Produce a single-file CA certificate bundle. 
* guix/profiles.scm (ca-certificate-bundle): New procedure.
  (profile-derivation): Add 'ca-certificate-bundle?' keyword argument.  If
  true (the default), add the result of 'ca-certificate-bundle' to 'inputs'.

Co-Authored-By: Ludovic Courtès <ludo@gnu.org>
 2015-03-03 13:49:12 -05:00
Mark H Weaver e33eea8ffd Revert "system: Add 'x509-certificates' field, and populate /etc/ssl/certs." 
This reverts commit e979e6dd52.
 2015-03-03 13:49:12 -05:00
Mark H Weaver bd4c47a47e Revert "system: Create a single-file certificate bundle in /etc/ssl/certs." 
This reverts commit 993300f6cc.
 2015-03-03 13:49:12 -05:00
Ludovic Courtès 00e650981c gnu: Add rdesktop. 
* gnu/packages/rdesktop.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-03-03 18:45:10 +01:00
Andreas Enge 2303c8216e gnu: enlightenment: Fix typo in adding the module. 
* gnu-system.am (GNU_SYSTEM_MODULES): Fix typo.
538fb23ea0
 2015-03-03 15:16:45 +01:00
Jason Self ad036bda89 gnu: vlc: Update to 2.2.0 
* gnu/packages/video.scm (vlc): Update to version 2.2.0.
 2015-03-03 05:31:59 -08:00
Jason Self 32d9109f24 gnu: libvorbis: Update to 1.3.5 
* gnu/packages/xiph.scm (libvorbis): Update to version 1.3.5.
 2015-03-03 05:15:54 -08:00
Tomáš Čech df2b053af8 gnu: Add terminology. 
* gnu/packages/enlightenment.scm (terminology): New variable.
 2015-03-03 13:04:37 +01:00
Tomáš Čech cfa0468317 gnu: Add emotion-generic-players 
* gnu/packages/enlightenment.scm (emotion-generic-players): New variable.
 2015-03-03 13:04:37 +01:00
Tomáš Čech 87a37fdf72 gnu: Add evas-generic-loaders 
* gnu/packages/enlightenment.scm (evas-generic-loaders): New variable.
 2015-03-03 13:04:37 +01:00
Tomáš Čech 146ee5cd28 gnu: Add elementary. 
* gnu/packages/enlightenment.scm (elementary): New variable.
 2015-03-03 13:04:37 +01:00
Tomáš Čech 538fb23ea0 gnu: Add efl. 
* gnu/packages/enlightenment.scm: New file
* gnu/packages/enlightenment.scm (efl): New variable.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-03-03 13:04:37 +01:00
Ricardo Wurmus 92cb152b37 gnu: Add snakemake. 
* gnu/packages/python.scm (snakemake): New variable.
 2015-03-03 10:22:23 +01:00
Mark H Weaver bbd0ea77ef gnu: libuv: Update to 1.4.2. 
* gnu/packages/libevent.scm (libuv): Update to 1.4.2.  Update source URI.
  Add 'file-name' field to origin.  Move 'autogen' phase after 'unpack'.
  Run "sh autogen.sh" instead of "./autogen.sh".
 2015-03-02 20:35:32 -05:00
Mark H Weaver 2ecebec142 gnu: skribilo: Adapt to recently renamed 'guile-reader' variable. 
This is a followup to commit d6d9f1f715.

* gnu/packages/skribilo.scm (skribilo)[propagated-inputs]: Change
  'guile-reader/guile-2.0' --> 'guile-reader'.
 2015-03-02 19:53:42 -05:00
Paul van der Walt 136770c9c7 gnu: Add girara. 
* gnu/packages/gtk.scm (girara): Add variable.
 2015-03-02 23:37:36 +01:00
Paul van der Walt 4ac696c68b gnu: check: Update version to 0.9.14 
* gnu/packages/check.scm (check): Update to version 0.9.14.
 2015-03-02 23:37:35 +01:00
Paul van der Walt 58acabc368 gnu: mpd: Update to 0.19.9. 
* gnu/packages/mpd.scm (mpd): Update version to 0.19.9. Add boost and
  icu4c.
 2015-03-02 23:37:35 +01:00
David Thompson bda0c1392a gnu: Add ruby-hoe. 
* gnu/packages/ruby.scm (ruby-hoe): New variable.
 2015-03-02 17:33:53 -05:00
David Thompson f3c96d474f build: ruby: Install executables in /bin. 
* guix/build/ruby-build-system.scm (install): Add '--bindir' flag to gem
  command.
 2015-03-02 17:33:53 -05:00
David Thompson 7e7c6a1ac0 build: ruby: Add gitify phase. 
* guix/build-system/ruby.scm (lower): Add git as implicit input.
* guix/build/ruby-build-system.scm (gitify): New procedure.
  (%standard-phases): Add gitify phase.
 2015-03-02 17:33:53 -05:00
David Thompson 927ff2c379 gnu: Add mpdscribble. 
* gnu/packages/mpd.scm (mpdscribble): New variable.
 2015-03-02 17:31:40 -05:00
Ludovic Courtès e343024dc4 gnu: tcsh: Use ISO-8859-1 when patching "tests/testsuite". 
* gnu/packages/tcsh.scm (tcsh)[arguments]: Set %DEFAULT-PORT-ENCODING
  before substituting "tests/testsuite".  Fixes build failure at
  <http://hydra.gnu.org/build/266962/nixlog/1/raw>.
 2015-03-02 23:18:27 +01:00
Ludovic Courtès 993300f6cc system: Create a single-file certificate bundle in /etc/ssl/certs. 
Suggested by Mark H Weaver <mhw@netris.org>.

* gnu/system.scm (certificate-bundle): New procedure.
  (etc-directory): Use it.
  [profile]: Set 'SSL_CERT_DIR', 'SSL_CERT_FILE', and 'GIT_SSL_CAINFO'.
 2015-03-02 23:05:13 +01:00
Ludovic Courtès e979e6dd52 system: Add 'x509-certificates' field, and populate /etc/ssl/certs. 
* gnu/system.scm (<operating-system>)[x509-certificates]: New field.
  (etc-directory): Add #:x509-certificates parameter and honor it.
  (operating-system-etc-directory): Pass #:x509-certificates in
  'etc-directory' call.
* doc/guix.texi (operating-system Reference): Document
  'x509-certificates'.
 2015-03-02 22:32:54 +01:00
Ludovic Courtès d6d9f1f715 gnu: Remove 'guile-reader-for-guile_1.8'. 
This was a useful example back in July 2012, but not very useful
beyond that.

* gnu/packages/guile.scm (guile-reader): Turn into a plain package.
  [source]: Use mirror:// URI.
  [inputs]: Use GUILE-2.0.
  [arguments]: Use the site/2.0 directory for --with-moduledir.
  (guile-reader/guile-1.8, guile-reader/guile-2.0): Remove.
 2015-03-02 21:40:53 +01:00
Ludovic Courtès 16c33bfb07 services: xorg: Fix file descriptor leak from SLiM/xinitrc. 
This reverts commit 9515b74554.

* gnu/services/xorg.scm (xinitrc)[builder](close-all-fdes): Start from
  file descriptor 3.
 2015-03-02 20:34:37 +01:00
Mark H Weaver 1204c5100e gnu: Add llvm-3.6.0 and clang-3.6.0. 
* gnu/packages/llvm.scm (llvm): Update to 3.6.0.
  (clang-from-llvm): New procedure.
  (clang): Update to 3.6.0.  Reimplement using 'clang-from-llvm'.
  (llvm-3.5, clang-3.5): New variables.
 2015-03-02 12:08:56 -05:00
Ricardo Wurmus 191c710139 gnu: Add crossmap. 
* gnu/packages/bioinformatics.scm (crossmap): New variable.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-03-02 17:23:56 +01:00
Ludovic Courtès 7e75a6739b gexp: Make sure 'gexp-outputs' removes duplicate outputs. 
Fixes a regression introduced in f9efe56.

* guix/gexp.scm (gexp-outputs): Add call to 'delete-duplicates'.
* tests/gexp.scm ("output list, combined gexps, duplicate output"): New
  test.
 2015-03-02 16:26:13 +01:00
宋文武 1385d37a6e gnu: gtk-xfce-engine: Update to 2.10.0. 
* gnu/packages/xfce.scm (gtk-xfce-engine): Update to 2.10.0.
 2015-03-02 21:27:42 +08:00
Ricardo Wurmus 810cff8557 gnu: Add CLIPper. 
* gnu/packages/bioinformatics.scm (clipper): New variable.
 2015-03-02 14:11:54 +01:00
Ricardo Wurmus 240ca4aae7 gnu: Add Scikit-learn. 
* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): New
  variables.
 2015-03-02 14:09:10 +01:00
宋文武 b283679951 gnu: xfconf: Re-enable tests. 
* gnu/packages/xfce.scm (xfconf)[arguments]: Add #:phases.
 2015-03-02 20:37:21 +08:00
Ricardo Wurmus d57e6d0f8e gnu: Add MACS. 
* gnu/packages/bioinformatics.scm (macs): New variable.
 2015-03-02 11:33:13 +01:00
Ricardo Wurmus a2fb1492af gnu: Add pybedtools. 
* gnu/packages/bioinformatics.scm (python2-pybedtools): New variable.
 2015-03-02 11:32:10 +01:00
Ricardo Wurmus 8d12be1eb1 gnu: Add pyyaml. 
* gnu/packages/python.scm (python-pyyaml, python2-pyyaml): New variables.
 2015-03-02 11:31:14 +01:00
Mark H Weaver 649b5e1bd4 gnu: libotr: Update to 4.1.0. 
* gnu/packages/messaging.scm (libotr): Update to 4.1.0.
 2015-03-02 00:09:09 -05:00
Mark H Weaver 9515b74554 Revert "services: xorg: Fix file descriptor leak from SLiM/xinitrc." 
This reverts commit ec4a4c46ef,
because it broke XFCE.
 2015-03-01 23:57:23 -05:00
Mark H Weaver e013220eb6 gnu: xfconf: Update to 4.12.0. 
* gnu/packages/xfce.scm (xfconf): Update to 4.12.0.  Disable tests.
 2015-03-01 20:16:45 -05:00
Mark H Weaver f6176e7870 gnu: gnu-pw-mgr: Update to 1.3. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.3.
 2015-03-01 19:44:13 -05:00
Mark H Weaver 0a5c308782 gnu: sharutils: Update to 4.15. 
* gnu/packages/compression.scm (sharutils): Update to 4.15.
 2015-03-01 19:42:57 -05:00
Mark H Weaver 5245251eaa gnu: gdb: Update to 7.9. 
* gnu/packages/gdb.scm (gdb): Update to 7.9.
 2015-03-01 19:35:46 -05:00
Mark H Weaver 3820d39739 Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/gnupg.scm
 2015-03-01 19:05:29 -05:00