9d52e3f3d5
gnu: linux-libre: Update to 5.2.7.
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* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.7.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
2019-08-07 00:28:32 -04:00
9f90e58c4a
gnu: linux-libre@4.19: Update to 4.19.65.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.65.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
2019-08-07 00:28:30 -04:00
7acea31bbc
gnu: linux-libre@4.14: Update to 4.14.137.
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* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.137.
(linux-libre-4.14-pristine-source)[hash]: Update hash.
2019-08-07 00:28:28 -04:00
2b6c7a7cbc
gnu: linux-libre@4.9: Update to 4.9.188.
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* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.188.
(linux-libre-4.9-pristine-source)[hash]: Update hash.
2019-08-07 00:28:12 -04:00
ad6814557e
gnu: linux-libre@4.4: Update to 4.4.188.
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* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.188.
(linux-libre-4.4-pristine-source)[hash]: Update hash.
2019-08-07 00:23:20 -04:00
f2758945fe
gnu: r-ggplotify: Update to 0.0.4.
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* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.4.
2019-08-06 23:38:22 +02:00
5fe9ce982d
gnu: r-bayestestr: Update to 0.2.5.
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* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.5.
2019-08-06 23:38:22 +02:00
fd3119db4f
machine: Implement safety checks.
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* gnu/machine/ssh.scm (machine-check-file-system-availability)
(machine-check-initrd-modules, check-deployment-sanity): New variable.
(deploy-managed-host): Perform safety checks before deploying.
2019-08-06 16:40:25 -04:00
5f04e9f962
reconfigure: Fix GC root installation.
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Fixes <https://bugs.gnu.org/36942 >.
Reported by ison <ison@airmail.cc>.
guix/scripts/system/reconfigure.scm (install-bootloader-program): Switch
new symlink to the canonical bootloader configuration file.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-08-06 22:21:13 +02:00
d97ce20400
machine: Rename 'system' field.
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* gnu/machine.scm (machine-system): Delete variable.
(machine-operating-system): New variable.
All callers changed.
* doc/guix.texi (Invoking guix deploy): Use the
'machine-operating-system' accessor rather than 'machine-system'.
2019-08-06 15:48:51 -04:00
5bc751925d
doc: Add note about signing keys.
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* doc/guix.texi (Invoking guix deploy): Add note explaining that
deployment targets must authorize the coordinator machine's signing key.
2019-08-06 15:16:25 -04:00
ec405a4b01
gnu: perl-hash-merge: Change inputs to propagated-inputs.
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Clone::Choose is required at runtime, so this input needs to be
propagated. This change fixes the sqitch package.
* gnu/packages/perl.scm (perl-hash-merge)[inputs]: Change to
propagated-inputs.
2019-08-06 19:53:51 +01:00
86445c8e35
gnu: ffmpeg: Update to 4.2.
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* gnu/packages/video.scm (ffmpeg): Update to 4.2.
[inputs]: Add dav1d.
* gnu/packages/video.scm (ffmpeg-3.4)[arguments]: Adjust inheritance.
2019-08-06 18:59:28 +02:00
58e37b5441
gnu: nss: Fix build failure on armhf-linux.
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Fixes <https://bugs.gnu.org/36930 >.
* gnu/packages/patches/nss-freebl-stubs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/nss.scm (nss)[source](patches): Add it.
2019-08-06 17:06:57 +02:00
b120789193
gnu: r-rsubread: Update to 1.34.6.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.6.
2019-08-06 15:49:00 +02:00
d6158ecb3b
gnu: r-abaenrichment: Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.1.
2019-08-06 15:49:00 +02:00
fbe5a0872f
gnu: r-atacseqqc: Update to 1.8.5.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.5.
2019-08-06 15:49:00 +02:00
fcbd8960c2
gnu: r-genomicinteractions: Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.1.
2019-08-06 15:49:00 +02:00
109b8ad5f9
gnu: r-chippeakanno: Update to 3.18.2.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.2.
2019-08-06 15:49:00 +02:00
c8e141ab02
gnu: r-msnid: Update to 1.18.1.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.1.
2019-08-06 15:49:00 +02:00
afe4be49f1
gnu: r-rcas: Update to 1.10.1.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.1.
2019-08-06 15:49:00 +02:00
76d9b08e1b
gnu: r-genomicfeatures: Update to 1.36.4.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.4.
2019-08-06 15:48:59 +02:00
e16fe0b50a
gnu: r-rtracklayer: Update to 1.44.2.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.2.
2019-08-06 15:48:59 +02:00
6f8760d9f8
gnu: r-summarizedexperiment: Update to 1.14.1.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.1.
2019-08-06 15:48:59 +02:00
2ebd2b440d
gnu: r-biomart: Update to 2.40.3.
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* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.3.
2019-08-06 15:48:59 +02:00
fbd761fe9b
gnu: r-limma: Update to 3.40.6.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.6.
2019-08-06 15:48:59 +02:00
8a5f9d3d56
gnu: r-edger: Update to 3.26.6.
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* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.6.
2019-08-06 15:48:59 +02:00
00300de5d0
gnu: r-xgboost: Update to 0.90.0.2.
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* gnu/packages/cran.scm (r-xgboost): Update to 0.90.0.2.
2019-08-06 15:48:59 +02:00
6fa5987606
gnu: r-citr: Update to 0.3.1.
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* gnu/packages/cran.scm (r-citr): Update to 0.3.1.
[propagated-inputs]: Remove r-bibtex.
2019-08-06 15:48:59 +02:00
5b87fae3f8
gnu: r-enrichr: Update to 2.0.
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* gnu/packages/cran.scm (r-enrichr): Update to 2.0.
2019-08-06 15:48:59 +02:00
006c3dc386
gnu: r-dalex: Update to 0.4.4.
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* gnu/packages/cran.scm (r-dalex): Update to 0.4.4.
2019-08-06 15:48:58 +02:00
22d556a8e1
gnu: r-bookdown: Update to 0.12.
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* gnu/packages/cran.scm (r-bookdown): Update to 0.12.
2019-08-06 15:48:58 +02:00
1a88de187b
gnu: r-ldheatmap: Update to 0.99-7.
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* gnu/packages/cran.scm (r-ldheatmap): Update to 0.99-7.
[propagated-inputs]: Add r-rcpp.
2019-08-06 15:48:58 +02:00
2deb1529a2
gnu: r-sf: Update to 0.7-7.
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* gnu/packages/cran.scm (r-sf): Update to 0.7-7.
2019-08-06 15:48:58 +02:00
4eed03ea41
gnu: r-deldir: Update to 0.1-23.
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* gnu/packages/cran.scm (r-deldir): Update to 0.1-23.
2019-08-06 15:48:58 +02:00
24d439868b
gnu: r-classint: Update to 0.4-1.
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* gnu/packages/cran.scm (r-classint): Update to 0.4-1.
2019-08-06 15:48:58 +02:00
8518744ec4
gnu: r-rematch2: Update to 2.1.0.
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* gnu/packages/cran.scm (r-rematch2): Update to 2.1.0.
2019-08-06 15:48:58 +02:00
bd00835630
gnu: r-irkernel: Update to 1.0.2.
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* gnu/packages/cran.scm (r-irkernel): Update to 1.0.2.
2019-08-06 15:48:58 +02:00
51c9504ba6
gnu: r-lavaan: Update to 0.6-4.
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* gnu/packages/cran.scm (r-lavaan): Update to 0.6-4.
2019-08-06 15:48:58 +02:00
01629c665b
gnu: r-bayesm: Update to 3.1-3.
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* gnu/packages/cran.scm (r-bayesm): Update to 3.1-3.
2019-08-06 15:48:57 +02:00
eebd93eb6b
gnu: r-rsvd: Update to 1.0.2.
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* gnu/packages/cran.scm (r-rsvd): Update to 1.0.2.
2019-08-06 15:48:57 +02:00
d5d631b650
gnu: r-future: Update to 1.14.0.
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* gnu/packages/cran.scm (r-future): Update to 1.14.0.
2019-08-06 15:48:57 +02:00
ffb97e695c
gnu: r-spatialextremes: Update to 2.0-7.2.
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* gnu/packages/cran.scm (r-spatialextremes): Update to 2.0-7.2.
2019-08-06 15:48:57 +02:00
504a51369f
gnu: r-bigrquery: Update to 1.2.0.
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* gnu/packages/cran.scm (r-bigrquery): Update to 1.2.0.
[propagated-inputs]: Add r-gargle and r-rlang.
2019-08-06 15:48:57 +02:00
6275418b6f
gnu: Add r-gargle.
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* gnu/packages/cran.scm (r-gargle): New variable.
2019-08-06 15:48:57 +02:00
031afc4890
gnu: r-shades: Update to 1.4.0.
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* gnu/packages/cran.scm (r-shades): Update to 1.4.0.
2019-08-06 15:48:57 +02:00
12618b5080
gnu: r-rnifti: Update to 0.11.1.
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* gnu/packages/cran.scm (r-rnifti): Update to 0.11.1.
2019-08-06 15:48:57 +02:00
b154b02620
gnu: r-flare: Update to 1.6.0.2.
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* gnu/packages/cran.scm (r-flare): Update to 1.6.0.2.
2019-08-06 15:48:57 +02:00
e0f20dce62
gnu: r-sparsesvd: Update to 0.2.
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* gnu/packages/cran.scm (r-sparsesvd): Update to 0.2.
2019-08-06 15:48:57 +02:00
14148ef1ee
gnu: r-tidytree: Update to 0.2.5.
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* gnu/packages/cran.scm (r-tidytree): Update to 0.2.5.
2019-08-06 15:48:56 +02:00
Mark H Weaver