5e0241db84
gnu: Add r-quasr.
...
* gnu/packages/bioconductor.scm (r-quasr): New variable.
2019-05-10 13:31:03 +02:00
5865606459
gnu: Add r-rhisat2.
...
* gnu/packages/bioconductor.scm (r-rhisat2): New variable.
2019-05-10 13:31:03 +02:00
1444153913
gnu: Add r-sgseq.
...
* gnu/packages/bioconductor.scm (r-sgseq): New variable.
2019-05-10 13:31:03 +02:00
30f1029f4c
gnu: Add r-xgboost.
...
* gnu/packages/cran.scm (r-xgboost): New variable.
2019-05-10 13:31:03 +02:00
29591ca611
gnu: Add r-citr.
...
* gnu/packages/cran.scm (r-citr): New variable.
2019-05-10 13:31:02 +02:00
afc4370d4c
gnu: Add r-refmanager.
...
* gnu/packages/cran.scm (r-refmanager): New variable.
2019-05-10 13:31:02 +02:00
85625cae66
gnu: Add r-ggfortify.
...
* gnu/packages/cran.scm (r-ggfortify): New variable.
2019-05-10 13:31:02 +02:00
c9487dfadc
gnu: Add r-plot3d.
...
* gnu/packages/cran.scm (r-plot3d): New variable.
2019-05-10 13:31:02 +02:00
70debac5f1
gnu: Add r-enrichr.
...
* gnu/packages/cran.scm (r-enrichr): New variable.
2019-05-10 13:31:02 +02:00
5bea832f72
gnu: Add r-dalex.
...
* gnu/packages/cran.scm (r-dalex): New variable.
2019-05-10 13:31:02 +02:00
4d06ef4b71
gnu: Add r-rbowtie.
...
* gnu/packages/bioconductor.scm (r-rbowtie): New variable.
2019-05-10 13:31:02 +02:00
8c42f8f6e8
gnu: Add r-iclusterplus.
...
* gnu/packages/bioconductor.scm (r-iclusterplus): New variable.
2019-05-10 13:31:01 +02:00
b40a36baff
gnu: linux-libre: Update to 5.1.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.
(%linux-libre-hash): Update hash.
(%linux-libre-5.0-patches): Rename to ...
(%linux-libre-5.1-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-veyron)
(linux-libre-arm-omap2plus): Use %linux-libre-5.1-patches.
(vhba-module): Move definition below the kernel packages.
* gnu/packages/aux-files/linux-libre/5.0-arm-veyron.conf,
gnu/packages/aux-files/linux-libre/5.0-arm.conf,
gnu/packages/aux-files/linux-libre/5.0-arm64.conf,
gnu/packages/aux-files/linux-libre/5.0-i686.conf,
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.1-arm-veyron.conf,
gnu/packages/aux-files/linux-libre/5.1-arm.conf,
gnu/packages/aux-files/linux-libre/5.1-arm64.conf,
gnu/packages/aux-files/linux-libre/5.1-i686.conf,
gnu/packages/aux-files/linux-libre/5.1-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2019-05-10 00:00:49 -04:00
3d8033af42
gnu: rust: Update to 1.34.1.
...
* gnu/packages/rust.scm (rust): Update to 1.34.1.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:09 +02:00
4ed20d3cfe
gnu: rust: Make source derivations smaller.
...
* gnu/packages/rust.scm (rust-source-pre-1.32): Delete procedure.
(rust-bootstrapped-package-pre-1.32): Delete procedure.
(rust-bootstrapped-package): Remove optional keys, and return an origin.
(rust-uri): New variable.
(mrustc): Change native-input "rust" to use source of rust-1.19.
(rust-1.19)[source]: Define package source.
(rust-1.20): Use rust-bootstrapped-package.
(rust-1.21): Likewise.
(rust-1.22): Likewise.
(rust-1.23): Likewise.
(rust-1.24): Likewise.
(rust-1.25): Likewise.
(rust-1.26): Likewise.
(rust-1.27): Likewise.
(rust-1.28): Likewise.
(rust-1.29): Likewise.
(rust-1.30): Likewise.
(rust-1.31): Likewise.
(rust-1.32): Likewise.
(rust-1.33): Likewise.
(rust-1.34): Likewise.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:09 +02:00
bea01c0d2b
gnu: rust: Delete install logs and manifests.
...
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[delete-install-logs]:
New phase.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:08 +02:00
e88735b45f
build/cargo-utils: Remove "src-name" parameter.
...
* gnu/packages/gnuzilla.scm (icecat)[arguments]<#:phases>
[patch-cargo-checksums]: Delete "null-file" variable.
* gnu/packages/rust.scm (%cargo-reference-project-file): Delete variable.
* gnu/packages/rust.scm (rust-1.19): Remove reference to
"%cargo-reference-project-file".
* guix/build/cargo-utils.scm (generate-checksums): Remove "src-name"
parameter.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-10 00:44:08 +02:00
d78010b81e
gnu: gcc-4.7: Hide package.
...
* gnu/packages/gcc.scm (gcc-4.7): Wrap in "hidden-package" expression.
2019-05-09 23:18:39 +02:00
935568d5ce
gnu: emacs-dash: Update to 2.16.0.
...
* gnu/packages/emacs-xyz.scm (emacs-dash): Update to 2.16.0.
2019-05-09 22:51:33 +02:00
b97b4624d0
gnu: Add guile-file-names.
...
* gnu/packages/guile-xyz.scm (guile-file-names): New variable.
2019-05-09 22:41:14 +02:00
ae623b3f9d
gnu: seabios: Update to 1.12.1.
...
This is a stable release despite the missing tarball.
<https://mail.coreboot.org/hyperkitty/list/seabios@seabios.org/thread/ONGRJVF3A45SAXOKBED52V2UD3YUWTRT/ >
* gnu/packages/firmware.scm (seabios): Update to 1.12.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
2019-05-09 21:16:54 +02:00
05de4c346d
gnu: man-pages: Update to 5.01.
...
* gnu/packages/man.scm (man-pages): Update to 5.01.
2019-05-09 21:16:53 +02:00
34dce89a0c
gnu: emacs-sml-mode: Update to 6.9.
...
* gnu/packages/emacs-xyz.scm (emacs-sml-mode): Update to 6.9.
2019-05-09 21:16:53 +02:00
b03a4ed465
gnu: cdemu-client: Update to 3.2.1.
...
* gnu/packages/cdrom.scm (cdemu-client): Update to 3.2.1.
2019-05-09 21:13:29 +02:00
97dbf75a56
gnu: cdemu-daemon: Update to 3.2.2.
...
* gnu/packages/cdrom.scm (cdemu-daemon): Update to 3.2.2.
2019-05-09 21:13:28 +02:00
d201571754
gnu: libmirage: Update to 3.2.2.
...
* gnu/packages/cdrom.scm (libmirage): Update to 3.2.2.
2019-05-09 21:13:28 +02:00
819b3b8201
gnu: vhba-module: Update to 20190410.
...
* gnu/packages/linux.scm (vhba-module): Update to 20190410.
2019-05-09 21:13:28 +02:00
38878020b0
gnu: cloc: Update to 1.82.
...
* gnu/packages/code.scm (cloc): Update to 1.82.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
2019-05-09 21:13:28 +02:00
6c2180f5d0
services: dhcp-client: Ignore interfaces that are not ARP capable.
...
* gnu/services/networking.scm (dhcp-client-service-type): Filter interfaces
that do not support the ARP protocol.
2019-05-09 20:00:22 +02:00
5f5499d684
syscalls: Add 'arp-network-interface?'.
...
* guix/build/syscalls.scm (IFF_NOARP): New variable.
(arp-network-interface?): New public procedure.
2019-05-09 20:00:21 +02:00
a0dc97a517
pull: Display 'hash guix' hint when the new and old 'guix' are different.
...
Fixes <https://bugs.gnu.org/35601 >.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.
Previously we were calling (which "guix") after the new profile had been
built and symlinked, so in most cases the hint would not be triggered,
even though it should have been triggered.
* guix/scripts/pull.scm (build-and-install)[guix-command]: New variable.
Compare PROFILE/bin/guix against GUIX-COMMAND.
2019-05-09 17:42:31 +02:00
8deb65c378
tests: Ensure 'unshare' works before relying on it.
...
Fixes <https://bugs.gnu.org/35642 >.
Reported by Josh Holland <josh@inv.alid.pw>.
* tests/guix-pack-relocatable.sh: Before invoking 'unshare' at the
bottom, add "if unshare -r true" condition.
* tests/guix-pack.sh: Likewise.
2019-05-09 17:42:31 +02:00
18160c3408
gnu: Use mirror://kernel.org in source URIs.
...
* gnu/packages/linux.scm (bridge-utils, cpufrequtils, sbc)[source](uri): Use
"mirror://kernel.org" instead of www.kernel.org directly.
2019-05-09 14:06:07 +02:00
aeb1ed1abc
gnu: wpa_supplicant: Update to 2.8 [security fixes].
...
This release fixes CVE-2019-9494, CVE-2019-9495, CVE-2019-9496, CVE-2019-9497,
CVE-2019-9498, CVE-2019-9499, and CVE-2019-11555.
* gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.8.
[source](snippet): New field. Disable D-Bus.
[arguments]: Change CONFIG_TLS to use OpenSSL rather than GnuTLS. This is
required by many of the new default build-time settings.
[inputs]: Remove GNUTLS and LIBGCRYPT. Add OPENSSL.
(wpa-supplicant)[arguments]: Remove obsolete CONFIG_CTRL_IFACE_DBUS=y.
2019-05-09 13:43:03 +02:00
3fde051bfd
gnu: libtorrent-rasterbar: Update to 1.1.13.
...
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.13.
2019-05-09 13:43:03 +02:00
3a32be71eb
gnu: leveldb: Update to 1.22.
...
* gnu/packages/databases.scm (leveldb): Update to 1.22.
2019-05-09 13:43:03 +02:00
4506018e28
gnu: Mercurial: Update to 5.0
...
* gnu/packages/version-control.scm (mercurial): Update to 5.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-09 12:11:37 +02:00
e6b1a2248f
services: Log-in services now require "pam_loginuid".
...
Fixes <https://bugs.gnu.org/35553 >.
Reported by Bruno Haible <bruno@clisp.org>.
* gnu/services/base.scm (login-pam-service): Pass #:login-uid? #t to
'unix-pam-service'.
* gnu/services/ssh.scm (lsh-pam-services, openssh-pam-services):
Likewise.
* gnu/services/xorg.scm (slim-pam-service): Likewise.
(gdm-pam-service): Likewise for "gdm-autologin" and "gdm-password".
* gnu/tests/base.scm (run-basic-test)["getlogin on tty1"]: New test.
* gnu/tests/ssh.scm (run-ssh-test): Add #:test-getlogin? parameter.
["getlogin"]: New test.
(%test-dropbear): Pass #:test-getlogin? #f.
2019-05-09 12:11:36 +02:00
af55ca481d
system: pam: Add #:login-uid? parameter to 'unix-pam-service'.
...
* gnu/system/pam.scm (unix-pam-service): Add #:login-uid? parameter. In
then 'session' field, add "pam_loginuid.so" as required when LOGIN-UID?
is true.
2019-05-09 12:11:36 +02:00
56038bac60
gnu: Add hostapd.
...
* gnu/packages/admin.scm (hostapd): New variable.
2019-05-09 12:11:36 +02:00
6ad799d7c5
services: slim: Provide the 'xorg-server' Shepherd service.
...
This is a followup to 61569171d0
2019-05-09 12:11:36 +02:00
cae0725b80
bootloader: grub: Remove unneeded 'terminal_output'.
...
Fixes <https://bugs.gnu.org/35585 >.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.
This statement was added in 8d058e7b1b
2019-05-09 12:11:36 +02:00
fb98e430d4
installer: Add missing 'G_' call.
...
* gnu/installer/newt/user.scm (run-user-page): Add 'G_' call for "User
creation".
2019-05-09 12:11:36 +02:00
4ac8dd43f0
doc: Fix typo.
...
* doc/guix.texi (cargo-build-system): Correct Carto.toml.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2019-05-09 12:54:18 +05:30
387e6b9e34
ui: Make package outputs searchable.
...
* guix/ui.scm (relevance): Allow the "field" procedure of a metric to
return a list, and handle that case appropriately. Update docstring.
(%package-metrics): Add a metric for package outputs.
* guix/scripts/package.scm (find-packages-by-description): Update
docstring.
* tests/guix-package.sh: Add a test case to verify that package outputs are
included in search results.
Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
2019-05-09 00:10:34 -07:00
063edf928a
gnu: Add python-pylibmc.
...
* gnu/packages/databases.scm (python-pylibmc, python2-pylibmc): New variables.
2019-05-09 00:22:38 -04:00
da6026792b
gnu: Add libmemcached.
...
* gnu/packages/databases.scm (libmemcached): New variable.
2019-05-09 00:22:37 -04:00
4ac69ea10f
Add (guix bzr-download).
...
* guix/bzr-download.scm, guix/build/bzr.scm,
etc/snippets/scheme-mode/guix-bzr-reference: New files.
* Makefile.am (MODULES): Add them.
* etc/snippets/scheme-mode/guix-origin: Add "bzr-fetch" to the origin choices.
2019-05-09 00:22:37 -04:00
c526b3176f
gnu: linux-libre: Update to 5.0.14.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.14.
(%linux-libre-hash): Update hash.
2019-05-08 22:51:27 -04:00
013130cf0b
gnu: linux-libre@4.19: Update to 4.19.41.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.41.
(%linux-libre-4.19-hash): Update hash.
2019-05-08 22:19:29 -04:00
Ricardo Wurmus