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45665 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice 61242625ad
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.7.
 2019-07-08 15:33:35 +02:00
Joseph LaFreniere 377b0501c4
gnu: Add emacs-polymode-org. 
* gnu/packages/emacs-xyz.scm (emacs-polymode-org): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Joseph LaFreniere 85630d8042
gnu: emacs-polymode: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-polymode): Update to 0.2.
[source]: Change URL of Git repository to Polymode GitHub project.
[homepage]: Change URL to polymode GitHub project.
[description]: Realign text.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
ison 88a29b5cd3
gnu: i3blocks: Update to ec050e7. 
* gnu/packages/wm.scm (i3blocks): Update to ec050e7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Pierre Langlois a55dd25d3e
gnu: dosfstools: Enable compat symlinks. 
Enable compatibility symlinks to provide commands such as `mkfs.vfat`.

* gnu/packages/disk.scm (dosfstools)[arguments]: Pass
"--enable-compat-symlinks" to configure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Pierre Langlois b9a1d74de5
gnu: wireservice: New wireservice-package macro. 
Replace the parent 'base-package' variable with a 'wireservice-package' macro
that includes all common package fields.

* gnu/packages/wireservice.scm (base-package): Delete.
(wireservice-package): New macro.
(python-leather, python-agate, python-agate-sql, python-agate-dbf,
python-agate-excel): Use wireservice-package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:55 +02:00
Ludovic Courtès cdf689471a
channels: Key cached channel derivations by system. 
Previously, the channel instance to derivation mapping would be
independent of the system.  Thus, building the same channel instance for
several different systems would always return the derivation that was
first computed.

This is a followup to c3ab921eed.

* guix/channels.scm (channel-instance-derivations)[instance->derivation]:
Pass the current system as a third argument to 'mcached'.
 2019-07-08 13:05:55 +02:00
Efraim Flashner c7b757c46c
gnu: gama: Update to 2.06. 
* gnu/packages/gps.scm (gama): Update to 2.06.
 2019-07-08 10:38:23 +03:00
Vagrant Cascadian d335ef51d7
gnu: diffoscope: Update to 116. 
* gnu/packages/package-management (diffoscope): Update to 116.
 2019-07-07 18:57:28 -07:00
Pierre Langlois bf187d92e3
gnu: Add csvkit. 
* gnu/packages/wireservice.scm (csvkit): New variable.
* gnu/packages/patches/csvkit-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois 213b05f04e
gnu: Add python-agate-excel. 
* gnu/packages/wireservice.scm (python-agate-excel): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois f1122a2c91
gnu: Add python-agate-dbf. 
* gnu/packages/wireservice.scm (python-agate-dbf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois 9b2850c845
gnu: Add python-agate-sql. 
* gnu/packages/wireservice.scm (python-agate-sql): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois dc835e75ce
gnu: Add python-agate. 
* gnu/packages/wireservice.scm (python-agate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois 451742bcf6
gnu: Add python-leather. 
* gnu/packages/wireservice.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois edeb04bfb7
gnu: Add python-dbfread. 
* gnu/packages/python-xyz.scm (python-dbfread): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois 450d5dc289
gnu: Add python-crate. 
* gnu/packages/databases.scm (python-crate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois 0d5b7ea11f
gnu: Add python-pytimeparse. 
* gnu/packages/time.scm (python-pytimeparse): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Pierre Langlois 6543bc80b4
gnu: Add python-slugify. 
* gnu/packages/python-web.scm (python-slugify): New variable.
* gnu/packages/patches/python-slugify-depend-on-unidecode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung e41ba8606f
gnu: Add emacs-moe-theme-el. 
* gnu/packages/emacs-xyz.scm (emacs-moe-theme-el): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung ae429e48d1
gnu: emacs-goto-chg: Update to 1.7.3-1.1829a13. 
* gnu/packages/emacs-xyz.scm (emacs-goto-chg): Update to 1.7.3-1.1829a13.
[origin]: Use GIT-FETCH and GIT-REFERENCE.
[home-page]: Update.
[inputs]: Add emacs-undo-tree.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung 81d1baafdb
gnu: emacs-hydra: Update to 0.15.0. 
* gnu/packages/emacs-xyz.scm (emacs-hydra): Update to 0.15.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung b453637f1b
gnu: Add emacs-lpy. 
* gnu/packages/emacs-xyz.scm (emacs-lpy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung 55a0b2a08d
gnu: emacs-md4rd: Update to 0.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-md4rd): Update to 0.3.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung 26150eac73
gnu: emacs-zoutline: Update to 0.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-zoutline): Update to 0.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 9f6dca4de3
gnu: emacs-restclient: Update to 0-2.422ee8d. 
* gnu/packages/emacs-xyz.scm (emacs-restclient): Update to 0-2.422ee8d.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung fa71034115
gnu: emacs-disk-usage: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-disk-usage)[source]: Use GIT-FETCH and GIT-FILE-NAME.
[home-page] Move to usual location.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 8330715878
gnu: emacs-fish-completion: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-fish-completion)[source]: Use GIT-FETCH
  and GIT-FILE-NAME.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 846d83482f
gnu: emacs-company-restclient: Update to 0.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-company-restclient): Update to 0.3.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 1fd2886ca7
gnu: emacs-skewer-mode: Update to 1.8.0. 
* gnu/packages/emacs-xyz.scm (emacs-skewer-mode): Update to 1.8.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 9ee3be1bd5
gnu: emacs-simple-httpd: Update to 1.5.1. 
* gnu/packages/emacs-xyz.scm (emacs-simple-httpd): Update to 1.5.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung 1c9ea5aaa4
gnu: emacs-git-timemachine: Update to 4.10. 
* gnu/packages/emacs-xyz.scm (emacs-git-timemachine): Update to 4.10.
[propagated-inputs] Add emacs-transient.
[source] Use GIT-FETCH and GIT-REFERENCE.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:17 +02:00
Ludovic Courtès 866822b738
build: Remove outdated 'release.nix'. 
This file had been unmaintained and probably broken since ~2013.

* release.nix: Remove.
* Makefile.am (EXTRA_DIST): Adjust accordingly.
 2019-07-07 15:48:17 +02:00
Ludovic Courtès ccadafdcef
build: Add 'doc/build.scm' to build on-line copies of the manual. 
* doc/build.scm: New file.
* Makefile.am (EXTRA_DIST): Add it.
 2019-07-07 15:48:17 +02:00
Rutger Helling aad6596294
gnu: wine-staging: Update to 4.12.1. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.12.1.
* gnu/packages/wine.scm (wine-staging): Update to 4.12.1.
 2019-07-07 13:51:06 +02:00
Christopher Baines d029afdd2d
gnu: Update lollypop to 1.1.3.1. 
* gnu/packages/gnome.scm (lollypop): Update to 1.1.3.1.
[inputs]: Add python-pil.
 2019-07-07 12:24:19 +01:00
Mark H Weaver 079c93e1c1
self: Ship the (gnu machine …) modules. 
This is a followup to commit fa9edf09e9.

* guix/self.scm (compiled-guix)[*system-modules*]: Explicitly add all of
gnu/machine/*.
 2019-07-06 20:08:35 -04:00
Marius Bakke c72647fbae
gnu: xpad: Build against gtksourceview@3. 
* gnu/packages/gnome.scm (xpad)[inputs]: Change GTKSOURCEVIEW to GTKSOURCEVIEW-3.
 2019-07-06 20:43:00 +02:00
Marius Bakke 4ed252c332
gnu: jsoncpp: Update to 1.9.0. 
* gnu/packages/serialization.scm (jsoncpp): Update to 1.9.0.
 2019-07-06 18:49:52 +02:00
Marius Bakke f1818f96a3
gnu: jsoncpp: Fetch sources through git. 
* gnu/packages/serialization.scm (jsoncpp)[source]: Switch to GIT-FETCH.
 2019-07-06 18:48:56 +02:00
Marius Bakke f4d562b008
gnu: libraw: Update to 0.19.3. 
* gnu/packages/photo.scm (libraw): Update to 0.19.3.
 2019-07-06 18:44:15 +02:00
Marius Bakke e9cb6edd06
gnu: python-soupsieve: Update to 1.9.2. 
* gnu/packages/python-xyz.scm (python-soupsieve): Update to 1.9.2.
 2019-07-06 18:39:17 +02:00
Brian Leung e39d4933d1
gnu: python-setuptools: Update to 41.0.1. 
* gnu/packages/python-xyz.scm (python-setuptools): Update to 41.0.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-07-06 18:26:02 +02:00
Marius Bakke 5bef0f108c
gnu: python-olefile: Update to 0.46. 
* gnu/packages/python-xyz.scm (python-olefile): Update to 0.46.
[source]: Switch to release tarball instead of git snapshot.
 2019-07-06 18:26:02 +02:00
Jakob L. Kreuze 834b8a4110
Remove references to non-existent 'tests/machine.scm'. 
* Makefile.am (SCM_TESTS): Remove 'tests/machine.scm' line.
 2019-07-06 05:19:09 -04:00
Ludovic Courtès 8dfb0c969e
tests: encrypted-root-os: Increase root partition size. 
1.2G had become slightly too small on x86_64.

* gnu/tests/install.scm (%encrypted-root-installation-script): Increase
root partition size to 1.3G.
 2019-07-06 16:17:24 +02:00
Ludovic Courtès c3ab921eed
ci: 'channel-build-system' honors the target system. 
Fixes a bug made evident e79281be105b16153c375af5506db31fd1e32698: the
x86_64-linux derivation of 'current-guix' would be cached and reused for
i686-linux, leading to test
failures.

Namely, /run/current-system/profile/bin/guix would have an x86_64
binary in its shebang, and thus it would end up being interpreted by
/bin/sh, which would fail like this:

  + guix --version
  /run/current-system/profile/bin/guix: line 2: !#: command not found
  /run/current-system/profile/bin/guix: line 3: syntax error near unexpected token `set!'
  /run/current-system/profile/bin/guix: line 3: `(begin (set! %load-path …

See <https://ci.guix.gnu.org/build/1431119/details>.

* gnu/ci.scm (channel-build-system)[build]: Pass #:system to
'run-with-store'.
 2019-07-06 16:17:24 +02:00
Ludovic Courtès d9e6217f4e
channels: Simplify 'channel-instances->manifest'. 
* guix/channels.scm (channel-instances->manifest)[instance->entry]:
Change to take two arguments instead of a tuple.  Turn into a
non-monadic procedure.
Call it via 'map' instead of 'mapm'.
 2019-07-06 16:17:24 +02:00
Rutger Helling 403f2189aa
gnu: wine-staging: Update to 4.12. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.12.
* gnu/packages/wine.scm (wine-staging): Update to 4.12.
 2019-07-06 10:47:51 +02:00
Ludovic Courtès 935e79af61
linux-container: Mount a new /dev/pts instance in the container. 
Fixes <https://bugs.gnu.org/36463>.
Reported by Steffen Rytter Postas <nc@scalehost.eu>.

* gnu/build/linux-container.scm (mount-file-systems): When /dev/ptmx
exists on the host, explicitly mount a new instance of devpts and make
/dev/ptmx a symlink to /dev/pts/ptmx.
 2019-07-06 00:26:58 +02:00