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16853 Commits

Author SHA1 Message Date
Hartmut Goebel 80983df357
gnu: python2-discogs-client: Remove python2-setuptools from inputs. 
* gnu/packages/music.scm (python2-discogs-client): Use simply
  "package-with-python2". Remove inheriting from python-discogs-client
  since adding python2-setuptools to [native-inputs] has been the sole
  reason for inheriting.
  (python-discogs-client) Remove the now needless [properties]
  "python2-variant".
 2016-11-29 19:02:35 +01:00
Efraim Flashner 072f1e22cc
gnu: dovecot: Update to 2.2.26.0. 
* gnu/packages/mail.scm (dovecot): Update to 2.2.26.0.
[arguments]: Patch shebangs in test file.
 2016-11-29 19:52:21 +02:00
Hartmut Goebel 3bf4280659
Merge branch 'master' into python-build-system 2016-11-29 18:47:16 +01:00
Hartmut Goebel 2cb64f3b1b
gnu: wicd: Fix build. 
* gnu/packages/wicd.scm (wicd) [arguments]: Disable installation
  via setuptools (and --single-version-externally-managed).
 2016-11-29 18:39:16 +01:00
Hartmut Goebel 388606a72b
gnu: wxPython: Remove useless inputs. 
* gnu/packages/wxwidgets.scm (python2-wxpython) [native-inputs]: Remove
  setuptools, which is already included in python.
 2016-11-29 18:39:15 +01:00
Hartmut Goebel 6f1dcafd81
gnu: wxPython: Fix build. 
* gnu/packages/wxwidgets.scm (python2-wxpython) [arguments]: Disable
  installation via setuptools (and --single-version-externally-managed).
 2016-11-29 18:39:14 +01:00
Ludovic Courtès 683c5ab70a
gnu: oxygen-icons: Add 'upstream-name' property. 
Fixes <http://bugs.gnu.org/25020>.
Reported by Hartmut Goebel <h.goebel@goebel-consult.de>.

* gnu/packages/kde-frameworks.scm (oxygen-icons)[properties]: New
field.
 2016-11-29 16:12:32 +01:00
Ludovic Courtès 3e95d88d51
gnu-maintenance: 'latest-kde-release' honors 'upstream-name' properties. 
* guix/gnu-maintenance.scm (latest-kde-release): Honor the
'upstream-name' property of PACKAGE.
 2016-11-29 16:12:31 +01:00
Ludovic Courtès e9c72306fd
refresh: Warn about packages that lack an updater. 
* guix/upstream.scm (package-update-path): Rename to...
(package-latest-release): ... this.  Remove 'version>?' check.
(package-latest-release*): New procedure.
(package-update): Use it.
* guix/scripts/refresh.scm (lookup-updater): Rename to...
(lookup-updater-by-name): ... this.
(warn-no-updater): New procedure.
(update-package): Add #:warn? parameter and honor it.
(check-for-package-update): New procedure.
(guix-refresh)[warn?]: New variable.
Replace inline code when UPDATE? is false with a call to
'check-for-package-update'.
Pass WARN? to 'check-for-package-update' and 'update-package'.
* doc/guix.texi (Invoking guix refresh): Document it.  Fix a couple of
typos.
 2016-11-29 16:12:31 +01:00
Efraim Flashner a409de9811
gnu: efl: Update to 1.18.3. 
* gnu/packages/enlightenment.scm (efl): Update to 1.18.3.
 2016-11-29 16:12:47 +02:00
Efraim Flashner 07cda02c5b
gnu: wine: Use 'modify-phases' syntax. 
* gnu/packages/wine.scm (wine)[arguments]: Use 'modify-phases' syntax.
 2016-11-29 16:12:47 +02:00
Efraim Flashner 658c987fdd
gnu: wine: Update to 1.9.24. 
* gnu/packages/wine.scm (wine): Update to 1.9.24.
[home-page]: Use https.
 2016-11-29 16:12:41 +02:00
Ricardo Wurmus ded69d6f86
gnu: Add non-session-manager. 
* gnu/packages/music.scm (non-session-manager): New variable.
 2016-11-29 10:59:17 +01:00
Efraim Flashner 0944bb1a6a
gnu: offlineimap: Update to 7.0.10. 
* gnu/packages/mail.scm (offlineimap): Update to 7.0.10.
 2016-11-29 11:02:39 +02:00
Efraim Flashner c51d926c74
gnu: cairo: Fix CVE-2016-9082. 
* gnu/packages/gtk.scm (cairo)[replacement]: New field.
(cairo/fixed): New variable.
(cairo-xcb)[source]: Use patch.
[replacement]: New field, set false.
* gnu/packages/pdf.scm (poppler)[inputs]: Custom cairo should be
replaced by a new custom patched cairo.
* gnu/packages/patches/cairo-CVE-2016-9082.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2016-11-29 09:45:48 +02:00
Efraim Flashner eb55f01821
gnu: Add viewnior. 
* gnu/packages/image-viewers.scm (viewnior): New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-11-29 09:38:33 +02:00
Efraim Flashner 22486fbea6
gnu: Add wgetpaste. 
* gnu/packages/wget.scm (wgetpaste): New variable.
 2016-11-29 09:35:39 +02:00
Efraim Flashner 3e757c005f
gnu: aspell-dict-en: Update to 2016.11.20-0. 
* gnu/packages/aspell.scm (aspell-dict-en): Update to 2016.11.20-0.
 2016-11-29 09:35:11 +02:00
John Darrington 0c85db79f7
gnu: Allow nfs file systems to be automatically mounted. 
* gnu/build/file-systems.scm (mount-file-system): Append target addr= when
mounting nfs filesystems.
 2016-11-29 07:21:15 +01:00
Marius Bakke 7c635ed6f7
gnu: perl-dbd-mysql: Update to 4.041 [security fix]. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.041.
[source]: Update CPAN URI.
 2016-11-28 23:05:23 +01:00
Ludovic Courtès d2bcf35e18
vm: Avoid needless file copy in 'load-in-linux-vm'. 
Reported by Chris Webber.

* gnu/build/vm.scm (load-in-linux-vm)[image-file]: Remove.  Directly
refer to OUTPUT instead.
 2016-11-28 22:58:18 +01:00
Ludovic Courtès c062b1eb6c
pull: Set '%nix-instantiate' to a sensible value. 
Reported by ng0 <ng0@libertad.pw>.
Fixes <http://bugs.gnu.org/25053>.

* guix/build/pull.scm (build-guix): Replace "@NIX_INSTANTIATE@" in
guix/config.scm with "nix-instantiate".
 2016-11-28 22:58:18 +01:00
Ludovic Courtès 9a5187b687
doc: Document NSS incompatibility issues on foreign distros. 
* doc/guix.texi (Application Setup)[Name Service Switch]: New
subsection.
 2016-11-28 22:58:18 +01:00
Ricardo Wurmus bd3be46e7f
gnu: Add r-gkmsvm. 
* gnu/packages/bioinformatics.scm (r-gkmsvm): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 419a8a186f
gnu: Add r-rocr. 
* gnu/packages/statistics.scm (r-rocr): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 0cfe0570f2
gnu: Add r-gplots. 
* gnu/packages/statistics.scm (r-gplots): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 6034cd905e
gnu: Add r-gdata. 
* gnu/packages/statistics.scm (r-gdata): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 2d9fb1702f
gnu: Add r-seqgl. 
* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus c827f20286
gnu: Add r-chipkernels. 
* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1571f90e35
gnu: Add r-gtools. 
* gnu/packages/statistics.scm (r-gtools): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus f05c7eb48d
gnu: Add r-kernlab. 
* gnu/packages/machine-learning.scm (r-kernlab): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 6335bf1c80
gnu: Add r-sfsmisc. 
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus d71605294f
gnu: Add r-wgcna. 
* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1bd46f5520
gnu: Add r-fastcluster. 
* gnu/packages/statistics.scm (r-fastcluster): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus c4708783ee
gnu: Add r-preprocesscore. 
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus c9a6671490
gnu: Add r-dynamictreecut. 
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus e619a5c245
gnu: Add r-r4rna. 
* gnu/packages/bioinformatics.scm (r-r4rna): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus e7d16ad161
gnu: Add r-spams. 
* gnu/packages/statistics.scm (r-spams): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus 9f5435d963
gnu: Add r-googlesheets. 
* gnu/packages/statistics.scm (r-googlesheets): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus d427e03eee
gnu: Add r-cellranger. 
* gnu/packages/statistics.scm (r-cellranger): New variable.
 2016-11-28 22:43:15 +01:00
Ricardo Wurmus 58612fd2c8
gnu: Add r-rematch. 
* gnu/packages/statistics.scm (r-rematch): New variable.
 2016-11-28 22:43:15 +01:00
Ricardo Wurmus e48ddb9628
doc: Suggest installing gvfs. 
* gnu/system/examples/desktop.tmpl: Add gvfs to the system-wide list of
packages.
 2016-11-28 22:09:38 +01:00
Ricardo Wurmus eb21d24806
gnu: lv2: Update to 1.14.0. 
* gnu/packages/audio.scm (lv2): Update to 1.14.0.
 2016-11-28 22:08:37 +01:00
Ricardo Wurmus 1bbe79594e
gnu: non-sequencer: Update to 1.9.5-2.a22f33f. 
* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-2.a22f33f.
 2016-11-28 22:07:20 +01:00
Efraim Flashner 5e9cce55b5
gnu: ntp: Update to 4.2.8p9. 
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p9.
 2016-11-28 21:56:30 +02:00
Efraim Flashner d35de59b64
gnu: ntp: Fix indentation. 
* gnu/packages/ntp.scm (ntp): Fix indentation to only use spaces.
 2016-11-28 20:53:14 +02:00
John Darrington f0ddc5e55b
gnu: Add editres. 
* gnu/packages/xorg.scm (editres): New variable.
 2016-11-28 18:22:15 +01:00
Ben Woodcroft 9926875572
gnu: Add newick-utils. 
* gnu/packages/bioinformatics.scm (newick-utils): New variable.
 2016-11-28 09:00:41 +10:00
Ludovic Courtès aa28ecc40a
pull: Hack to allow compilation with older Guile-SSH packages. 
Reported by iyzsong@member.fsf.org (宋文武)
at <https://lists.gnu.org/archive/html/guix-devel/2016-11/msg01045.html>.

* build-aux/build-self.scm (build): Set 'LTDL_LIBRARY_PATH' when
GUILE-SSH has a "0.9." version prefix.
 2016-11-27 23:06:09 +01:00
Efraim Flashner c7a70c336f
gnu: jasper: Update to 2.0.0 [fixes security issues]. 
* gnu/packages/image.scm (jasper): Update to 2.0.0.
[build-system]: Switch to cmake-build-system.
 2016-11-27 22:19:55 +02:00