674a0f9558
gnu: w3m: Switch to Debian's actively maintained fork of w3m.
...
Fixes some security issues seen here:
<http://www.openwall.com/lists/oss-security/2016/11/03/3 >
* gnu/packages/w3m.scm (w3m): Switch it.
[source]: Use Debian's git tree. Remove obsolete patches.
[arguments]: Remove an unneeded substitute* function.
* gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch,
gnu/packages/patches/w3m-disable-weak-ciphers.patch,
gnu/packages/patches/w3m-force-ssl_verify_server-on.patch,
gnu/packages/patches/w3m-libgc.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2016-11-04 20:06:03 -04:00
682bfb8124
gnu: webkitgtk: Update to 2.14.2.
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* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.1.
2016-11-04 19:49:11 -04:00
c27ae827da
gnu: Add jupyter.
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* gnu/packages/python.scm (jupyter): New variable.
2016-11-04 21:23:08 +01:00
accd5f996e
gnu: python-ipython: Update to 4.0.0.
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* gnu/packages/python.scm (python-ipython): Update to 4.0.0.
[inputs]: Keep only "readline" and "which"; move the remaining inputs
to propagated-inputs, except for "python-requests" and "python-nose"
which are moved to native-inputs.
[propagated-inputs]: Add "python-pexpect", "python-pickleshare",
"python-simplegeneric", "python-traitlets", "python-ipykernel".
[native-inputs]: Add "python-testpath".
[arguments]: Enable building of HTML documentation.
[source]: Remove patch.
* gnu/packages/patches/python-ipython-inputhook-ctype.patch: Remove
patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-11-04 21:23:07 +01:00
8ceebf8fa6
gnu: Add python-jupyter-console.
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* gnu/packages/python.scm (python-jupyter-console,
python2-jupyter-console): New variable.
2016-11-04 21:23:07 +01:00
4fe2e34409
gnu: Add python-ipywidgets.
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* gnu/packages/python.scm (python-ipywidgets, python2-ipywidgets): New
variables.
2016-11-04 21:23:06 +01:00
d55724ed5b
gnu: Add python-widgetsnbextension.
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* gnu/packages/python.scm (python-widgetsnbextension,
python2-widgetsnbextension): New variables.
2016-11-04 21:23:06 +01:00
a0d62280f5
gnu: Add python-notebook.
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* gnu/packages/python.scm (python-notebook, python2-notebook): New
variables.
2016-11-04 21:23:05 +01:00
c60898a845
gnu: Add python-nbconvert.
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* gnu/packages/python.scm (python-nbconvert, python2-nbconvert): New
variables.
2016-11-04 21:23:05 +01:00
60590a3ae8
gnu: Add python-entrypoints.
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* gnu/packages/python.scm (python-entrypoints, python2-entrypoints): New
variables.
2016-11-04 21:23:04 +01:00
08722837b0
gnu: chromium-bsu: Update to 0.9.16.1.
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* gnu/packages/games.scm (chromium-bsu): Update to 0.9.16.1.
[arguments]: Remove 'set-sdl-paths phase.
[inputs]: Add gnu-gettext.
2016-11-04 11:17:09 -04:00
bd2e1a8cb0
gnu: cross-base: Remove exports of cross compilers.
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They were never really needed and caused troubles in the presence of
circular module dependencies as reported by
Danny Milosavljevic <dannym@scratchpost.org> at
<https://lists.gnu.org/archive/html/guix-devel/2016-11/msg00144.html >.
* gnu/packages/cross-base.scm (xgcc-mips64el, xgcc-xtensa, xgcc-armhf):
Remove.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Use
'cross-gcc' instead of XGCC-XTENSA.
2016-11-04 15:36:00 +01:00
fb77c61422
gnu: Remove '%final-inputs' references at the top level.
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Due to circular dependencies, referring to bindings exported by other
modules from the top level is frowned upon. This patch addresses one of
the remaining cases.
* gnu/packages/base.scm (%final-inputs): New procedure.
* gnu/packages/cross-base.scm: Remove (gnu packages commencement) import.
(cross-gcc): Use the new '%final-inputs'.
* gnu/packages/make-bootstrap.scm: Remove (gnu packages commencement) import.
(package-with-relocatable-glibc): Use the new '%final-inputs'.
2016-11-04 15:36:00 +01:00
8af47ef603
gnu: r-nmf: Use bigmemory.
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* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
2016-11-04 14:53:24 +01:00
59523c4cf5
gnu: Add r-bigmemory.
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* gnu/packages/statistics.scm (r-bigmemory): New variable.
2016-11-04 14:46:47 +01:00
4a83865286
gnu: Add r-synchronicity.
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* gnu/packages/statistics.scm (r-synchronicity): New variable.
2016-11-04 14:40:13 +01:00
c6105d69c0
gnu: Add r-bigmemory-sri.
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gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
2016-11-04 14:35:04 +01:00
1a79d4767a
gnu: xmp: Update to 4.1.0.
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* gnu/packages/audio.scm (xmp): Update to 4.1.0.
2016-11-04 21:08:44 +08:00
2784fca032
gnu: libxmp: Update to 4.4.1.
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* gnu/packages/audio.scm (libxmp): Update to 4.4.1.
2016-11-04 21:08:44 +08:00
18f3d92b39
gnu: Add swh-plugins-lv2.
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* gnu/packages/audio.scm (swh-plugins-lv2): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2016-11-04 12:11:06 +01:00
55436048d8
gnu: Add python-bleach.
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* gnu/packages/python.scm (python-bleach, python2-bleach): New
variables.
2016-11-04 11:32:35 +01:00
2d321bb2c5
gnu: Add python-nbformat.
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* gnu/packages/python.scm (python-nbformat, python2-nbformat): New
variables.
2016-11-04 11:29:16 +01:00
8ee62c97f6
gnu: Add python-html5lib-0.9.
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* gnu/packages/python.scm (python-html5lib-0.9, python2-html5lib-0.9):
New variables.
2016-11-04 11:26:34 +01:00
5ff6effcc0
gnu: Add python-testpath.
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* gnu/packages/python.scm (python-testpath, python2-testpath): New
variables.
2016-11-04 11:24:02 +01:00
ab526102ed
gnu: Add python-ipykernel.
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* gnu/packages/python.scm (python-ipykernel, python2-ipykernel): New
variables.
2016-11-04 11:23:19 +01:00
9ff01f2d01
gnu: Add python-jupyter-client.
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* gnu/packages/python.scm (python-jupyter-client,
python2-jupyter-client): New variables.
2016-11-04 11:22:54 +01:00
4263b06fa2
gnu: Add python-jupyter-core.
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* gnu/packages/python.scm (python-jupyter-core, python2-jupyter-core):
New variables.
2016-11-04 11:21:37 +01:00
a5ba14811a
gnu: python-traitlets: Update to 4.2.0.
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* gnu/packages/python.scm (python-traitlets): Update to 4.2.0.
2016-11-04 11:19:22 +01:00
6e1d7aa94e
gnu: Add font-adobe-source-code-pro.
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* gnu/packages/fonts.scm (font-adobe-source-code-pro): New variable.
2016-11-03 20:32:04 +00:00
b4edcd28cf
gnu: Add geteltorito.
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* gnu/packages/cdrom.scm (geteltorito): New variable.
2016-11-03 20:31:36 +00:00
ccbc575824
gnu: maxima: Update to 5.38.1.
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* gnu/packages/maths.scm (maxima): Update to 5.38.1.
2016-11-03 16:14:05 -04:00
043f1535c2
gnu: starfighter: Update to 1.6.
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* gnu/packages/games.scm (starfighter): Update to 1.6.
2016-11-03 15:40:17 -04:00
ed8fbe5e62
gnu: r-rcas: Update to 1.0.0.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.0.0.
2016-11-03 19:01:46 +01:00
16a8bd3194
gnu: r-rtracklayer: Update to 1.34.1.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.1.
2016-11-03 19:01:46 +01:00
c15ae9b008
gnu: r-biocparallel: Update to 1.8.1.
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* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.1.
2016-11-03 19:01:46 +01:00
5b3b2d2f02
gnu: r-limma: Update to 3.30.2.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.2.
2016-11-03 19:01:46 +01:00
ed3054231d
gnu: r-edger: Update to 3.16.1.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.1.
2016-11-03 19:01:45 +01:00
e71659162b
gnu: r-hmisc: Update to 4.0.0.
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* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
2016-11-03 19:01:45 +01:00
f158b92caf
gnu: r-r-oo: Update to 1.21.0.
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* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
2016-11-03 19:01:45 +01:00
f890981690
gnu: r-openssl: Update to 0.9.5.
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* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
2016-11-03 19:01:45 +01:00
fbe5161c7d
gnu: r-checkmate: Update to 1.8.2.
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* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
2016-11-03 19:01:45 +01:00
572e1a0ca7
gnu: r-acepack: Update to 1.4.1.
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* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
2016-11-03 19:01:44 +01:00
054a9a786b
gnu: r-gdtools: Update to 0.1.1.
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* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
2016-11-03 19:01:44 +01:00
d13a4e2575
gnu: r-proto: Update to 1.0.0.
...
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
2016-11-03 19:01:44 +01:00
ebbd4d0bfd
gnu: Add r-survival.
...
* gnu/packages/statistics.scm (r-survival): New variable.
2016-11-03 19:01:44 +01:00
ac3265abad
gnu: Add r-htmltable.
...
* gnu/packages/web.scm (r-htmltable): New variable.
2016-11-03 19:01:44 +01:00
b81245ccb3
[PATCH] gnu: Add libjxr.
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* gnu/packages/image.scm (libjxr): New variable.
* gnu/packages/patches/libjxr-fix-function-signature.patch: New file.
* gnu/packages/patches/libjxr-fix-typos.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patches.
2016-11-03 13:43:23 -04:00
e3100110ce
import: cran: Fix off-by-one error.
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* guix/import/cran.scm (package->upstream-name): Do not include leading
slash in upstream name URL.
2016-11-03 16:03:28 +01:00
b054b26a48
gnu: sunxi-tools: Update to 1.4.1.
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* gnu/packages/admin.scm (sunxi-tools): Update to 1.4.1.
[arguments]: Add "CC=gcc" "all" to #:make-flags. Remove 'fix-Makefile'
phase. Add 'install' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-03 15:58:04 +01:00
6cb02e6e00
tests: 'make check-system' prints the "build trace".
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* build-aux/run-system-tests.scm (run-system-tests): Pass
#:print-build-trace to 'set-build-options*'.
2016-11-03 15:44:49 +01:00
Kei Kebreau