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17366 Commits

Author SHA1 Message Date
Efraim Flashner c76dab7b36
gnu: Add stfl. 
* gnu/packages/ncurses.scm (stfl): New variable.
 2016-11-12 20:50:47 +02:00
Alex Sassmannshausen 8883b30165
gnu: Add perl-modern-perl. 
* gnu/packages/perl.scm (perl-modern-perl): New variable.
 2016-11-12 18:26:28 +01:00
Leo Famulari 5c66314bd9
gnu: libtiff: Fix CVE-2016-9273. 
* gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
 2016-11-12 11:05:19 -05:00
Danny Milosavljevic 0a7f17f0e0
gnu: Add python-flask-restplus. 
* gnu/packages/python.scm (python-flask-restplus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-12 16:17:40 +01:00
Danny Milosavljevic 1e6112d89f
gnu: Add python-rednose. 
* gnu/packages/python.scm (python-rednose): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-12 16:15:08 +01:00
Danny Milosavljevic e2fca4906e
gnu: Add python-termstyle. 
* gnu/packages/python.scm (python-termstyle): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-12 16:10:23 +01:00
Ludovic Courtès 998f9ac56d
gnu: guix: Update development snapshot. 
This is a followup to 166ba5b102.

* gnu/packages/package-management.scm (guix-devel): Update to commit
166ba5b102.
 2016-11-12 14:49:04 +01:00
Ludovic Courtès 166ba5b102
substitute: Disable HTTPS certificate verification. 
Fixes a regression introduced in
9e4e431e04 as a consequence of
bc3c41ce36.
Reported by Marius Bakke <mbakke@fastmail.com>.

* guix/scripts/substitute.scm (fetch): Pass #:verify-certificate? #f to
'open-connection-for-uri' and 'http-fetch'.
(download-cache-info): Likewise.
(http-multiple-get): Add #:verify-certificate? and honor it.
(fetch-narinfos): Pass #:verify-certificate? #f.
 2016-11-12 13:04:45 +01:00
Ludovic Courtès 17cff9c662
http-client: Add #:verify-certificate? to 'http-fetch'. 
* guix/http-client.scm (http-fetch): Add #:verify-certificate? parameter
and pass it to 'open-connection-for-uri'.
 2016-11-12 13:04:45 +01:00
Ludovic Courtès eda2ad5cd1
nls: Update 'fr' translation. 2016-11-12 13:04:45 +01:00
Clément Lassieur 4a38422157
gnu: prosody: fix SSL/TLS. 
* gnu/packages/lua.scm (lua5.1-sec-0.5): New variable.
* gnu/packages/messaging.scm (prosody):
[inputs]: Change lua5.1-sec to lua5.1-sec-0.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-12 13:04:45 +01:00
John Darrington e32171eeeb
doc: Added some index entries. 
* doc/guix.texi: Added various @cindex tags to assist readers.
 2016-11-12 06:52:34 +01:00
Ben Woodcroft 8be62d3f20
gnu: ruby-lumberjack: Update to 1.0.10. 
* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.10.
[native-inputs]: Add 'ruby-timecop'.
 2016-11-11 22:56:13 +10:00
Ben Woodcroft e87dfdee86
gnu: ruby-arel: Update to 7.1.4. 
* gnu/packages/ruby.scm (ruby-arel): Update to 7.1.4.
 2016-11-11 22:48:22 +10:00
Ben Woodcroft 16d8d8b289
gnu: ruby-rake-compiler: Update to 1.0.1. 
* gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.1.
 2016-11-11 22:45:38 +10:00
Ben Woodcroft 81d0bd2f44
gnu: ruby-hoe: Update to 3.15.2. 
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.15.2.
 2016-11-11 22:44:03 +10:00
Ben Woodcroft c59491183a
gnu: ruby-rspec-core: Update to 3.5.4. 
* gnu/packages/ruby.scm (ruby-rspec-core): Update to 3.5.4.
 2016-11-11 22:40:39 +10:00
Ben Woodcroft bb4bcb02c2
gnu: bundler: Update to 1.13.6. 
* gnu/packages/ruby.scm (bundler): Update to 1.13.6.
 2016-11-11 22:38:13 +10:00
Ben Woodcroft e2bb2e1780
gnu: ruby-yard: Update to 0.9.5-1.d816482a. 
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.5-1.d816482a.
[source]: Update source URL.
[arguments]: Remove unneeded substitutions.  Change test target.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch (New
file)
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-11-11 22:15:37 +10:00
Ricardo Wurmus 7c45670b32
gnu: r-org-mm-eg-db: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.4.0.
 2016-11-11 09:08:08 +01:00
Ricardo Wurmus 0cfac6f270
gnu: r-org-dm-eg-db: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.4.0.
 2016-11-11 09:08:08 +01:00
Ricardo Wurmus f04a3eff98
gnu: r-org-ce-eg-db: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.4.0.
 2016-11-11 09:08:08 +01:00
Ricardo Wurmus 83f9a6fb60
gnu: r-org-hs-eg-db: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.4.0.
 2016-11-11 09:08:07 +01:00
Leo Famulari 071c223bfa
gnu: linux-libre@4.4: Update to 4.4.31. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.31.
 2016-11-11 01:31:19 -05:00
Leo Famulari 86fc6fe777
gnu: linux-libre: Update to 4.8.7. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.7.
 2016-11-11 01:31:15 -05:00
Ludovic Courtès 472fc855bc
gnu: Add guile-aspell. 
* gnu/packages/guile.scm (guile-aspell): New variable.
 2016-11-11 00:23:16 +01:00
Ludovic Courtès 2c5ab05bff
gnu: wordnet: Build with gcc@6 to prevent chunked literal strings. 
* gnu/packages/wordnet.scm (wordnet)[arguments]: Remove
-fno-builtin-strcpy.
[native-inputs]: New field.
 2016-11-11 00:23:16 +01:00
Leo Famulari aba5182c69
gnu: python-pillow: Update to 3.3.3 [fixes CVE-2016-{9189,9190}]. 
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.3.3.
 2016-11-10 18:17:50 -05:00
Ricardo Wurmus b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode". 
This phase is no longer needed as upstream has merged the fix in the
current release.

* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
 2016-11-10 18:49:49 +01:00
Ricardo Wurmus 3f62fa2b81
gnu: inkscape: Use modify-phases syntax. 
* gnu/packages/inkscape.scm (inkscape)[arguments]: Use modify-phases
syntax.
 2016-11-10 18:49:48 +01:00
Marius Bakke 65d2f396f7
gnu: vim: Update to 8.0.0073. 
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0073.
 2016-11-10 17:30:08 +00:00
Ludovic Courtès 5970e8e248
container: Pass a list of <file-system> objects as things to mount. 
* gnu/build/linux-container.scm (mount-file-systems): 'mounts' is now a
list of <file-system> objects instead of a list of lists ("specs").
Add call to 'file-system->spec' as the argument to 'mount-file-system'.
(run-container, call-with-container): Adjust docstring accordingly.
* gnu/system/file-systems.scm (spec->file-system): New procedure.
* gnu/system/linux-container.scm (container-script)[script]: Call
'spec->file-system' inside gexp.
* guix/scripts/environment.scm (launch-environment/container): Remove
call to 'file-system->spec'.
* tests/containers.scm ("call-with-container, mnt namespace")
("call-with-container, mnt namespace, wrong bind mount"): Pass a list of
<file-system> objects.
 2016-11-10 18:01:44 +01:00
Ludovic Courtès 5e7eaccb14
linux-container: Use 'source-module-closure' when generating the script. 
* gnu/system/linux-container.scm (container-script)[script]: Use
'source-module-closure' in 'with-imported-modules' form.
 2016-11-10 18:01:44 +01:00
Ludovic Courtès 9e4e431e04
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to commit
324a2ba56c.
 2016-11-10 18:01:44 +01:00
Paul Garlick 1c79e0861a
gnu: gmsh: Update to 2.14.1 
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-11-10 18:57:57 +02:00
Marius Bakke 1b35fea19f
gnu: milkytracker: Update upstream location. 
* gnu/packages/music.scm (milkytracker)[source]: Update source uri.
[home-page]: Change to new domain.

Reported-by: ng0 <ng0@we.make.ritual.n0.is>
 2016-11-10 16:33:57 +00:00
Leo Famulari 8f9c89d13b
gnu: imagemagick: Update to 6.9.6-4. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-4.
 2016-11-10 11:33:20 -05:00
Tobias Geerinckx-Rice f34284abcb
gnu: claws-mail: Update to 3.14.1. 
* gnu/packages/mail.scm (claws-mail): Update to 3.14.1.
 2016-11-10 14:30:09 +01:00
Hartmut Goebel 99abcdbd9b
gnu: Add pdfposter. 
* gnu/packages/pdf.scm(pdfposter): New variable.
 2016-11-10 14:26:04 +01:00
Hartmut Goebel c68e8591d8
gnu: Add python2-pypdf. 
* gnu/packages/pdf.scm (python2-pypdf): New variable.
 2016-11-10 14:26:04 +01:00
Hartmut Goebel ad5a7d49c3
gnu: Add python-pypdf2. 
* gnu/packages/pdf.scm (python-pypdf2, python2-pypdf2): New variables.
 2016-11-10 14:26:04 +01:00
Ludovic Courtès 324a2ba56c
tests: Adjust 'url-fetch' mocks to TLS changes. 
This is a followup to bc3c41ce36.

* tests/cpan.scm ("cpan->guix-package"): Add #:verify-certificate?
parameter in 'url-fetch' mock.
* tests/cran.scm ("description->package"): Likewise.
 2016-11-10 11:58:43 +01:00
Ludovic Courtès 8033772363
gnu: gcc@5, gcc@6: Work around use of 'movabs' for /gnu/store strings. 
Partly addresses <http://bugs.gnu.org/24703>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/gcc-strmov-store-file-names.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-5)[sources](patches): Add it.
(gcc-6)[sources](patches): Add it.
 2016-11-09 21:24:44 +01:00
Ludovic Courtès c169d91e5a
lint: 'cve' checker catches 'tls-certificate-error'. 
Reported by Frederick Muriithi <fredmanglis@gmail.com>.

* guix/scripts/lint.scm (tls-certificate-error-string): New procedure.
(validate-uri): Use it.
(current-vulnerabilities*): Catch 'tls-certificate-error' and print a
warning.
 2016-11-09 21:24:44 +01:00
Thomas Danckaert 8bb115e0c6
gnu: Add kdevelop-pg-qt. 
* gnu/packages/kde.scm (kdevelop-pg-qt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-09 21:24:44 +01:00
Thomas Danckaert 5a16e1c04e
gnu: Add libkomparediff2. 
* gnu/packages/kde.scm (libkomparediff2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-09 21:24:44 +01:00
Ludovic Courtès 28791c1c8d
gnu: hidapi: Fix 'license'. 
* gnu/packages/libusb.scm (hidapi)[license]: Actually call
'non-copyleft'.
 2016-11-09 21:24:44 +01:00
Ludovic Courtès 624144e0e7
doc: Mention elpa.gnu.org package signatures. 
* doc/guix.texi (Invoking guix import): Document elpa.gnu.org
signatures.
 2016-11-09 21:24:43 +01:00
Efraim Flashner 65dccb3a86
gnu: Add vifm. 
* gnu/packages/vim.scm (vifm): New variable.
 2016-11-09 20:56:36 +02:00
Leo Famulari 0b34b58688
gnu: libxslt: Fix CVE-2016-4738. 
* gnu/packages/patches/libxslt-CVE-2016-4738.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[replacement]: New field.
(libxslt/fixed): New variable.
 2016-11-09 10:19:49 -05:00