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24868 Commits

Author SHA1 Message Date
Marius Bakke 6bb9645e57
gnu: Add python2-funcsigs. 
* gnu/packages/python.scm (python2-funcsigs): New variable.
 2017-10-19 00:16:51 +02:00
Marius Bakke a0fd9a3ca9
gnu: python-flake8: Update to 3.4.1. 
* gnu/packages/python.scm (python-flake8): Update to 3.4.1.
[source]: Remove obsolete snippet.
[arguments]: Override 'check' phase.
[propagated-inputs]: Remove PYTHON-PEP8. Add PYTHON-PYCODESTYLE and
PYTHON-SETUPTOOLS.
[native-inputs]: Change PYTHON-MOCK to PYTHON-MOCK-2. Remove PYTHON-NOSE. Add
PYTHON-PYTEST-BOOTSTRAP and PYTHON-PYTEST-RUNNER.
[properties]: Declare python2 variant.
* gnu/packages/python.scm (python-flake8)[propagated-inputs]: Add PYTHON2-ENUM
and PYTHON2-CONFIGPARSER.
 2017-10-19 00:16:51 +02:00
Marius Bakke a6c6a59faf
gnu: Add python2-enum. 
* gnu/packages/python.scm (python2-enum): New variable.
 2017-10-19 00:16:51 +02:00
Marius Bakke 3e6218b2dd
gnu: Fix pytest dependency cycle. 
* gnu/packages/python.scm (python-traceback2,
python-linecache2)[native-inputs]: Use PYTHON-PBR-MINIMAL instead of PYTHON-PBR.
 2017-10-19 00:16:51 +02:00
Marius Bakke 8f65361286
gnu: python-mock@2: Add dependency on python-six. 
* gnu/packages/python.scm (python-mock-2)[propagated-inputs]: Add PYTHON-SIX.
 2017-10-19 00:16:50 +02:00
Marius Bakke 31612e1cee
gnu: python-mccabe: Update to 0.6.1. 
* gnu/packages/python.scm (python-mccabe): Update to 0.6.1.
 2017-10-19 00:16:50 +02:00
Marius Bakke 0098b95064
gnu: python-pyflakes: Update to 1.5.0. 
* gnu/packages/python.scm (python-pyflakes): Update to 1.5.0.
 2017-10-19 00:16:50 +02:00
Marius Bakke f2ef961e59
gnu: python-pytest: Update to 3.2.3. 
* gnu/packages/python.scm (python-pytest): Update to 3.2.3.
[native-inputs]: Add PYTHON-SETUPTOOLS-SCM.
(python-pytest)[native-inputs]: Likewise.
(python2-pytest)[native-inputs]: Remove PYTHON2-ENUM34.
 2017-10-19 00:16:50 +02:00
Marius Bakke cf659519c9
gnu: python-setuptools-scm: Update to 1.15.6. 
* gnu/packages/python.scm (python-setuptools-scm): Update to 1.15.6.
 2017-10-19 00:16:50 +02:00
Marius Bakke 92b2101a56
gnu: python-pytest: Add a minimal variant for bootstrapping. 
* gnu/packages/python.scm (python-pytest-bootstrap, python2-pytest-bootstrap):
New variables.
(python-six, python-hypothesis, python-pytest-runner,
python-mccabe)[native-inputs]: Use PYTHON-PYTEST-BOOTSTRAP instead of
PYTHON-PYTEST.
 2017-10-19 00:16:50 +02:00
Marius Bakke 928da609b5
gnu: Remove python-pytest@2. 
* gnu/packages/python.scm (python-pytest): Update to 3.0.7.
[source]: Move substitution to ...
[arguments]: ... here. Incorporate phase from pytest-3.0.
[native-inputs]: Add PYTHON-HYPOTHESIS.
(python-pytest-3.0): Remove variable.
(python2-pytest-3.0): Rename to ...
(python2-pytest): ... this.
[native-inputs]: Add PYTHON2-ENUM34.
* gnu/packages/backup.scm (borg)[native-inputs]: Replace PYTHON-PYTEST-3.0
with PYTHON-PYTEST.
* gnu/packages/calendar.scm (khal): Likewise.
* gnu/packages/databases.scm (python-orator): Likewise.
* gnu/packages/python.scm (python-sphinx-1.6, python-sphinx-1.5.3,
python-pexpect, python-cryptography, python-pyopenssl, python-pytest-warnings,
python-pytest-capturelog, python-pytest-catchlog, python-marshmallow,
python-apispec, python-flasgger, python-pyjwt, python-grako,
python-honcho): Likewise.
* gnu/packages/web.scm (python-internetarchive): Likewise.
 2017-10-19 00:16:49 +02:00
Marius Bakke 8ed675a77f
gnu: python-six: Update to 1.11.0. 
* gnu/packages/python.scm (python-six): Update to 1.11.0.
 2017-10-19 00:16:49 +02:00
Marius Bakke 8dd339e5a6
gnu: python-six: Really enable tests. 
* gnu/packages/python.scm (python-six)[arguments]: Override 'check' phase.
 2017-10-19 00:16:49 +02:00
Marius Bakke 220b0ac38e
gnu: python-py: Update to 1.4.34. 
* gnu/packages/python.scm (python-py, python2-py): Update to 1.4.34.
 2017-10-19 00:16:49 +02:00
Marius Bakke b18226c3a1
gnu: python@3: Update to 3.6.3. 
* gnu/packages/patches/python-3.5-fix-tests.patch: Rename to ...
* gnu/packages/patches/python-3-fix-tests.patch: ... this. Adjust and disable
more tests.
* gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-2.7)[argument]: Patch '/bin/sh' in one more file.
(python-3.5): Rename to ...
(python-3.6): ... this. Update to 3.6.3.
[source](patches): Remove obsolete patch, adjust to patch rename.
(python-3): Use PYTHON-3.6.
 2017-10-19 00:16:49 +02:00
Marius Bakke 603a64920f
gnu: python@2: Update to 2.7.14. 
* gnu/packages/python.scm (python-2.7): Update to 2.7.14.
[source]: Add patch to skip two new tests.  Delete upstreamed patch.
* gnu/packages/patches/python-2.7-adjust-tests.patch: New file.
* gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2017-10-19 00:16:49 +02:00
Tobias Geerinckx-Rice 9d8796a516
Revert "gnu: python-pyatspi: Update to 2.26.0." 
This reverts commit 629f33e233, which breaks
orca@3.26.0.
 2017-10-18 23:58:08 +02:00
Ricardo Wurmus c0770feedd
gnu: f-seq: Fix location of commons-cli.jar. 
* gnu/packages/bioinformatics.scm (f-seq)[arguments]: Fix location of
commons-cli.jar in the wrapper script.
 2017-10-18 23:54:16 +02:00
Tobias Geerinckx-Rice 39427f9042
gnu: eog-plugins: Update to 3.26.1. 
* gnu/packages/gnome.scm (eog-plugins): Update to 3.26.1.
 2017-10-18 23:25:05 +02:00
Tobias Geerinckx-Rice 0a1a93b4aa
gnu: eog: Update to 3.26.1. 
* gnu/packages/gnome.scm (eog): Update to 3.26.1.
 2017-10-18 23:25:05 +02:00
Tobias Geerinckx-Rice 629f33e233
gnu: python-pyatspi: Update to 2.26.0. 
* gnu/packages/gnome.scm (python-pyatspi): Update to 2.26.0.
 2017-10-18 23:25:04 +02:00
Tobias Geerinckx-Rice 2a86fece22
gnu: btrfs-progs: Update to 4.13.3. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.13.3.
 2017-10-18 23:25:04 +02:00
Tobias Geerinckx-Rice 3031b138f5
gnu: hplip: Update to 3.17.10. 
* gnu/packages/cups.scm (hplip): Update to 3.17.10.
 2017-10-18 23:25:04 +02:00
Ludovic Courtès baa6790b4c
gnu: mailutils: Update to 3.3. 
* gnu/packages/mail.scm (mailutils): Update to 3.3.
[arguments]: Rename 'pre-build' phase to 'prepare-test-suite', and move
after 'check'.  Set 'HOME', and create ~/.mh_profile.
 2017-10-18 23:22:19 +02:00
Ludovic Courtès 8cb537acbc
gnu: perl-crypt-random-source: Use 'perl-license'. 
* gnu/packages/crypto.scm (perl-crypt-random-source)[license]: Change to
LICENSE:PERL-LICENSE.
 2017-10-18 23:22:19 +02:00
Stefan Reichör ef5c40aa2d
gnu: Add atool. 
* gnu/packages/compression.scm (atool): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-18 23:08:39 +02:00
Marius Bakke 07dfc89859
gnu: mupdf: Fix CVE-2017-15587. 
* gnu/packages/patches/mupdf-CVE-2017-15587.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (mupdf)[source](patches): Use it.
 2017-10-18 22:15:09 +02:00
Ricardo Wurmus dc1d06ba9e
gnu: python-protobuf: Update to 3.4.0. 
* gnu/packages/protobuf.scm (python-protobuf): Update to 3.4.0.
 2017-10-18 01:49:14 +02:00
Ricardo Wurmus bfd073319c
gnu: Add protobuf-c. 
* gnu/packages/protobuf.scm (protobuf-c): New variable.
 2017-10-18 01:49:14 +02:00
Ricardo Wurmus dd12d4aad0
gnu: protobuf: Update to 3.4.1. 
* gnu/packages/protobuf.scm (protobuf): Update to 3.4.1.
 2017-10-18 01:49:14 +02:00
Marius Bakke b2850fd170
gnu: nginx: Update to 1.12.2. 
* gnu/packages/web.scm (nginx): Update to 1.12.2.
 2017-10-17 21:05:54 +02:00
Marius Bakke 790d33c3bb
gnu: rofi: Update to 1.4.2. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.4.2.
 2017-10-17 21:05:54 +02:00
Ricardo Wurmus e059bdc9a7
gnu: r-tidyr: Update to 0.7.2. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.2.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus d8455fe146
gnu: r-tidyselect: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.2.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus c43db8da3a
gnu: r-rcpparmadillo: Update to 0.8.100.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.100.1.0.
[native-inputs]: Add r-knitr.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus 711e6cc5f4
gnu: r-data-table: Update to 1.10.4-2. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-2.
 2017-10-17 20:58:23 +02:00
Ricardo Wurmus 767ad2f7ad
gnu: r-chron: Update to 2.3-51. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-51.
 2017-10-17 20:58:23 +02:00
Ricardo Wurmus dc6cb56dec
gnu: r-dplyr: Update to 0.7.4. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.4.
 2017-10-17 20:58:23 +02:00
Ricardo Wurmus 7340fc5014
gnu: r-curl: Update to 3.0. 
* gnu/packages/web.scm (r-curl): Update to 3.0.
 2017-10-17 20:58:19 +02:00
Ricardo Wurmus 94b55ace14
gnu: axoloti-runtime: Update home page. 
* gnu/packages/axoloti.scm (axoloti-runtime)[home-page]: Use redirection
target URL.
 2017-10-17 17:32:20 +02:00
Ricardo Wurmus d991b05664
gnu: Add Axoloti. 
* gnu/packages/axoloti.scm: New file.
* gnu/packages/patches/libusb-for-axoloti.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
(GNU_SYSTEM_MODULES): Add module.
 2017-10-17 16:49:20 +02:00
Ricardo Wurmus 8843373322
gnu: java-jgit: Include properties files. 
* gnu/packages/version-control.scm (java-jgit)[arguments]: Add phase
"add-properties".
(java-jgit-4.2)[arguments]: Move modification of phases into
substitute-keyword-arguments clause.
 2017-10-17 16:49:20 +02:00
Ludovic Courtès c56c5e78ea
gnu: guix: Fix content hash. 
Fixes a mistake in bb4b9f7bf3, which was
due to the present of a hard link in my source tree, which confused
'git-predicate'...

* gnu/packages/package-management.scm (guix)[source]: Fix content hash.
 2017-10-17 13:24:02 +02:00
Ludovic Courtès 65dabe4e18
gnu: perf: Find 'tips.txt'. 
* gnu/packages/linux.scm (perf)[arguments]: Use "prefix", not
"DESTDIR".  This allows 'perf report' to find 'tips.txt'.
 2017-10-17 13:24:02 +02:00
Ludovic Courtès 1d484507dc
gnu: perf: Add dependency on libunwind and libnuma. 
* gnu/packages/linux.scm (perf)[inputs]: Add NUMACTL and LIBUNWIND.
 2017-10-17 13:24:01 +02:00
宋文武 5efa0e4d4f
guix: substitute: Report the last progress in the child process. 
Fixes <https://bugs.gnu.org/28756>.

* guix/utils.scm (filtered-port): Close the 'input' port for the current
process, and close it upon exit in the child process.
* guix/scripts/substitute.scm (progress-substitution): Display "\n\n" after
the reporter has finished.
 2017-10-17 19:00:35 +08:00
Ludovic Courtès bb4b9f7bf3
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix): Update to 357ab93.
 2017-10-17 11:24:54 +02:00
Roel Janssen 357ab93aac
gnu: Add python2-py2neo. 
* gnu/packages/python.scm (python2-py2neo): New variable.
 2017-10-17 09:59:35 +02:00
Roel Janssen 4640a11bee
gnu: Add python2-neo4j-driver. 
* gnu/packages/python.scm (python2-neo4j-driver): New variable.
 2017-10-17 09:59:06 +02:00
Leo Famulari 09748a3527
gnu: wpa-supplicant: Fix "KRACK" key reinstallation attacks [security fixes]. 
Fixes CVE-2017-{13078,13079,13080,13081,13082,13087,13088}.

See these announcements for more information:
https://w1.fi/security/2017-1/wpa-packet-number-reuse-with-replayed-messages.txt
https://www.krackattacks.com/

* gnu/packages/patches/wpa-supplicant-CVE-2017-13082.patch,
gnu/packages/patches/wpa-supplicant-fix-key-reuse.patch,
gnu/packages/patches/wpa-supplicant-fix-nonce-reuse.patch
gnu/packages/patches/wpa-supplicant-fix-zeroed-keys.patch,
gnu/packages/patches/wpa-supplicant-krack-followups.patch: New files.
* gnu/packages/admin.scm (wpa-supplicant-minimal)[source]: Use them.
* gnu/local.mk (dist_patch_DATA): Add them.
 2017-10-16 14:17:27 -04:00