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127 Commits

Author SHA1 Message Date
Efraim Flashner 723a6910ca gnu: glpk: Update to 4.58. 
* gnu/packages/maths.scm (glpk): Update to 4.58.
 2016-02-18 15:35:28 +02:00
Andreas Enge ec4130b7e7 gnu: gnuplot: Update to 5.0.2. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.2.
 2016-02-13 13:37:49 +01:00
Eric Bavier c7b08410de gnu: gmsh: Update to 2.11.0. 
* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
  [arguments]: Replace 'check phase.
 2016-01-06 10:49:23 -06:00
Fabian Harfert 45147b0caa gnu: Add xaos. 
* gnu/packages/maths.scm (xaos): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2015-12-31 11:29:43 +03:00
Ricardo Wurmus e22d4ca4c4 gnu: Add r-rcpparmadillo. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
 2015-12-21 16:05:37 +01:00
Ricardo Wurmus b15e47f9e6 gnu: Add armadillo. 
* gnu/packages/maths.scm (armadillo): New variable.
 2015-12-21 15:47:40 +01:00
Eric Bavier 97003b5ccc gnu: gnuplot: Update to 5.0.1. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.1.
  (native-inputs): 'texlive' -> 'texlive-bin'.
 2015-11-24 11:41:46 -06:00
Eric Bavier 9cf5245497 gnu: slepc: Update to 3.6.2. 
* gnu/packages/maths.scm (slepc): Update to 3.6.2.
  [arguments]: Append "/lib" to arpack configure flag.  Use 'inputs'
  rather than '%build-inputs' in 'configure phase.
 2015-11-20 11:58:40 -06:00
Eric Bavier 32187d99bb gnu: petsc: Update to 3.6.2. 
* gnu/packages/maths.scm (petsc): Update to 3.6.2.
 2015-11-20 11:58:40 -06:00
Eric Bavier c69fa4380a gnu: mumps: Update to 5.0.1. 
* gnu/packages/maths.scm (mumps): Update to 5.0.1.
 2015-11-20 11:58:40 -06:00
宋文武 a124bbd2f4 gnu: Adjust formatting as recommended by 'guix lint'. 
* gnu/packages/aidc.scm (barcode, qrencode),
  gnu/packages/bash.scm (bash, bash-completion),
  gnu/packages/busybox.scm (busybox),
  gnu/packages/cdrom.scm (cdparanoia),
  gnu/packages/cmake.scm (cmake),
  gnu/packages/conkeror.scm (conkeror),
  gnu/packages/cook.scm (cook),
  gnu/packages/curl.scm (curl),
  gnu/packages/docbook.scm (docbook-xsl),
  gnu/packages/enlightenment.scm (enlightenment),
  gnu/packages/games.scm (abbaye),
  gnu/packages/geeqie.scm (exiv2),
  gnu/packages/gimp.scm (gegl),
  gnu/packages/gl.scm (glu, freeglut, ftgl),
  gnu/packages/glib.scm (glib),
  gnu/packages/gnome.scm (orbit2, gconf, geocode-glib),
  gnu/packages/gstreamer.scm (gstreamer, gst-plugins-base),
  gnu/packages/linux.scm (util-linux),
  gnu/packages/lisp.scm (gcl, ecl),
  gnu/packages/maths.scm (gnuplot, hdf5),
  gnu/packages/ssh.scm (dropbear),
  gnu/packages/web.scm (json-c): Remove tabulations and trailing
  white spaces or reformat to fit within 80 columns.
* gnu/packages/audio.scm (aubio),
  gnu/packages/emacs.scm (emacs-s),
  gnu/packages/engineering.scm (geda-gaf),
  gnu/packages/games.scm (dosbox),
  gnu/packages/gnome.scm (gusb),
  gnu/packages/gtk.scm (gtk+),
  gnu/packages/guile.scm (guile-wisp),
  gnu/packages/hurd.scm (hurd-headers),
  gnu/packages/wm.scm (i3-wm): Adjust synopsis or description.
 2015-11-13 23:45:55 +08:00
Efraim Flashner 0534dd93ce gnu: gsl: Update to 2.1. 
* gnu/packages/maths.scm (gsl): Update to 2.1.
 2015-11-12 16:53:43 +02:00
Efraim Flashner 295fc0829b gnu: pspp: Use gtksourceview-2. 
* gnu/packages/maths.scm (pspp)[inputs]: Use gtksourceview-2.
 2015-11-10 13:58:25 +02:00
Efraim Flashner d8c97beb06 gnu: Add wcalc. 
* gnu/packages/maths.scm (wcalc): New variable.
 2015-11-08 23:01:50 +02:00
Efraim Flashner 19659accef gnu: octave: Upgrade to 4.0.0. 
* gnu/packages/maths.scm (octave): Update to 4.0.0.
 2015-11-08 18:44:06 +02:00
Efraim Flashner 552cb93c0a gnu: glpk: Update to 4.57. 
* gnu/packages/maths.scm (glpk): Update to 4.57.
 2015-11-08 16:27:39 +02:00
Efraim Flashner 5adbe65fec gnu: gsl: Enable tests. 
* gnu/packages/maths.scm (gsl)[arguments]: Enable tests for i686-linux.
 2015-11-02 21:04:18 +02:00
Efraim Flashner f133955122 gnu: gsl: Update to 2.0. 
* gnu/packages/maths.scm (gsl): Update to 2.0.
  [source]: Remove patches.
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove patches.
 2015-11-02 21:04:18 +02:00
Ricardo Wurmus bd0b4379b2 gnu: openblas: Make substitutable on MIPS. 
* gnu/packages/maths.scm (openblas)[arguments]: Make package
  substitutable when the system is MIPS.
 2015-10-30 17:47:54 +01:00
Ricardo Wurmus 8a637e79ed gnu: openblas: Set TARGET to SICORTEX on MIPS. 
* gnu/packages/maths.scm (openblas)[arguments]: Add "TARGET=SICORTEX" to
  make-flags when building for MIPS.
 2015-10-30 17:47:54 +01:00
Ricardo Wurmus 69851c59c7 gnu: openblas: Update to 0.2.15. 
* gnu/packages/maths.scm (openblas): Update to 0.2.15.
 2015-10-29 15:44:31 +01:00
Efraim Flashner cbe9505778 gnu: units: Update to 2.12. 
* gnu/packages/maths.scm (units): Update to 2.12.
 2015-10-20 09:41:54 +03:00
Andreas Enge 127cbd85c0 gnu: glpk: Update to 4.56. 
* gnu/packages/maths.scm (glpk): Update to 4.56.
 2015-10-02 20:07:17 +02:00
Andreas Enge 71923a91b1 gnu: openblas: Fix configure flags on armhf and take target system into account for cross building. 
* gnu/packages/maths.scm (openblas)[arguments]: Make package substitutable
  and enable runtime cpu detection only on x86 systems. Take the target
  system into account when cross compiling.
 2015-10-01 19:35:16 +02:00
Ludovic Courtès 75710da667 Merge branch 'master' into core-updates 2015-09-13 21:28:01 +02:00
Andreas Enge 194c7f95f1 gnu: Add FLANN. 
* gnu/packages/maths.scm (flann): New variable.
 2015-09-06 19:34:09 +02:00
Ludovic Courtès 96c4621056 gnu: Use 'install-file' instead of 'mkdir-p' and 'copy-file' in obvious cases. 
* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools,
  plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'.
* gnu/packages/check.scm (catch-framework): Likewise.
* gnu/packages/code.scm (global): Likewise.
* gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools):
  Likewise.
* gnu/packages/engineering.scm (fastcap, fasthenry): Likewise.
* gnu/packages/gnuzilla.scm (nss): Likewise.
* gnu/packages/guile.scm (guile-minikanren): Likewise.
* gnu/packages/java.scm (swt): Likewise.
* gnu/packages/make-bootstrap.scm (%static-binaries): Likewise.
* gnu/packages/maths.scm (lpsolve): Likewise.
* gnu/packages/mp3.scm (mpc123): Likewise.
* gnu/packages/ninja.scm (ninja): Likewise.
* gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise.
* gnu/packages/screen.scm (dtach): Likewise.
* gnu/packages/synergy.scm (synergy): Likewise.
* gnu/packages/textutils.scm (utf8proc): Likewise.
* gnu/packages/version-control.scm (git-test-sequence): Likewise.
* gnu/packages/wicd.scm (wicd): Likewise.
 2015-08-29 01:25:08 +02:00
Ludovic Courtès c01876b1af gnu: pspp: Update to 0.8.5. 
* gnu/packages/maths.scm (pspp)[source]: Update to 0.8.5.
  [native-inputs]: Add TEXINFO.
 2015-07-21 01:12:34 +02:00
Alex Kost e881752c39 gnu packages: Clean up synopses and descriptions. 
* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm,
  gnu/packages/backup.scm, gnu/packages/base.scm, gnu/packages/bittorrent.scm,
  gnu/packages/code.scm, gnu/packages/compression.scm,
  gnu/packages/databases.scm, gnu/packages/enchant.scm,
  gnu/packages/firmware.scm, gnu/packages/fonts.scm,
  gnu/packages/freedesktop.scm, gnu/packages/games.scm, gnu/packages/gd.scm,
  gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gsasl.scm,
  gnu/packages/gstreamer.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm,
  gnu/packages/haskell.scm, gnu/packages/language.scm,
  gnu/packages/lesstif.scm, gnu/packages/libreoffice.scm,
  gnu/packages/linux.scm, gnu/packages/llvm.scm, gnu/packages/maths.scm,
  gnu/packages/mcrypt.scm, gnu/packages/mit-krb5.scm, gnu/packages/mp3.scm,
  gnu/packages/ncdu.scm, gnu/packages/networking.scm, gnu/packages/ntp.scm,
  gnu/packages/ocaml.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
  gnu/packages/perl.scm, gnu/packages/pretty-print.scm,
  gnu/packages/pulseaudio.scm, gnu/packages/python.scm,
  gnu/packages/rdesktop.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm,
  gnu/packages/slang.scm, gnu/packages/slim.scm, gnu/packages/telephony.scm,
  gnu/packages/tls.scm, gnu/packages/tmux.scm, gnu/packages/tre.scm,
  gnu/packages/unrtf.scm, gnu/packages/version-control.scm,
  gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wget.scm,
  gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xiph.scm:
  Fix typos.  Trim long lines.  Add missing periods in the end of sentences.
  Use double spaces between sentences.  Remove trailing whitespaces.
 2015-07-18 13:05:01 +03:00
Alex Kost 7c125ce023 gnu packages: Avoid description lines with leading "(". 
* gnu/packages/curl.scm (curl): Reformat description to avoid a line
  beginning with "(" because such lines break font-lock highlighting
  in Emacs.
* gnu/packages/flashing-tools.scm (dfu-programmer): Likewise.
* gnu/packages/games.scm (gnugo): Likewise.
* gnu/packages/gnome.scm (json-glib): Likewise.
* gnu/packages/image.scm (jbig2dec): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/pdf.scm (mupdf): Likewise.
* gnu/packages/web.scm (perl-encode-locale): Likewise.
* gnu/packages/wordnet.scm (wordnet): Likewise.
* gnu/packages/xml.scm (libxml2):Likewise.
 2015-07-18 13:05:01 +03:00
Eric Bavier a17d45641b gnu: Add deal.II. 
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier a7f0141452 gnu: Add SLEPc. 
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
  (slepc-complex-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier 8c94c886f6 gnu: Add arpack-ng-openmpi. 
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 9a899cceab gnu: petsc: Upgrade to 3.6.0. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-06-29 15:34:36 -05:00
Eric Bavier cec86422b7 gnu: Add MUMPS. 
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
  (mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Eric Bavier aa75ad0097 gnu: Add METIS. 
* gnu/packages/maths.scm (metis): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier 700ff22219 gnu: Add p4est. 
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
 2015-06-29 15:34:36 -05:00
Eric Bavier e1ff597a64 gnu: Add ScaLAPACK. 
* gnu/packages/maths.scm (scalapack): New variable.
 2015-06-29 15:34:36 -05:00
Eric Bavier cf0ec6c46e gnu: scotch, pt-scotch: Build esmumps libraries. 
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
  phase.  Install esmumps libraries and headers in 'install phase.
  (pt-scotch)[arguments]: Build ptesmumps in 'build phase.  Add
  make parallelism.
 2015-06-29 15:34:36 -05:00
Eric Bavier d6602ee9d4 gnu: scotch, pt-scotch: Use modify-phases. 
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
 2015-06-29 15:34:36 -05:00
Eric Bavier 6c7985408f gnu: Update scotch to 6.0.4. 
* gnu/packages/maths.scm (scotch): Update to 6.0.4.
  [arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
  new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-06-29 15:34:36 -05:00
Ricardo Wurmus 19afbea136 gnu: Replace versioned gfortran inputs with just "gfortran". 
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
  "gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
   (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
   (octave)[native-inputs]: Likewise.
   (gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
  "gfortran".
 2015-06-25 18:28:54 +02:00
Mark H Weaver 180a93c72a gnu: gsl: Fix poly test on i686. 
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
  gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (gsl)[source]: Add patches.
 2015-06-20 01:38:56 -04:00
Ludovic Courtès 0004c5904c packages: Make 'location' field innate. 
* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
  'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
  Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
 2015-06-11 23:33:32 +02:00
Mark H Weaver 9aafbc0c13 gnu: Add wxmaxima. 
* gnu/packages/maths.scm (wxmaxima): New variable.
 2015-05-26 10:24:11 -04:00
Mark H Weaver 77af7b2407 gnu: maxima: Update to 5.36.1. 
* gnu/packages/patches/maxima-defsystem-mkdir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (maxima): Update to 5.36.1.  Add patch.
 2015-05-26 10:23:38 -04:00
Andreas Enge 7f18257bea gnu: Add lpsolve. 
* gnu/packages/maths.scm (lpsolve): New variable.
 2015-05-20 23:21:50 +02:00
Ricardo Wurmus 5b5ea159ac gnu: openblas: Disable DYNAMIC_ARCH on MIPS. 
* gnu/packages/maths.scm (openblas)[arguments]: Do not pass DYNAMIC_ARCH when
  building for MIPS.  Also make non-substitutable for MIPS.
 2015-05-20 13:30:24 +02:00
Ricardo Wurmus ecf28847b2 gnu: openblas: Update to 0.2.14. 
* gnu/packages/maths.scm (openblas): Update to 0.2.14.
 2015-05-15 13:53:30 +02:00
Eric Bavier 1ec78e9d71 gnu: octave: Add fftw, arpack, and glu inputs. 
* gnu/packages/maths.scm (octave)[inputs]: Add fftw, fftwf, arpack,
  and glu.
  [description]: Wrap to 80 columns.
 2015-05-11 10:10:00 -05:00