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42916 Commits (6e36c6ed8f56915c2f4aacb57ac9addefc726897)

Author SHA1 Message Date
Julien Lepiller a27ed8fd35
nls: Update 'fr' translation. 2019-04-13 14:50:46 +02:00
Nicolò Balzarotti 296ea15cf3
gnu: Add r-rex. 
* gnu/packages/cran.scm (r-rex): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-04-13 11:12:15 +02:00
Ricardo Wurmus 472af99950
gnu: Add marble-marcher. 
* gnu/packages/games.scm (marble-marcher): New variable.
 2019-04-13 11:06:33 +02:00
Mark H Weaver 5069baedb8
gnu: emacs: Update to 26.2. 
* gnu/packages/emacs.scm (emacs): Update to 26.2.
 2019-04-12 18:42:43 -04:00
Julien Lepiller ee6c4b62b8
gnu: opam: Update to 2.0.4. 
* gnu/packages/ocaml.scm (opam): Update to 2.0.4.
 2019-04-12 22:08:28 +02:00
Christopher Baines 81343b9a34
gnu: Fix uri for perl-template-toolkit. 
* gnu/packages/perl.scm (perl-template-toolkit)[source]: Fix origin uri.
 2019-04-12 20:56:21 +01:00
Ricardo Wurmus e768c37e3f
gnu: r-rpart: Update to 4.1-15. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-15.
 2019-04-12 19:27:39 +02:00
Ricardo Wurmus 7f290982dc
gnu: r-reticulate: Update to 1.12. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.12.
 2019-04-12 18:34:02 +02:00
Ludovic Courtès c8e070dad7
build: Fix typo in Makefile.am conditional. 
Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>
in <https://bugs.gnu.org/35138>.

This is a followup to a7ad4505b7.

* gnu/local.mk [!ENABLE_INSTALLER]: Use 'else', not 'elif'.
 2019-04-12 17:56:23 +02:00
Ludovic Courtès 13fd0a3087
install: Use a font with more glyphs on tty2. 
* gnu/system/install.scm (%installation-services): For
'console-font-service-type', use LatGrkCyr-8x16 on tty2.
 2019-04-12 17:56:23 +02:00
Ludovic Courtès c7dc604253
installer: Choosing a locale opens the translated manual on tty2. 
Suggested by Florian Pelz.

* gnu/system/install.scm (%installation-node-names): New variable.
(log-to-info): Expect the chosen locale as an argument.  Compute the
language, Info file name, and node name.  Install the locale.
(documentation-shepherd-service): Add 'locale' parameter to the 'start'
action and honor it.  Set GUIX_LOCPATH and TERM as environment variables
for the process.
* gnu/installer.scm (apply-locale): Use (gnu services herd).  Call
'stop-service' and 'start-service' with the chosen locale.
 2019-04-12 17:56:23 +02:00
Ludovic Courtès 126d4c12ce
install: Add standalone documentation service. 
* gnu/system/install.scm (log-to-info): Add 'tty' and 'user'
parameters.  Open the tty and change UIDs/GIDs.
(documentation-shepherd-service): New procedure.
(%documentation-users, documentation-service-type): New variables.
(%installation-services): Use it instead of 'mingetty-service'.
 2019-04-12 17:56:23 +02:00
Ludovic Courtès 96ef856528
doc: Strip the "Limitations" section. 
* doc/guix.texi (Limitations): Strip the paragraph about not being
production-ready.  Remove the number of packages.
 2019-04-12 17:56:23 +02:00
Danny Milosavljevic 16cb1c51ad
gnu: fc-host-tools: Fix fc-loadtool. 
* gnu/packages/embedded.scm (fc-host-tools)[arguments]<#:phases>
[patch-installation-paths]: Modify.
 2019-04-12 16:30:10 +02:00
Jelle Licht 21d56a8237
gnu: emacs-direnv: Update to 1.5.0. 
* gnu/packages/emacs-xyz.scm (emacs-direnv): Update to 1.5.0.
 2019-04-12 14:00:58 +02:00
Eric Bavier 89647ff1d4
gnu: idris: Run tests. 
* gnu/packages/patches/idris-test-no-node.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/idris.scm (idris)[origin]: Use it.
[native-inputs]: New field.
[arguments]: Remove "#:tests? #f".  Add custom 'check' phase after 'install'.
 2019-04-11 19:34:01 -05:00
Eric Bavier e16bc71015
gnu: idris: Enable FFI and GMP support. 
* gnu/packages/idris.scm (idris)[inputs]: Add ghc-libffi.
[arguments]: Add "-fFFI" and "-fGMP" to #:configure-flags.
 2019-04-11 19:34:01 -05:00
Eric Bavier fb038f32ae
gnu: Add ghc-libffi. 
* gnu/packages/haskell.scm (ghc-libffi): New variable.
 2019-04-11 19:34:00 -05:00
Eric Bavier a4df9ba4ec
gnu: idris: Upgrade to 1.3.1. 
* gnu/packages/idris.scm (idris): Upgrade to 1.3.1.
[arguments]: Remove 'update-constraints' phase.
 2019-04-11 19:34:00 -05:00
Danny Milosavljevic 0b30a1a072
build-system/linux-module: Configure module like the kernel. 
* guix/build/linux-module-build-system.scm (configure): New procedure.
(%standard-phases): Add "configure" phase.
 2019-04-12 00:46:08 +02:00
Danny Milosavljevic 55548cdc6a
gnu: rust: Enable parallel tests starting with 1.26. 
* gnu/packages/rust.scm (rust-1.26)[arguments]<#:phases>[check]: Enable
parallel tests.
 2019-04-12 00:26:29 +02:00
Danny Milosavljevic 88e13c2587
build-system/linux-module: Support module source versioning. 
* guix/build-system/linux-module.scm (make-linux-module-builder)
[native-inputs]: Add linux.
[arguments]<#:phases>[install]: Install "System.map" and "Module.symvers".
* guix/build/linux-module-build-system.scm (configure): Delete procedure.
(%standard-phases): Delete "configure" phase.
 2019-04-12 00:13:34 +02:00
Ricardo Wurmus b2521eed91
gnu: r-ggthemes: Update to 4.1.1. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.1.1.
 2019-04-11 23:37:25 +02:00
Ricardo Wurmus 5bd8ad8bde
gnu: r-plotly: Update to 4.9.0. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.9.0.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus c0fcbdfa9d
gnu: r-plotrix: Update to 3.7-5. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-5.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus eacfa685d7
gnu: r-devtools: Update to 2.0.2. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.0.2.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 6e95f0e153
gnu: r-backports: Update to 1.1.4. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.4.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 9fc1cdc928
gnu: r-rversions: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-rversions): Update to 1.1.0.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 67c6770d39
gnu: r-data-table: Update to 1.12.2. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.12.2.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus e9437c5b4a
gnu: r-rlang: Update to 0.3.4. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.4.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 00d14a4156
gnu: r-ggplot2: Update to 3.1.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.1.1.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 79d8fdcce3
gnu: r-nlme: Update to 3.1-139. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-139.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 9f2a87d1bf
gnu: r-pracma: Update to 2.2.5. 
* gnu/packages/maths.scm (r-pracma): Update to 2.2.5.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus be5385eb83
gnu: r-wgcna: Update to 1.67. 
* gnu/packages/cran.scm (r-wgcna): Update to 1.67.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus d1ed092e83
gnu: r-reinforcelearn: Update to 0.2.1. 
* gnu/packages/cran.scm (r-reinforcelearn): Update to 0.2.1.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 000b3ef96f
gnu: r-huge: Update to 1.3.2. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.2.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 4c920fbbd5
gnu: r-summarytools: Update to 0.9.3. 
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.3.
[propagated-inputs]: Add r-tibble.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus a108ef6209
gnu: r-remotes: Update to 2.0.4. 
* gnu/packages/cran.scm (r-remotes): Update to 2.0.4.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus 3517101521
gnu: r-usethis: Update to 1.5.0. 
* gnu/packages/cran.scm (r-usethis): Update to 1.5.0.
[propagated-inputs]: Add r-purrr, r-withr, and r-yaml.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus a26bd4718b
gnu: r-tinytex: Update to 0.12. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.12.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus 1235f0d3a2
gnu: r-broom: Update to 0.5.2. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.2.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus a315d49633
gnu: r-ddalpha: Update to 1.3.9. 
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.9.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus 1e0b0a2ec2
gnu: r-rvest: Update to 0.3.3. 
* gnu/packages/cran.scm (r-rvest): Update to 0.3.3.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus c4a50a8a47
gnu: r-genomicfeatures: Update to 1.34.8. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.8.
 2019-04-11 23:37:19 +02:00
Eric Bavier a6de569ea2
gnu: creduce: Upgrade to 2.8.0. 
* gnu/packages/debug.scm (creduce): Upgrade to 2.8.0.
[inputs]: Use llvm-6 and clang-6.  Remove perl-sys-cpu.
[arguments]: Use custom 'check phase.
 2019-04-11 12:17:01 -05:00
Ludovic Courtès 544265acba
colors: Add 'colorize-matches'. 
* guix/colors.scm (colorize-matches): New procedure.
(color-rules): Rewrite in terms of 'colorize-matches'.
 2019-04-11 18:18:13 +02:00
Ludovic Courtès 2569ef9dab
colors: Introduce a disjoint type and pre-compute ANSI escapes. 
* guix/colors.scm (color-table, color): Remove.
(<color>): New record type.
(print-color): New procedure.
(define-color-table, color): New macros.
(color-codes->ansi): New procedure.
(%reset): New variable.
(colorize-string): Rewrite accordingly.
(color-rules): Adjust accordingly.
* guix/status.scm (print-build-event): Adjust to new 'colorize-string'
interface.
* guix/ui.scm (%highlight-argument): Likewise.
(%warning-colors, %info-colors, %error-colors, %hint-colors)
(%highlight-colors): Remove.
(%warning-color, %info-color, %error-color, %hint-color)
(%highlight-color): New variables.
 2019-04-11 18:18:13 +02:00
Ludovic Courtès c1df77e215
guix gc: '-d' does not attempt to delete non-user-owned roots. 
* guix/scripts/gc.scm (guix-gc)[delete-generations]: Limit to user-owned
roots, unless we're running as root.
 2019-04-11 18:18:13 +02:00
Ricardo Wurmus c2f6f4e500
gnu: Add python2-checkm-genome. 
* gnu/packages/bioinformatics.scm (python2-checkm-genome): New variable.
 2019-04-11 17:54:57 +02:00
Ricardo Wurmus 4fa16c9ae6
gnu: Add tensorflow. 
* gnu/packages/machine-learning.scm (tensorflow): New variable.
 2019-04-11 17:54:57 +02:00