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8649 Commits

Author SHA1 Message Date
Ben Woodcroft 6f04e51560 gnu: vsearch: Restrict supported systems to x86_64-linux. 
* gnu/packages/bioinformatics.scm (vsearch)[supported-systems]: Restrict
  to x86_64-linux.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2015-10-03 13:59:11 +02:00
Andreas Enge b8d953cbbd gnu: libmicrohttpd: Update to 0.9.44. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.44.
 2015-10-02 23:30:20 +02:00
Andreas Enge 4d835808e4 gnu: eigen: Update to 3.2.6. 
* gnu/packages/algebra.scm (eigen): Update to 3.2.6.
 2015-10-02 23:13:20 +02:00
Andreas Enge 5768893ad1 gnu: valgrind: Enable the arm architecture during configuration. 
* gnu/packages/patches/valgrind-enable-arm.patch: New file.
* gnu/packages/valgrind.scm (valgrind)[source]: Add patch.
* gnu-system.am (dist_patch_DATA): Enable patch.
 2015-10-02 21:16:02 +02:00
Andreas Enge 2f8fee0623 gnu: valgrind: Update to 3.11.0. 
* gnu/packages/valgrind.scm (valgrind): Update to 3.11.0.
  [source]: Remove the patches
* gnu/packages/patches/valgrind-glibc-2.22.patch,
  gnu/packages/patches/valgrind-linux-libre-4.x.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Unregister the patches.
 2015-10-02 20:26:45 +02:00
Andreas Enge 127cbd85c0 gnu: glpk: Update to 4.56. 
* gnu/packages/maths.scm (glpk): Update to 4.56.
 2015-10-02 20:07:17 +02:00
Mark H Weaver 93bd4a37ee gnu: freeimage: Add fix for CVE-2015-0852. 
* gnu/packages/patches/freeimage-CVE-2015-0852.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/image.scm (freeimage)[source]: Add patch.
 2015-10-02 12:53:21 -04:00
Mark H Weaver bcc09d9ac1 gnu: freeimage: Update to 3.17.0. 
* gnu/packages/image.scm (freeimage): Update to 3.17.0.
  [source]: Use 'string-concatenate' in URI computation.
 2015-10-02 12:53:21 -04:00
Mark H Weaver b927058237 gnu: openjpeg-2.x: Add fix for use-after-free in opj_j2k_write_mco. 
* gnu/packages/patches/openjpeg-use-after-free-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/image.scm (openjpeg, openjpeg-2.0)[source]: Add patch.
  [home-page]: Update.
 2015-10-02 12:33:26 -04:00
Mark H Weaver 9ab5ea449e gnu: clipper: Add 'file-name' field to source origin. 
* gnu/packages/bioinformatics.scm (clipper)[source]: Add file-name.
 2015-10-02 10:55:57 -04:00
Andreas Enge 71a4b2ab21 gnu: orc: Update to 0.4.24. 
* gnu/packages/gstreamer.scm (orc): Update to 0.4.24.
 2015-10-02 09:51:55 +02:00
Ben Woodcroft 02a8a1876a gnu: Add python-xlrd. 
* gnu/packages/python.scm (python-xlrd, python2-xlrd): New variables.

Signed-off-by: Mathieu Lirzin <mthl@openmailbox.org>
 2015-10-01 23:45:32 +02:00
Efraim Flashner bd60e4e2ef gnu: powertop: Fix url. 
* gnu/packages/linux.scm (powertop): Fixed incorrect url.
 2015-10-01 22:53:12 +03:00
Andreas Enge 71923a91b1 gnu: openblas: Fix configure flags on armhf and take target system into account for cross building. 
* gnu/packages/maths.scm (openblas)[arguments]: Make package substitutable
  and enable runtime cpu detection only on x86 systems. Take the target
  system into account when cross compiling.
 2015-10-01 19:35:16 +02:00
Efraim Flashner cfd745d6bb gnu: powertop: Update to 2.7. 
* gnu/packages/linux.scm (powertop): Update to 2.7.
  [arguments]: Add "pciutils" to inputs.
 2015-10-01 19:39:34 +03:00
Efraim Flashner 88377435ca gnu: graphviz: Add "doc" output. 
* gnu/packages/graphviz.scm (graphviz)[outputs, arguments]: New fields.
 2015-10-01 19:39:34 +03:00
Efraim Flashner 64cb2de5d0 gnu: graphviz: Update to 2.38.0. 
* gnu/packages/graphviz.scm (graphviz): Update to 2.38.0.
 2015-10-01 19:39:34 +03:00
Efraim Flashner 9e125175fc gnu: mpg123: Update to 1.22.4. 
* gnu/packages/mp3.scm (mpg123): Update to 1.22.4.
 2015-10-01 19:39:34 +03:00
Efraim Flashner b2666de0fb gnu: mpv: Update to 0.11.0. 
* gnu/packages/video.scm (mpv): Update to 0.11.0.
 2015-10-01 19:39:33 +03:00
Efraim Flashner d1ae7233e3 gnu: youtube-dl: Update to 2015.09.28. 
* gnu/packages/video.scm (youtube-dl): Update to 2015.09.28.
 2015-10-01 19:39:33 +03:00
Efraim Flashner b4eba7b088 gnu: terminology: Update to 0.9.1. 
* gnu/packages/enlightenment.scm (terminology): Update to 0.9.1.
 2015-10-01 19:39:33 +03:00
Efraim Flashner b0b3ebf09f gnu: enlightenment: Update to 0.19.11. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.19.11.
 2015-10-01 19:39:33 +03:00
宋文武 d032d9652f gnu: Add GNU Unifont. 
* gnu/packages/fonts.scm (font-gnu-unifont): New variable.
 2015-10-01 21:27:44 +08:00
David Thompson b4aa6d3dcc gnu: shroud: Update to 0.1.1. 
* gnu/packages/password-utils.scm (shroud): Update to 0.1.1.
 2015-10-01 08:57:14 -04:00
David Thompson dd24e9063f gnu: Add shroud. 
* gnu/packages/password-utils.scm (shroud): New variable.
 2015-10-01 07:35:16 -04:00
宋文武 b98ee8b7e1 gnu: xterm: Update to 320. 
* gnu/packages/xorg.scm (xterm): Update to 320.
 2015-10-01 17:50:21 +08:00
Ludovic Courtès fde1783087 download: Check whether HORIZONTAL ELLIPSIS can be encoded. 
* guix/build/download.scm (ellipsis): New procedure.
  (store-path-abbreviation): Use it.
 2015-10-01 11:28:58 +02:00
Ludovic Courtès 64c9834716 gnu: emacs: Claim 'INFOPATH'. 
Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>.

* gnu/packages/emacs.scm (emacs)[native-search-path]: New field.
 2015-10-01 11:28:19 +02:00
Ben Woodcroft a2950fa4dc gnu: Add vsearch. 
* gnu/packages/bioinformatics.scm (vsearch): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-10-01 10:51:28 +02:00
Ben Woodcroft aae2b445a4 gnu: Add cityhash. 
* gnu/packages/textutils.scm (cityhash): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-10-01 10:36:11 +02:00
Mark H Weaver b73547e179 gnu: linux-libre: Update to 4.2.2. 
* gnu/packages/linux.scm (linux-libre): Update to 4.2.2.
 2015-09-30 12:48:40 -04:00
Ludovic Courtès 997f86e96b gnu: pixman: Update to 0.32.8. 
* gnu/packages/xdisorg.scm (pixman): Update to 0.32.8.
* gnu/packages/patches/pixman-pointer-arithmetic.patch: Remove.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
 2015-09-30 17:19:27 +02:00
Ludovic Courtès 46bd6edd5a gnu: libc: Look for locale data under /run/current-system/locale/X.Y. 
* gnu/packages/base.scm (glibc)[arguments]: Append VERSION to
  'libc_cv_localedir'.
* gnu/system/locale.scm (localedef-command): Write to the sub-directory
  called (package-version libc) in #$output.
  (locale-directory): Create said directory.
* doc/guix.texi (Locales): Mention the per-version sub-directory.
 2015-09-30 17:06:40 +02:00
Julian Graham c24fff615b gnu: Add gzochi. 
* gnu/packages/game-development.scm (gzochi): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2015-09-29 23:56:37 +02:00
Jeff Mickey 820dc3f5f1 gnu: Add pigz. 
* gnu/packages/compression.scm (pigz): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2015-09-29 23:40:10 +02:00
Ludovic Courtès 0b1f0d36b1 gnu: lsh: 'lsh-authorize' uses the absolute file name of 'sexp-conv'. 
Fixes <http://bugs.gnu.org/21516>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages/lsh.scm (lsh)[arguments]: In 'pre-configure' phase,
  change 'src/lsh-authorize' to use the absolute file name of
  'sexp-conv'.
 2015-09-28 22:54:04 +02:00
Ludovic Courtès 30d9aa5422 guix gc: Add '--list-failures' and '--clear-failures'. 
Suggested by Mark H Weaver <mhw@netris.org>.

* guix/scripts/gc.scm (show-help, %options): Add --list-failures and
  --clear-failures.
  (guix-gc): Honor them.
* doc/guix.texi (Invoking guix gc): Document them.
  (Invoking guix-daemon): Mention them.
 2015-09-28 22:54:04 +02:00
Ludovic Courtès 16748d8015 store: Add 'query-failed-paths' and 'clear-failed-paths' RPCs. 
Suggested by Mark H Weaver <mhw@netris.org>.

* guix/store.scm (query-failed-paths, clear-failed-paths): New
  procedures.
* tests/guix-daemon.sh: Add test with daemon started with
  --cache-failures.
 2015-09-28 22:54:04 +02:00
Ludovic Courtès df0a3b7f9e tests: 'open-connection-for-tests' takes an optional parameter. 
* guix/tests.scm (open-connection-for-tests): Add optional FILE
  parameter; pass it to 'open-connection'.
 2015-09-28 22:53:59 +02:00
Pjotr Prins b2bddb07ef gnu: Add bio-blastxmlparser. 
* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
 2015-09-28 12:22:47 +02:00
Vicente Vera Parra 0e4e03f884 gnu: Add r-data.table. 
* gnu/packages/statistics.scm (r-data.table): New variable.
 2015-09-28 11:07:23 +02:00
Vicente Vera Parra 91312ebed4 gnu: Add r-chron. 
* gnu/packages/statistics.scm (r-chron): New variable.
 2015-09-28 11:07:10 +02:00
Ricardo Wurmus ea5616e0e6 gnu: Add r-servr. 
* gnu/packages/web.scm (r-servr): New variable.
 2015-09-28 10:35:19 +02:00
Ricardo Wurmus 21d3770e02 gnu: Add r-jsonlite. 
* gnu/packages/web.scm (r-jsonlite): New variable.
 2015-09-28 10:35:19 +02:00
Ricardo Wurmus a359c9c15c gnu: Add r-httpuv. 
* gnu/packages/web.scm (r-httpuv): New variable.
 2015-09-28 10:35:19 +02:00
Mark H Weaver 36743e71af doc: Fix spelling. 
This is a followup to commit ba7d6c763c.

* doc/guix.texi (Synopses and Descriptions): Fix spelling.
 2015-09-28 02:09:59 -04:00
Mathieu Lirzin cd8b7cfb3f lint: Fix 'check-texinfo-markup'. 
Fixes a regression introduced in 5d8d8f3.

* guix/scripts/lint.scm (check-description-style): When no exception is
  thrown in 'check-texinfo-markup', return the rendered description.
 2015-09-28 00:23:12 +02:00
Mathieu Lirzin ba7d6c763c doc: Add more recommandations for package descriptions. 
* doc/guix.texi (Synopses and Descriptions): Warn about special
  characters in Texinfo.  Indicate how to help the translators.
 2015-09-28 00:22:12 +02:00
Mathieu Lirzin ae05b1856f gnu: Add arandr. 
* gnu/packages/xdisorg.scm (arandr): New variable.
 2015-09-28 00:19:11 +02:00
Andreas Enge aab56ab7da gnu: avidemux: Build with Qt 5 instead of Qt 4. 
* gnu/packages/video.scm (avidemux)[inputs]: Replace qt-4 by qt.
  [arguments]: Add build flag.
 2015-09-27 00:06:30 +02:00