e2fee46f04
gnu: r-afex: Update to 0.23-0.
...
* gnu/packages/cran.scm (r-afex): Update to 0.23-0.
2019-03-07 23:52:40 +01:00
f18ca07eef
gnu: r-lmertest: Update to 3.1-0.
...
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-0.
2019-03-07 23:52:40 +01:00
91f0b745f6
gnu: r-ks: Update to 1.11.4.
...
* gnu/packages/cran.scm (r-ks): Update to 1.11.4.
[propagated-inputs]: Remove r-misc3d.
2019-03-07 23:52:40 +01:00
0b14b100a2
gnu: r-tidytree: Update to 0.2.4.
...
* gnu/packages/cran.scm (r-tidytree): Update to 0.2.4.
2019-03-07 23:52:39 +01:00
4bc5d45144
gnu: r-bigrquery: Update to 1.1.0.
...
* gnu/packages/cran.scm (r-bigrquery): Update to 1.1.0.
[propagated-inputs]: Add r-bit64.
2019-03-07 23:52:39 +01:00
8a05d17037
gnu: r-gmp: Update to 0.5-13.4.
...
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.4.
2019-03-07 23:52:39 +01:00
7706a98cda
gnu: r-huge: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-huge): Update to 1.3.0.
[propagated-inputs]: Add r-rcpp and r-rcppeigen; remove r-lattice.
2019-03-07 23:52:39 +01:00
f59cdeaf25
gnu: r-igraph: Update to 1.2.4.
...
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.
2019-03-07 23:52:39 +01:00
ed494a0acd
gnu: r-dplyr: Update to 0.8.0.1.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.8.0.1.
[native-inputs]: Move r-rcpp and r-bh from here...
[propagated-inputs]: ...to here; remove r-bindrcpp.
2019-03-07 23:52:39 +01:00
6caf80fbaf
gnu: r-lme4: Update to 1.1-21.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-21.
[native-inputs]: Move r-rcpp and r-rcppeigen from here...
[propagated-inputs]: ...to here; add r-boot.
2019-03-07 23:52:39 +01:00
34a98f79d7
gnu: r-forcats: Update to 0.4.0.
...
* gnu/packages/statistics.scm (r-forcats): Update to 0.4.0.
[propagated-inputs]: Add r-ellipsis.
2019-03-07 23:52:39 +01:00
6a0a2342dd
gnu: r-r6: Update to 2.4.0.
...
* gnu/packages/statistics.scm (r-r6): Update to 2.4.0.
2019-03-07 23:52:38 +01:00
4b16c00e9a
gnu: r-formatr: Update to 1.6.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.6.
2019-03-07 23:52:38 +01:00
1f7a76a0c1
gnu: r-evaluate: Update to 0.13.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.13.
2019-03-07 23:52:38 +01:00
48a4b775b9
gnu: r-mgcv: Update to 1.8-27.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-27.
2019-03-07 23:52:38 +01:00
71fe7f9d21
gnu: r-stringi: Update to 1.3.1.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.3.1.
2019-03-07 23:52:38 +01:00
605fcf8a23
gnu: r-stringr: Update to 1.4.0.
...
* gnu/packages/statistics.scm (r-stringr): Update to 1.4.0.
2019-03-07 23:52:38 +01:00
17abcd521a
gnu: r-ranger: Update to 0.11.2.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.11.2.
2019-03-07 23:52:38 +01:00
9066534d4c
gnu: r-openssl: Update to 1.2.2.
...
* gnu/packages/statistics.scm (r-openssl): Update to 1.2.2.
2019-03-07 23:52:38 +01:00
a1d9387d82
gnu: r-catools: Update to 1.17.1.2.
...
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.2.
2019-03-07 23:52:37 +01:00
4fadef3ba0
gnu: r-xml: Update to 3.98-1.19.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.19.
2019-03-07 23:52:37 +01:00
bc7895e1cf
gnu: r-flexmix: Update to 2.3-15.
...
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-15.
2019-03-07 23:52:37 +01:00
6be62a5a72
gnu: r-irlba: Update to 2.3.3.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.3.
2019-03-07 23:52:37 +01:00
b22a20405a
gnu: r-registry: Update to 0.5-1.
...
* gnu/packages/statistics.scm (r-registry): Update to 0.5-1.
2019-03-07 23:52:37 +01:00
3db71d065c
gnu: r-r-utils: Update to 2.8.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.8.0.
2019-03-07 23:52:37 +01:00
21886e730b
gnu: r-r-rsp: Update to 0.43.1.
...
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.1.
2019-03-07 23:52:37 +01:00
ed4100dc96
gnu: r-mvtnorm: Update to 1.0-10.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-10.
2019-03-07 23:52:37 +01:00
ebd37b49f9
gnu: r-tidyr: Update to 0.8.3.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.3.
2019-03-07 23:52:37 +01:00
84840deb95
gnu: r-purrr: Update to 0.3.1.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.1.
2019-03-07 23:52:36 +01:00
b58220f599
gnu: r-pbapply: Update to 1.4-0.
...
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-0.
2019-03-07 23:52:36 +01:00
e51096b2ea
gnu: r-vgam: Update to 1.1-1.
...
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-1.
2019-03-07 23:52:36 +01:00
aeb11b7549
gnu: r-ggthemes: Update to 4.1.0.
...
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.1.0.
2019-03-07 23:52:36 +01:00
d235cf7268
gnu: r-shiny: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-shiny): Update to 1.2.0.
[arguments]: Adjust processing of minified JavaScript.
2019-03-07 23:52:36 +01:00
83ef38b038
gnu: r-epi: Update to 2.35.
...
* gnu/packages/cran.scm (r-epi): Update to 2.35.
2019-03-07 23:52:36 +01:00
75cbc80037
gnu: r-network: Update to 1.14-377.
...
* gnu/packages/cran.scm (r-network): Update to 1.14-377.
[propagated-inputs]: Add r-magrittr and r-tibble.
2019-03-07 23:52:36 +01:00
fadc49c6e5
gnu: r-vegan: Update to 2.5-4.
...
* gnu/packages/cran.scm (r-vegan): Update to 2.5-4.
2019-03-07 23:52:36 +01:00
d1c2fd8eeb
gnu: r-future-apply: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-future-apply): Update to 1.2.0.
2019-03-07 23:52:36 +01:00
6e8b38d3e8
gnu: Add r-furrr.
...
* gnu/packages/cran.scm (r-furrr): New variable.
2019-03-07 23:52:35 +01:00
f0bff69873
gnu: Add r-survey.
...
* gnu/packages/cran.scm (r-survey): New variable.
2019-03-07 23:52:35 +01:00
dab3e92c94
gnu: Add r-magick.
...
* gnu/packages/cran.scm (r-magick): New variable.
2019-03-07 23:52:35 +01:00
3f22a115bd
gnu: Add r-ellipsis.
...
* gnu/packages/cran.scm (r-ellipsis): New variable.
2019-03-07 23:52:35 +01:00
d748cb5f47
gnu: Add autorandr.
...
* gnu/packages/xdisorg.scm (autorandr): New variable.
2019-03-07 22:23:38 +01:00
945723be97
gnu: php: Update to 7.3.3.
...
* gnu/packages/php.scm (php): Update to 7.3.3.
2019-03-07 21:18:30 +01:00
dcf4d01f30
gnu: libmicrohttpd: Enable parallel tests.
...
* gnu/packages/gnunet.scm (libmicrohttpd)[arguments]: Don't disable
parallel tests.
2019-03-07 22:00:53 +02:00
c4bfce994e
gnu: libmicrohttpd: Update to 0.9.63.
...
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.63.
[arguments]: Remove custom phase to add missing LDFLAGS.
2019-03-07 22:00:53 +02:00
0ef54303f3
gnu: c-graph: Update to 2.0.1.
...
* gnu/packages/maths.scm (c-graph): Update to 2.0.1.
2019-03-07 22:00:52 +02:00
0ae735bcc8
activation: Build account databases with (gnu build accounts).
...
* gnu/build/activation.scm (enumerate, current-users, current-groups)
(add-group, add-user, modify-user, ensure-user): Remove.
(activate-users+groups)[touch, activate-user]: Remove.
[make-home-directory]: New procedure.
Rewrite in terms of 'user+group-databases', 'write-group', etc.
* gnu/build/install.scm (directives): Remove "/root".
* gnu/system/shadow.scm (account-activation): Remove (setenv "PATH" ...)
expression, which is now unneeded.
2019-03-07 20:05:09 +01:00
ec600e4544
Add (gnu build accounts).
...
* gnu/build/accounts.scm, tests/accounts.scm: New files.
* Makefile.am (SCM_TESTS): Add tests/accounts.scm.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add build/accounts.scm.
2019-03-07 20:05:09 +01:00
6061d01512
activation: Operate on <user-account> and <user-group> records.
...
* gnu/system/accounts.scm (sexp->user-group, sexp->user-account): New
procedures.
* gnu/system/shadow.scm (account-activation): Call them in the arguments
to 'activate-users+groups'.
(account-shepherd-service): Likewise.
* gnu/build/activation.scm (activate-users+groups): Expect a list of
<user-account> and a list of <user-group>. Replace uses of 'match' on
tuples with calls to record accessors.
(activate-user-home): Likewise.
2019-03-07 20:05:09 +01:00
f6f67b87c0
system: Add (gnu system accounts).
...
The (gnu system accounts) module is meant to be used both on the build-
and on the host-side.
* gnu/system/shadow.scm <top level>: Call 'default-shell'.
(<user-account>, <user-group>): Move to...
* gnu/system/accounts.scm: ... here. New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add system/accounts.scm.
2019-03-07 20:04:02 +01:00
b60e9fb82f
gnu: fuseiso: Fix typo in description.
...
* gnu/packages/linux.scm (fuseiso)[description]: Fix typo.
2019-03-07 17:12:46 +01:00
1e1142d8cb
gnu: Add nullmailer.
...
* gnu/packages/mail.scm (nullmailer): New public variable.
2019-03-07 15:39:46 +01:00
3189fad217
gnu: neovim: Let build phase return #T.
...
* gnu/packages/vim.scm (neovim)[arguments]: Return #T from "patch-tic" phase.
2019-03-07 13:39:45 +01:00
3b296475bf
gnu: cd-hit: Support longer sequences.
...
* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make
flags.
2019-03-07 13:38:01 +01:00
237ee6f2b2
gnu: python2-fastlmm: Disable tests.
...
* gnu/packages/machine-learning.scm (python2-fastlmm)[arguments]: Disable
tests.
2019-03-07 13:37:58 +01:00
9fd6ad3e35
gnu: wireguard: Update to 0.0.20190227.
...
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190227.
[arguments]: Disable tests.
2019-03-07 12:23:43 +01:00
9cb4bda222
gnu: nftables: Update to 0.9.0.
...
* gnu/packages/linux.scm (nftables): Update to 0.9.0.
[arguments]: Add "--disable-man-doc" configure flag.
2019-03-07 12:08:21 +01:00
ccf2446730
gnu: minetest: Update to 5.0.0.
...
* gnu/packages/games.scm (minetest-data, minetest): Update to 5.0.0.
2019-03-07 05:31:19 -05:00
0a10abf73e
gnu: neovim: Fix #34616 .
...
This fixes a segmentation fault in neovim, where an error return value
is passed in as a pointer.
* gnu/packages/vim.scm (neovim)[arguments](phases): Add 'patch-tic phase.
2019-03-07 11:08:31 +01:00
2702aa9136
gnu: unibilium: Update to 2.0.0.
...
* gnu/packages/terminal.scm (unibilium): Update to 2.0.0.
[native-inputs]: Add perl.
2019-03-07 09:48:03 +01:00
abe6e670d3
gnu: sane-backends-minimal: Fix USB support.
...
* gnu/packages/scanner.scm (sane-backends-minimal)[inputs]: Replace
libusb-compat with libusb.
[arguments]: Disable tests that require USB access.
2019-03-07 02:13:26 +01:00
274fa49100
gnu: linux-libre: Update to 5.0.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.
(%linux-libre-hash): Update hash.
(%linux-libre-4.20-patches): Rename to ...
(%linux-libre-5.0-patches): ... this.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-5.0-patches instead of %linux-libre-4.20-patches.
* gnu/packages/aux-files/linux-libre/4.20-arm.conf,
gnu/packages/aux-files/linux-libre/4.20-arm64.conf,
gnu/packages/aux-files/linux-libre/4.20-i686.conf,
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/5.0-arm.conf,
gnu/packages/aux-files/linux-libre/5.0-arm64.conf,
gnu/packages/aux-files/linux-libre/5.0-i686.conf,
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
2019-03-06 17:51:55 -05:00
9870f3ec61
gnu: linux-libre@4.19: Update to 4.19.27.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.27.
(%linux-libre-4.19-hash): Update hash.
2019-03-06 17:51:12 -05:00
1b1a6c028b
gnu: linux-libre@4.14: Update to 4.14.105.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.105.
(%linux-libre-4.14-hash): Update hash.
2019-03-06 17:50:21 -05:00
7850fa891d
gnu: linux-libre@4.9: Update to 4.9.162.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.162.
2019-03-06 17:49:26 -05:00
fc240e7e05
gnu: synthv1: Update to 0.9.5.
...
* gnu/packages/music.scm (synthv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
6ef147bd1d
gnu: drumkv1: Update to 0.9.5.
...
* gnu/packages/music.scm (drumkv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
cf6195906c
gnu: samplv1: Update to 0.9.5.
...
* gnu/packages/music.scm (samplv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
4b159add6f
gnu: padthv1: Update to 0.9.5.
...
* gnu/packages/music.scm (padthv1): Update to 0.9.5.
2019-03-06 22:26:07 +01:00
d935f69b11
gnu: yoshimi: Update to 1.5.10.2.
...
* gnu/packages/music.scm (yoshimi): Update to 1.5.10.2.
2019-03-06 22:26:06 +01:00
01d8a2a3d9
gnu: electron-cash: Update to 3.3.6.
...
* gnu/packages/finance (electron-cash): Update to 3.3.6.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-06 16:06:26 -05:00
307603dd88
gnu: electrum: Update to 3.3.4.
...
* gnu/packages/finance (electrum): Update to 3.3.4.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-06 16:06:26 -05:00
11599cff1e
gnu: diffoscope: Update to 113.
...
* gnu/packages/package-management (diffoscope): Update to 113.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-06 22:05:07 +01:00
61e265d294
gnu: Add multitime.
...
* gnu/packages/benchmark.scm (multitime): New variable.
2019-03-06 21:55:14 +01:00
8035819f4c
gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here.
2019-03-06 21:43:33 +01:00
d56df35a25
gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
2019-03-06 21:42:39 +01:00
f8780e96ff
gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): ...to here.
2019-03-06 21:41:48 +01:00
3a08940e1a
gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here.
2019-03-06 21:35:20 +01:00
7bc5d1b0e1
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Move from here...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
...to here.
2019-03-06 21:33:17 +01:00
13dabd6947
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
...to here.
2019-03-06 21:31:41 +01:00
0c792ffbd1
gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
2019-03-06 21:30:30 +01:00
b7d93cf508
gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here.
2019-03-06 21:29:20 +01:00
c3adc83054
gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here.
2019-03-06 21:26:54 +01:00
5acb9052cf
gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here.
2019-03-06 21:25:18 +01:00
fe0b76e215
gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here.
2019-03-06 21:23:42 +01:00
40a6505711
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
...to here.
2019-03-06 21:23:20 +01:00
66e35ce63b
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Move
from here...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to
here.
2019-03-06 21:16:33 +01:00
bfb93b4889
gnu: r-geneplotter: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-geneplotter): Move from here...
* gnu/packages/bioconductor.scm (r-geneplotter): ...to here.
2019-03-06 21:13:38 +01:00
9f8698ad1c
gnu: Add guile-stis-parser.
...
* gnu/packages/guile-xyz.scm (guile-stis-parser): New variable.
2019-03-06 21:07:49 +01:00
3d13b448e5
gnu: r-copynumber: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-copynumber): Move from here...
* gnu/packages/bioconductor.scm (r-copynumber): ...to here.
2019-03-06 21:07:49 +01:00
6aa896d82e
gnu: Update copyright headers.
...
This is a follow-up to commit 1fe9a36173
2019-03-06 21:07:49 +01:00
d2b38df62e
gnu: font-gnu-unifont: Update to 12.0.01.
...
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 12.0.01.
2019-03-06 20:51:47 +02:00
393b55d5c7
gnu: cabextract: Don't use NAME in source URI.
...
* gnu/packages/compression.scm (cabextract)[source]: Hard-code NAME.
2019-03-06 16:48:40 +01:00
bde093c23d
gnu: cabextract: Update to 1.9.1.
...
* gnu/packages/compression.scm (cabextract): Update to 1.9.1.
2019-03-06 16:48:39 +01:00
8fadbc4bb3
gnu: lcov: Update to 1.14.
...
* gnu/packages/code.scm (lcov): Update to 1.14.
2019-03-06 16:48:39 +01:00
7016e62070
gnu: python-mako: Update home page.
...
* gnu/packages/python-xyz.scm (python-mako)[home-page]: Use HTTPS.
2019-03-06 16:30:48 +01:00
dff79364cf
gnu: fuseiso: Fix typo.
...
* gnu/packages/linux.scm (fuseiso)[synopsis]: s/imsages/images.
2019-03-06 16:30:48 +01:00
a9eeda20b4
gnu: valgrind: Add download mirror.
...
* gnu/packages/valgrind.scm (valgrind)[source](uri): Add mirror.
2019-03-06 16:30:48 +01:00
38502a7d13
gnu: bismark: Update to 0.20.1.
...
* gnu/packages/bioinformatics.scm (bismark): Update to 0.20.1.
[source]: Remove obsolete snippet.
[arguments]: Add build phase "replace-plotly.js" and add requried modules;
adjust "install" phase.
[inputs]: Add perl-carp and perl-getopt-long.
[native-inputs]: Add plotly.js and uglify-js.
2019-03-06 16:26:23 +01:00
1564e0fefa
gnu: Add fuseiso.
...
* gnu/packages/linux.scm (fuseiso): New variable.
2019-03-06 16:24:34 +01:00
cb66fb101f
gnu: Add r-scde.
...
* gnu/packages/bioinformatics.scm (r-scde): New variable.
2019-03-06 15:55:54 +01:00
afeb10a056
gnu: Add bowtie1.
...
* gnu/packages/bioinformatics.scm (bowtie1): New variable.
2019-03-06 15:32:45 +01:00
5b8f892872
gnu: octave, octave-cli: Update to 5.1.0.
...
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.1.0.
2019-03-06 09:17:33 -05:00
e366521a94
gnu: crawl, crawl-tiles: Update to 0.23.1.
...
* gnu/packages/games.scm (crawl, crawl-tiles): Update to 0.23.1.
[native-inputs]: Add python and python-pyyaml.
[arguments]: Add 'patch-python' phase, modify the 'check' phase and move the
'check' phase back after the 'build' phase.
2019-03-06 09:17:24 -05:00
5bb674a0cd
gnu: perl-czplib: Fix installation directory.
...
* gnu/packages/perl.scm (perl-czplib)[arguments]: Fix installation directory.
2019-03-06 15:05:38 +01:00
5531782d1c
gnu: Add guile-studio.
...
* gnu/packages/guile-xyz.scm (guile-studio): New variable.
2019-03-06 14:40:02 +01:00
4fc9b5b1dd
gnu: Add genrich.
...
* gnu/packages/bioinformatics.scm (genrich): New variable.
2019-03-06 13:28:45 +01:00
1fe9a36173
gnu: r-dnacopy: Remove duplicate definition.
...
Reported by Christopher Baines <mail@cbaines.net>.
* gnu/packages/bioinformatics.scm (r-dnacopy): Remove variable.
2019-03-06 10:39:28 +01:00
3dad6087be
gnu: Add r-org-dr-eg-db.
...
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): New variable.
2019-03-06 10:29:25 +01:00
43d6776ba4
gnu: java-eclipse-jdt-core: Update to 3.16.0.
...
* gnu/packages/java.scm (java-eclipse-jdt-core): Update to 3.16.0.
2019-03-06 10:10:23 +01:00
c8427a5e91
gnu: java-eclipse-core-resources: Update to 3.13.200.
...
* gnu/packages/java.scm (java-eclipse-core-resources): Update to 3.13.200.
2019-03-06 10:10:23 +01:00
4fa9b6e657
gnu: java-eclipse-core-runtime: Update to 3.15.100.
...
* gnu/packages/java.scm (java-eclipse-core-runtime): Update to 3.15.100.
2019-03-06 10:10:23 +01:00
e40e3792e6
gnu: java-eclipse-equinox-common: Update to 3.10.200.
...
* gnu/packages/java.scm (java-eclipse-equinox-common): Update to 3.10.200.
2019-03-06 10:10:19 +01:00
d9eada7917
gnu: shaderc: Update to 2018.0.
...
* gnu/packages/vulkan.scm (shaderc): Update to 2018.0.
2019-03-06 09:26:50 +01:00
264c803b82
gnu: spirv-tools: Update to 2019.1.
...
* gnu/packages/vulkan.scm (spirv-tools): Update to 2019.1.
[arguments]: Add 'fixgcc7 phase.
[native-inputs]: Add gcc-7.
2019-03-06 09:26:50 +01:00
9a1de5f0fa
gnu: spirv-headers: Update to commit 8bea0a2.
...
* gnu/packages/vulkan.scm (spirv-headers): Update to commit 8bea0a2.
2019-03-06 09:26:49 +01:00
3113ecfaec
gnu: glslang: Update to 7.11.3113.
...
* gnu/packages/vulkan.scm (glslang): Update to 7.11.3113.
2019-03-06 09:26:49 +01:00
3546e97f38
gnu: MPD: Update to 0.21.5.
...
* gnu/packages/mpd.scm (mpd): Update to 0.21.5.
2019-03-05 21:10:54 -05:00
84eb265eb8
gnu: FFmpeg: Build with AV1 support.
...
* gnu/packages/video.scm (ffmpeg)[inputs]: Add libaom.
[arguments]: Pass '--enable-libaom' to #:configure-flags.
(ffmpeg-3.4)[inputs, arguments]: Filter out libaom.
2019-03-05 18:29:20 -05:00
a7afa45401
gnu: Add libaom.
...
* gnu/packages/video.scm (libaom): New variable.
Co-authored-by: Leo Famulari <leo@famulari.name>
2019-03-05 18:29:20 -05:00
dbfa3bb5d0
gnu: you-get: Update to 0.4.1256.
...
* gnu/packages/video.scm (you-get): Update to 0.4.1256.
2019-03-06 00:15:28 +01:00
fe67e51301
gnu: youtube-dl: Update to 2019.03.01.
...
* gnu/packages/video.scm (youtube-dl): Update to 2019.03.01.
2019-03-06 00:15:27 +01:00
84bdd0ec06
gnu: plantuml: Update to 1.2019.2.
...
* gnu/packages/uml.scm (plantuml): Update to 1.2019.2.
2019-03-06 00:15:27 +01:00
2830802043
gnu: xinit: Update to 1.4.1.
...
* gnu/packages/xorg.scm (xinit): Update to 1.4.1.
2019-03-06 00:15:27 +01:00
2e625ef73a
gnu: lxc: Fix documentation directory.
...
* gnu/packages/virtualization.scm (lxc)[arguments]: Set ‘--docdir’ in #:configure-flags.
2019-03-06 00:15:26 +01:00
cc7058b20b
gnu: lxc: Update to 3.1.0.
...
* gnu/packages/virtualization.scm (lxc): Update to 3.1.0.
2019-03-06 00:15:26 +01:00
5f7c036cf6
gnu: dav1d: Update to 0.2.0.
...
* gnu/packages/video.scm (dav1d): Update to 0.2.0.
[source]: Add alternate URL.
2019-03-05 17:56:49 -05:00
5387971a9e
artwork: Update snapshot to b975164.
...
* gnu/artwork.scm (%artwork-repository): Update to b975164.
2019-03-05 23:08:53 +01:00
af85757915
gnu: singularity: Leave PATH unchanged.
...
Previously 'singularity help' & co. would all fail on Guix System
because Coreutils, grep, etc. were not found in $PATH.
* gnu/packages/linux.scm (singularity)[source](snippet): Remove "PATH"
setting from 'bin/singularity.in'.
2019-03-05 23:08:53 +01:00
fbf26cbcf3
gnu: singularity: Patch 'Makefile.in' in a snippet.
...
* gnu/packages/linux.scm (singularity)[source](snippet, modules): New
fields.
[arguments]: Remove 'disable-install-hook' phase.
2019-03-05 23:08:53 +01:00
107b081ef7
gnu: wpa-supplicant: Add 'cpe-name' property.
...
* gnu/packages/admin.scm (wpa-supplicant-minimal)[properties]: New
field.
2019-03-05 23:08:53 +01:00
f4319c6e28
gnu: Syncthing: Update to 1.1.0.
...
* gnu/packages/syncthing.scm (syncthing): Update to 1.1.0.
2019-03-05 14:42:49 -05:00
f862697b5c
gnu: emacs-no-x-toolkit: Fix configure flags.
...
* gnu/packages/emacs.scm (emacs-no-x-toolkit)[arguments]: Don't lose
custom configure flags.
2019-03-05 21:38:51 +02:00
7e80767dc3
gnu: emacs-disk-usage: Update to 1.3.0.
...
* gnu/packages/emacs-xyz.scm (emacs-disk-usage): Update to 1.3.0.
2019-03-05 20:03:20 +01:00
908a3f3614
gnu: thinkfan: Let the build system handle rcscripts/.
...
This moves them from /share/thinkfan to their conventional locations
in /etc and /lib; the former was an arbitrary Guixism anyway.
* gnu/packages/linux.scm (thinkfan)[arguments]:
Re-write 'install-rc-scripts' as 'create-init-scripts' and move it after
the 'unpack' phase.
2019-03-05 17:01:53 +01:00
9a3d176ee1
gnu: thinkfan: Update to 1.0.2.
...
* gnu/packages/linux.scm (thinkfan): Update to 1.0.2.
[arguments]: Adjust source directory.
2019-03-05 17:01:53 +01:00
9eb7cde0e8
gnu: iucode-tool: Update to 2.3.1.
...
* gnu/packages/linux.scm (iucode-tool): Update to 2.3.1.
2019-03-05 17:01:53 +01:00
59ac0a2a59
gnu: f2fs-tools: Update to 1.12.0.
...
* gnu/packages/linux.scm (f2fs-tools): Update to 1.12.0.
2019-03-05 17:01:53 +01:00
2d588f3c03
gnu: f2fs-tools: Don't use NAME in source URI.
...
* gnu/packages/linux.scm (f2fs-tools-1.7, f2fs-tools)[source]:
Hard-code NAME.
2019-03-05 17:01:52 +01:00
9e6008b775
gnu: xfsprogs: Update to 4.20.0.
...
* gnu/packages/linux.scm (xfsprogs): Update to 4.20.0.
2019-03-05 17:01:52 +01:00
e569c7723d
gnu: libnftnl: Update to 1.1.2.
...
* gnu/packages/linux.scm (libnftnl): Update to 1.1.2.
2019-03-05 17:01:52 +01:00
083639a553
gnu: genext2fs: Update to 1.4.1-4.
...
* gnu/packages/linux.scm (genext2fs): Update to 1.4.1-4.
[arguments]: Add 'apply-debian-patches' phase.
[native-inputs]: Add autoconf and automake.
2019-03-05 17:01:51 +01:00
f5e08f1793
gnu: wget2: Update to 1.99.1.
...
This fixes https://issues.guix.info/issue/34718 .
* gnu/packages/wget.scm (wget2): Update to 1.99.1.
[arguments]: Add phase to skip network tests. Update custom 'bootstrap
phase to not require unnecessary binaries.
[inputs]: Remove doxygen, python. Move autoconf, automake, flex,
gettext-minimal, libtool ...
[native-inputs]: ... to here. Add python-2.
2019-03-05 17:46:46 +02:00
f347fb79df
linux-modules: module-soft-dependencies: Partition the result and return it as two lists.
...
* gnu/build/linux-modules.scm (module-soft-dependencies): Partition the
result and return it as two lists.
2019-03-05 13:43:34 +01:00
1a3db0b22f
gnu: rust: Update to 1.31.1.
...
* gnu/patches/rust-1.30-gdb-llvm.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.29): ...this.
(rust-1.30): New variable.
(rust): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-05 13:43:09 +01:00
ac5aad535c
gnu: scdoc: Update to 1.9.4.
...
* gnu/packages/man.scm (scdoc): Update to 1.9.4.
2019-03-05 11:49:06 +01:00
df747c8d68
gnu: Add mailcatcher.
...
* gnu/packages/ruby.scm (mailcatcher): New variable.
2019-03-05 11:25:21 +01:00
be6016db4b
gnu: Add ruby-skinny.
...
* gnu/packages/ruby.scm (ruby-skinny): New variable.
2019-03-05 11:22:34 +01:00
6e87695ba4
gnu: Add ruby-thin.
...
* gnu/packages/ruby.scm (ruby-thin): New variable.
2019-03-05 11:22:34 +01:00
3bb094e282
gnu: Add ruby-sinatra.
...
* gnu/packages/ruby.scm (ruby-sinatra): New variable.
2019-03-05 11:22:34 +01:00
acb9e3d8cc
gnu: Add ruby-mustermann.
...
* gnu/packages/ruby.scm (ruby-mustermann): New variable.
2019-03-05 11:22:28 +01:00
3355e49cf8
gnu: ruby-rack-protection: Update to 2.0.5.
...
* gnu/packages/ruby.scm (ruby-rack-protection): Update to 2.0.5.
2019-03-05 10:06:05 +01:00
9c7226dfd5
gnu: python-language-server: Update to 0.24.0.
...
* gnu/packages/python-xyz.scm (python-language-server): Update to 0.24.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-04 22:37:02 -05:00
d22d246a25
gnu: btrfs-progs: Update to 4.20.2.
...
* gnu/packages/linux.scm (btrfs-progs): Update to 4.20.2.
2019-03-05 00:05:14 +01:00
d23495fa69
gnu: folks: Update to 0.11.4.
...
* gnu/packages/gnome.scm (folks): Update to 0.11.4.
2019-03-05 00:05:14 +01:00
e5f4796e62
gnu: folks: Don't use NAME in source URI.
...
* gnu/packages/gnome.scm (folks)[source]: Hard-code NAME.
2019-03-05 00:05:13 +01:00
8d6813f98e
gnu: virtualgl: Update to 2.6.1.
...
* gnu/packages/gl.scm (virtualgl): Update to 2.6.1.
2019-03-05 00:05:13 +01:00
77593a444f
gnu: gegl: Update to 0.4.14.
...
* gnu/packages/gimp.scm (gegl): Update to 0.4.14.
2019-03-05 00:05:13 +01:00
bba5bb30dd
gnu: font-anonymous-pro: Use HTTPS home page.
...
* gnu/packages/fonts.scm (font-anonymous-pro)[source, home-page]: Use HTTPS.
2019-03-05 00:05:13 +01:00
76498783ea
gnu: font-fira-code: Update to 1.206.
...
* gnu/packages/fonts.scm (font-fira-code): Update to 1.206.
2019-03-05 00:05:12 +01:00
73c5c4820a
gnu: font-terminus: Update to 4.47.
...
* gnu/packages/fonts.scm (font-terminus): Update to 4.47. Re-indent.
[native-inputs]: Replace perl with python. Order alphabetically.
[arguments]: Remove #:configure-flags.
2019-03-05 00:05:12 +01:00
2d8e1e286d
gnu: font-wqy-zenhei: Remove redundant FILE-NAME.
...
* gnu/packages/fonts.scm (font-wqy-zenhei)[source]: Remove FILE-NAME field.
2019-03-05 00:05:12 +01:00
78cda0bca5
gnu: font-wqy-zenhei: Use HTTPS home page.
...
* gnu/packages/fonts.scm (font-wqy-zenhei)[home-page]: Use HTTPS.
2019-03-05 00:05:11 +01:00
f0736d4795
gnu: go-github.com-jtolds-gls: Update to 4.20.
...
* gnu/packages/golang.scm (go-github.com-jtolds-gls): Update to 4.20.
2019-03-04 17:04:42 -05:00
e31f3cd57c
gnu: Add perl-data-dumper.
...
* gnu/packages/perl.scm (perl-data-dumper): New variable.
2019-03-04 23:02:12 +01:00
84b226c27e
gnu: java-eclipse-jdt-core: Include resources.
...
* gnu/packages/java.scm (java-eclipse-jdt-core)[arguments]: Add build phases
"copy-resources" and "move-sources".
2019-03-04 23:02:12 +01:00
5ae458befc
gnu: rocksdb: Update to 5.18.3.
...
* gnu/packages/databases.scm (rocksdb): Update to 5.18.3.
2019-03-04 22:20:08 +01:00
6a7ef08aa9
gnu: liblo: Update to 0.30.
...
* gnu/packages/audio.scm (liblo): Update to 0.30.
2019-03-04 22:20:08 +01:00
248f651e77
gnu: xorg-server: Update to 1.20.4.
...
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.4.
(xorg-server-for-tests): Stay on version 1.20.3.
2019-03-04 22:20:07 +01:00
cb505b27eb
gnu: xorg-server: Don't use NAME in source URI.
...
* gnu/packages/xorg.scm (xorg-server)[source](uri): Hard-code NAME.
2019-03-04 22:20:07 +01:00
b95d758b33
gnu: pootle: Update to 2.8.2.
...
* gnu/packages/django.scm (pootle): Update to 2.8.2.
2019-03-04 21:52:45 +01:00
add6635281
gnu: python-django-allauth: Update to 0.39.1.
...
* gnu/packages/django.scm (python-django-allauth): Update to 0.39.1.
2019-03-04 21:52:43 +01:00
9597c55005
gnu: python2-openid: Fix package.
...
* gnu/packages/python-web (python2-openid)[arguments]: Disable tests.
2019-03-04 21:52:41 +01:00
1396837184
gnu: python-django-rq: Update to 1.3.0.
...
* gnu/packages/django.scm (python-django-rq): Update to 1.3.0.
2019-03-04 21:52:38 +01:00
f55fe42b36
gnu: python-django-redis: Update to 4.10.0.
...
* gnu/packages/django.scm (python-django-redis): Update to 4.10.0.
2019-03-04 21:52:36 +01:00
865c76ea3b
gnu: python-rq: Update to 0.13.0.
...
* gnu/packages/databases.scm (python-rq): Update to 0.13.0.
2019-03-04 21:52:33 +01:00
dcbe674c86
gnu: python-redis: Update to 3.2.0.
...
* gnu/packages/databases.scm (python-redis): Update to 3.2.0.
2019-03-04 21:52:17 +01:00
bcbb3cc907
gnu: Add ruby-tilt.
...
* gnu/packages/ruby.scm (ruby-tilt): New variable.
2019-03-04 20:33:22 +00:00
8ea991e3af
gnu: Add ruby-haml.
...
* gnu/packages/ruby.scm (ruby-haml): New variable.
2019-03-04 20:33:22 +00:00
09e2b0af40
gnu: Add ruby-temple.
...
* gnu/packages/ruby.scm (ruby-temple): New variable.
2019-03-04 20:33:22 +00:00
76b732fbc3
gnu: Add ruby-markaby.
...
* gnu/packages/ruby.scm (ruby-markaby): New variable.
2019-03-04 20:33:21 +00:00
9efc888d97
gnu: Add ruby-sassc.
...
* gnu/packages/ruby.scm (ruby-sassc): New variable.
2019-03-04 20:33:21 +00:00
8c15015779
gnu: sassc: Update and improve the package.
...
Now that libsass is packaged, change the sassc package to build a dynamically
linked binary. Also update the version, and change the source to the Git
repository, rather than the archives from GitHub.
* gnu/packages/web.scm (sassc): Update to 3.5.0.
[source]: Change to the Git repository.
[arguments]: Tweak to link against libsass.
2019-03-04 20:33:21 +00:00
7fe1be1879
gnu: Add libsass.
...
* gnu/packages/web.scm (libsass): New variable.
2019-03-04 20:33:21 +00:00
450a3f7f2b
gnu: Add ruby-minitest-around.
...
* gnu/packages/ruby.scm (ruby-minitest-around): New variable.
2019-03-04 20:33:21 +00:00
93dc8684cf
gnu: Add ruby-test-construct.
...
* gnu/packages/ruby.scm (ruby-test-construct): New variable.
2019-03-04 20:33:21 +00:00
d6084cdb12
gnu: Add ruby-omniauth-oauth2.
...
* gnu/packages/ruby.scm (ruby-omniauth-oauth2): New variable.
2019-03-04 20:33:21 +00:00
ad6471d415
gnu: Add ruby-with-advisory-lock.
...
* gnu/packages/rails.scm (ruby-with-advisory-lock): New variable.
2019-03-04 20:33:20 +00:00
e42eecdb78
gnu: Add ruby-warden-oauth2.
...
* gnu/packages/ruby.scm (ruby-warden-oauth2): New variable.
2019-03-04 20:33:20 +00:00
e32c99d23e
gnu: Add ruby-warden.
...
* gnu/packages/ruby.scm (ruby-warden): New variable.
2019-03-04 20:33:20 +00:00
29dc48231d
gnu: Add ruby-omniauth.
...
* gnu/packags/ruby.scm (ruby-omniauth): New variable.
2019-03-04 20:33:20 +00:00
92b3750059
gnu: Add ruby-oauth2.
...
* gnu/packages/ruby.scm (ruby-oauth2): New variable.
2019-03-04 20:33:20 +00:00
ca914b5bb1
gnu: Add ruby-multi-xml.
...
* gnu/packages/ruby.scm (ruby-multi-xml): New variable.
2019-03-04 20:33:20 +00:00
2a8581ac38
gnu: Add ruby-jwt.
...
* gnu/packages/ruby.scm (ruby-jwt): New variable.
2019-03-04 20:33:20 +00:00
2a9ce5cb3e
gnu: Add ruby-rbnacl.
...
* gnu/packages/ruby.scm (ruby-rbnacl): New variable.
2019-03-04 20:33:20 +00:00
dbbe88d383
gnu: Add ruby-que.
...
* gnu/packages/ruby.scm (ruby-que): New variable.
2019-03-04 20:33:19 +00:00
a714c30f96
gnu: Add ruby-terraform.
...
* gnu/packages/ruby.scm (ruby-terraform): New variable.
2019-03-04 20:33:19 +00:00
b32225187b
gnu: Add ruby-lino.
...
* gnu/packages/ruby.scm (ruby-lino): New variable.
2019-03-04 20:33:19 +00:00
353b7eb8c5
gnu: Add ruby-hamster.
...
* gnu/packages/ruby.scm (ruby-hamster): New variable.
2019-03-04 20:33:19 +00:00
433e315430
gnu: Add ruby-open4.
...
Also add a copyright line, as I've obviously neglected to do that in the past.
* gnu/packages/ruby.scm (ruby-open4): New variable.
2019-03-04 20:33:17 +00:00
Ricardo Wurmus