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18066 Commits (730ed6ec8b69a0f908a8aadbbe0555dd45de227c)

Author SHA1 Message Date
Ben Woodcroft 0620387a59
gnu: bcftools: Update to 1.5. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag.  Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft 63fa0ffcd4
gnu: samtools: Update to 1.5. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
 2017-07-23 10:29:36 +10:00
Ben Woodcroft 4fb6d1280e
gnu: htslib: Update to 1.5. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft 60739965da
gnu: python-pysam: Update to 0.11.2.2. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft bca2c57658
gnu: bamm: Use htslib-1.3. 
* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft 98593f9f51
gnu: bcftools: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch.  Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-07-23 10:29:35 +10:00
Ben Woodcroft 4ab1644049
gnu: samtools: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
 2017-07-23 10:29:34 +10:00
Ben Woodcroft a9e4a1e641
gnu: htslib: Update to 1.4.1. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
 2017-07-23 10:29:34 +10:00
Ben Woodcroft c842d42593
gnu: samtools: Use "modify-phases" syntax. 
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.
 2017-07-23 10:29:34 +10:00
ng0 c62d1a6e6c
gnu: bspwm: Update to 0.9.3. 
* gnu/packages/wm.scm (bspwm): Update to 0.9.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:17:46 -04:00
ng0 7e3c977da6
gnu: Add oksh. 
* gnu/packages/shells.scm (oksh): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:15:21 -04:00
Ryan Moe 36378bd57e
gnu: quassel: Enable TLS. 
* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-22 20:04:53 -04:00
Tobias Geerinckx-Rice e745221408
gnu: youtube-dl: Update to 2017.07.23. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23.
 2017-07-23 01:59:32 +02:00
Tobias Geerinckx-Rice 4b8b245b83
gnu: mosh: Update to 1.3.2. 
* gnu/packages/ssh.scm (mosh): Update to 1.3.2.
 2017-07-23 01:27:29 +02:00
Ricardo Wurmus a68a83f015
gnu: Add openmolar. 
* gnu/packages/medical.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Quiliro <quiliro@fsfla.org>
 2017-07-22 23:48:58 +02:00
Ricardo Wurmus 2456153adc
gnu: Add python-pyqt+qscintilla. 
* gnu/packages/qt.scm (python-pyqt+qscintilla): New variable.
 2017-07-22 23:48:58 +02:00
Ricardo Wurmus 06d04dbcfc
gnu: Add python-qscintilla. 
* gnu/packages/qt.scm (python-qscintilla): New variable.

Co-authored-by: Quiliro <quiliro@fsfla.org>
 2017-07-22 23:48:57 +02:00
Ricardo Wurmus 3befd0a97c
gnu: Add qscintilla. 
* gnu/packages/qt.scm (qscintilla): New variable.

Co-authored-by: Quiliro <quiliro@fsfla.org>
 2017-07-22 23:48:57 +02:00
Ricardo Wurmus 056468dc5f
gnu: Add cran module. 
* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
 2017-07-22 23:48:57 +02:00
Mark H Weaver 30f8349efb
gnu: linux-libre: Update to 4.12.3. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.3.
(%linux-libre-hash): Update hash.
 2017-07-22 14:46:00 -04:00
Mark H Weaver d422eac54e
gnu: linux-libre@4.9: Update to 4.9.39. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.39.
 2017-07-22 14:45:06 -04:00
Mark H Weaver f97c67a275
gnu: linux-libre@4.4: Update to 4.4.78. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.78.
 2017-07-22 14:44:24 -04:00
Ricardo Wurmus 3a4b0b126b
gnu: r-s4vectors: Update to 0.14.3. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.3.
 2017-07-22 17:31:19 +02:00
Ricardo Wurmus a35a1e9c13
gnu: r-genomicranges: Update to 1.28.4. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.4.
 2017-07-22 17:22:07 +02:00
Marius Bakke aa51da7eef
gnu: Remove python-fake-factory leftovers. 
This is a followup to c799eb2eb8.

* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-22 15:07:45 +02:00
Marius Bakke c799eb2eb8
gnu: Remove python-fake-factory. 
Superseded by python-faker since ce7911ddae.

* gnu/packages/python.scm (python-fake-factory, python2-fake-factory):
Remove variables.
 2017-07-22 14:31:28 +02:00
Marius Bakke 2580c2f07f
gnu: python-pyopenssl: Update to 17.2.0. 
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.2.0.
[native-inputs]: Add PYTHON-FLAKY.
[source](patches): Remove.
 2017-07-22 14:31:28 +02:00
Marius Bakke 4e52739c61
gnu: Add python-flaky. 
* gnu/packages/python.scm (python-flaky, python2-flaky): New variables.
 2017-07-22 14:31:27 +02:00
Marius Bakke 6027cb8a82
gnu: maim: Update to 5.4.64. 
* gnu/packages/xdisorg.scm (maim): Update to 5.4.64.
 2017-07-22 14:31:27 +02:00
Marius Bakke eb2b5f9d03
gnu: slop: Update to 6.3.47. 
* gnu/packages/xdisorg.scm (slop): Update to 6.3.47.
[inputs]: Add GLEW.
 2017-07-22 14:31:27 +02:00
Tobias Geerinckx-Rice 0cd95cefe0
gnu: parallel: Update to 20170722. 
* gnu/packages/parallel.scm (parallel): Update to 20170722.
 2017-07-22 13:47:26 +02:00
Tobias Geerinckx-Rice bc35c9d318
gnu: font-gnu-unifont: Update to 10.0.05. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.05.
 2017-07-22 13:47:26 +02:00
Tobias Geerinckx-Rice f7975a3bde
gnu: nano: Update to 2.8.6. 
* gnu/packages/nano.scm (nano): Update to 2.8.6.
 2017-07-22 13:47:25 +02:00
Tobias Geerinckx-Rice f03d8d67a5
gnu: acct: Update to 6.6.4. 
* gnu/packages/acct.scm (acct): Update to 6.6.4.
 2017-07-22 13:47:25 +02:00
Muriithi Frederick Muriuki 84fcb58050
gnu: Add conda. 
* gnu/packages/package-management.scm (conda): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-07-22 12:26:30 +02:00
Muriithi Frederick Muriuki 4bc08b6e79
gnu: Add python-conda. 
* gnu/packages/package-management.scm (python-conda, python2-conda): New
variables.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-07-22 12:26:29 +02:00
Muriithi Frederick Muriuki 513d35f191
gnu: Add python-anaconda-client. 
* gnu/packages/package-management.scm (python-anaconda-client,
python2-anaconda-client): New variables.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-07-22 12:26:29 +02:00
Muriithi Frederick Muriuki 1f84ff5135
gnu: Add python-clyent. 
* gnu/packages/python.scm (python-clyent, python2-clyent): New variables.
 2017-07-22 12:26:29 +02:00
Muriithi Frederick Muriuki 3fee003950
gnu: Update python-pytz to 2017.2. 
* gnu/packages/python.scm (python-pytz, python2-pytz): Update to 2017.2.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-07-22 12:26:29 +02:00
Tobias Geerinckx-Rice de469015c4
gnu: man-pages: Update to 4.12. 
* gnu/packages/man.scm (man-pages): Update to 4.12.
 2017-07-22 12:18:58 +02:00
Eric Bavier 1ffe41711b
gnu: tint2: Update to 0.14.6. 
* gnu/packages/xdisorg.scm (tint2): Update to 0.14.6.
 2017-07-21 22:41:24 -05:00
Leo Famulari e9185cbac6
gnu: icedtea@3: Update to 3.5.0 [security fixes]. 
Fixes CVE-2017-{10053,10067,10074,10074,10078,10081,10087,10089,10090,10096,
10101,10102,10107,10108,10109,10110,10111,10115,10116,10118,10135,10176,10193,
10198}.

* gnu/packages/java.scm (icedtea-8): Update to 3.5.0.
 2017-07-21 17:30:08 -04:00
Mathieu Othacehe c800fd564b
services: cuirass: Add fallback parameter. 
* gnu/services/cuirass.scm (<cuirass-configuration>)[fallback?]: New field.
(cuirass-shepherd-service): Take it into account.
* doc/guix.texi (Continuous Integration): Document it.
 2017-07-21 21:46:47 +02:00
Leo Famulari 3c14378381
gnu: vim: Update to 8.0.0727 [fixes CVE-2017-11109]. 
* gnu/packages/vim.scm (vim): Update to 8.0.0727.
(vim-full)[source]: Add field and hold back at version 8.0.0600.
 2017-07-21 15:20:23 -04:00
Leo Famulari 6f226c078c
gnu: mysql: Update to 5.7.19. 
* gnu/packages/databases.scm (mysql): Update to 5.7.19.
 2017-07-21 14:50:24 -04:00
Tobias Geerinckx-Rice 0cf9f9b1e3
gnu: libpsl: Update to 0.18.0. 
* gnu/packages/web.scm (libpsl): Update to 0.18.0.
[native-inputs]: Add pkg-config.
[inputs]: Replace icu4c with libidn2; add libunistring.
 2017-07-21 12:24:47 +02:00
Leo Famulari cd4f35c379
gnu: borg: Update to 1.0.11. 
* gnu/packages/backup.scm (borg): Update to 1.0.11.
 2017-07-21 01:23:25 -04:00
Leo Famulari f8fabfc99f
gnu: bitcoin-core: Actually build the graphical client. 
* gnu/packages/finance.scm (bitcoin-core)[inputs]: Replace qtbase with qt.
 2017-07-20 18:42:28 -04:00
Alex Vong 81c35029d4
gnu: heimdal: Fix CVE-2017-{6594,11103}. 
* gnu/packages/patches/heimdal-CVE-2017-6594.patch,
gnu/packages/patches/heimdal-CVE-2017-11103.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/kerberos.scm (heimdal)[source]: Use them.
 2017-07-20 15:33:53 -04:00
Arun Isaac cfd6a3b1ee
gnu: Add bmon. 
* gnu/packages/networking.scm (bmon): New variable.
 2017-07-20 23:19:24 +05:30
Ricardo Wurmus fb5dfa86b1
gnu: texlive-latex-mdwtools: Fix syntax error in description. 
* gnu/packages/tex.scm (texlive-latex-mdwtools)[description]: Fix texinfo
syntax error.
 2017-07-20 16:40:29 +02:00
Ricardo Wurmus 09acbb02c7
gnu: texlive-latex-environ: Fix invalid texinfo markup. 
* gnu/packages/tex.scm (texlive-latex-environ)[description]: Fix texinfo
syntax errors.
 2017-07-20 16:36:31 +02:00
Arun Isaac 0daa1d646a
gnu: Add mksh. 
* gnu/packages/shells.scm (mksh): New variable.
 2017-07-20 19:55:22 +05:30
Leo Famulari 8582e03ae5
gnu: Remove a left-over patch. 
This is a followup to commit 426b0b898f.

* gnu/packages/patches/pcre-CVE-2017-7186.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-20 09:00:36 -04:00
Leo Famulari 426b0b898f
gnu: pcre: Update replacement to 8.41 [fixes CVE-2017-{7244,7245,7246}]. 
* gnu/packages/pcre.scm (pcre)[replacement]: Update to pcre-8.41.
(pcre/fixed): Replace with ...
(pcre-8.41): ... new variable.
 2017-07-20 08:26:40 -04:00
Ludovic Courtès 8b113790fa
tests: Use 'virtual-machine' records instead of monadic procedures. 
* gnu/tests/base.scm (%test-basic-os): Use 'let*' instead of 'mlet*' and
'virtual-machine' instead of 'system-qemu-image/shared-store-script'.
(run-mcron-test): Likewise.
(run-nss-mdns-test): Likewise.
* gnu/tests/dict.scm (run-dicod-test): Likewise.
* gnu/tests/mail.scm (run-opensmtpd-test): Likewise.
(run-exim-test): Likewise.
* gnu/tests/messaging.scm (run-xmpp-test): Likewise.
* gnu/tests/networking.scm (run-inetd-test): Likewise.
* gnu/tests/nfs.scm (run-nfs-test): Likewise.
* gnu/tests/ssh.scm (run-ssh-test): Likewise.
* gnu/tests/web.scm (run-nginx-test): Likewise.
 2017-07-20 11:57:13 +02:00
Ludovic Courtès ed419fa0c5
vm: Add a <virtual-machine> type and associated gexp compiler. 
* gnu/system/vm.scm (system-qemu-image/shared-store-script): Add
 #:options parameter and honor it.
(<virtual-machine>): New record type.
(virtual-machine): New macro.
(port-forwardings->qemu-options, virtual-machine-compiler): New
procedures.
 2017-07-20 11:57:13 +02:00
Oleg Pykhalov c97cef0a91
gnu: Add premake4. 
* gnu/packages/build-tools.scm (premake4): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-20 11:57:13 +02:00
Gábor Boskovits 742242a5be
gnu: Add java-commons-cli@1.2. 
* gnu/packages/java.scm(java-commons-cli-1.2): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-20 11:57:12 +02:00
Theodoros Foradis 6158309450
gnu: Update g-wrap to use guile-2.2. 
* gnu/packages/guile.scm (g-wrap): [propagated-inputs]: Use guile-2.2.
[arguments]: Add "--disable-Werror" to configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-20 11:57:12 +02:00
Ricardo Wurmus ab466d79e1
gnu: Add eolie. 
* gnu/packages/gnome.scm (eolie): New variable.
 2017-07-20 08:41:28 +02:00
Tobias Geerinckx-Rice 0762a1dbf4
gnu: perl-html-template: Update to 2.97. 
* gnu/packages/web.scm (perl-html-template): Update to 2.97.
 2017-07-20 02:10:55 +02:00
Tobias Geerinckx-Rice 1a34ca0e8f
gnu: openh264: Update to 1.7.0. 
* gnu/packages/video.scm (openh264): Update to 1.7.0.
 2017-07-20 01:36:51 +02:00
Tobias Geerinckx-Rice ba4e15ae85
gnu: gnome-mpv: Update to 0.12. 
* gnu/packages/video.scm (gnome-mpv): Update to 0.12.
 2017-07-20 01:36:50 +02:00
Jonathan Brielmaier 29ac89a635
gnu: Add 0xffff. 
* gnu/packages/flashing-tools.scm (0xffff): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-20 00:54:52 +02:00
Jonathan Brielmaier 05c8851695
gnu: Add libusb@0.1. 
* gnu/packages/libusb.scm (libusb-0.1): New variable.
* gnu/packages/patches/libusb-0.1-disable-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-20 00:54:52 +02:00
Maxim Cournoyer 7c0d4c3a6b
gnu: lapack: Fix hash of release 3.7.1 
Apparently the release was modified (cleaned-up) in-place. An issue was opened
at https://github.com/Reference-LAPACK/lapack-release/issues/4.

* gnu/packages/maths.scm (lapack): Fix sha256 hash.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-20 00:54:51 +02:00
Ben Woodcroft ca8fb248de
gnu: Add patches missing from dist_patch_DATA. 
Reported by Eric Bavier.

* gnu/local.mk (dist_patch_DATA): Add
gnu/packages/patches/hmmer-remove-cpu-specificity.patch,
gnu/packages/patches/jacal-fix-texinfo.patch,
gnu/packages/patches/python-pbr-fix-man-page-support.patch and
gnu/packages/patches/vsearch-unbundle-cityhash.patch.
 2017-07-20 08:51:56 +10:00
Tobias Geerinckx-Rice dc05f6523e
gnu: qsyncthingtray: Update to 0.5.8. 
* gnu/packages/sync.scm (qsyncthingtray): Update to 0.5.8.
 2017-07-20 00:35:02 +02:00
Tobias Geerinckx-Rice 53cea7594c
gnu: dub: Update to 1.4.0. 
* gnu/packages/ldc.scm (dub): Update to 1.4.0.
 2017-07-20 00:34:57 +02:00
Ricardo Wurmus e7304ab18b
gnu: Add python-sphinx-1.6. 
* gnu/packages/python.scm (python-sphinx-1.6): New variable.
 2017-07-19 22:27:03 +02:00
Ricardo Wurmus 5f94ec913f
gnu: Add python-sphinxcontrib-websupport. 
* gnu/packages/python.scm (python-sphinxcontrib-websupport): New variable.
 2017-07-19 22:27:02 +02:00
Ricardo Wurmus 423d2136f0
gnu: Add python-xapian-bindings. 
* gnu/packages/search.scm (python-xapian-bindings): New variable.
 2017-07-19 22:27:02 +02:00
Leo Famulari 6d5deda16d
gnu: graphicsmagick: Update to 1.3.26. 
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.26.
[source]: Use url-fetch and add SourceForge URL. Remove snippet.
 2017-07-19 13:56:43 -04:00
Leo Famulari 8016393eab
gnu: mpv: Update to 0.26.0. 
* gnu/packages/video.scm (mpv): Update to 0.26.0.
 2017-07-19 10:33:31 -04:00
Ricardo Wurmus fd40857938
gnu: r-bsgenome-hsapiens-ucsc-hg19: Update hash. 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Update hash because the tarball changed in place.
 2017-07-19 14:39:37 +02:00
Ricardo Wurmus 1fb9b6782b
gnu: snakemake: Update to 3.13.3. 
* gnu/packages/python.scm (snakemake): Update to 3.13.3.
 2017-07-19 14:39:37 +02:00
Ricardo Wurmus 688fbf572e
gnu: guitarix: Update to 0.35.5. 
* gnu/packages/audio.scm (guitarix): Update to 0.35.5.
 2017-07-19 14:39:37 +02:00
Efraim Flashner 2324541bd0
gnu: sortmerna: Limit support to x86_64 and i686 only. 
* gnu/packages/bioinformatics.scm (sortmerna)[supported-systems]: New field.
 2017-07-19 14:37:47 +03:00
Ludovic Courtès a388c951dd
gnu: totem: Do not build static libraries. 
* gnu/packages/gnome.scm (totem)[arguments]: Pass "--disable-static".
This reduces the size of Totem from 11 MiB to 9 MiB.
 2017-07-19 11:33:02 +02:00
Tobias Geerinckx-Rice 644e5f17df
download: Add OpenBSD mirrors. 
* guix/download.scm (%mirrors) <openbsd>: Add HTTPS OpenBSD mirrors.
* gnu/packages/ntp.scm (openntpd)[source]: Use them.
* gnu/packages/ssh.scm (openssh)[source]: Likewise.
* gnu/packages/tls.scm (libressl)[source]: Likewise.
 2017-07-19 01:42:08 +02:00
Tobias Geerinckx-Rice b225b1bec2
gnu: openntpd: Update to 6.1p1. 
* gnu/packages/ntp.scm (openntpd): Update to 6.1p1.
 2017-07-19 01:06:55 +02:00
Tobias Geerinckx-Rice c48fa0ad32
gnu: tlp: Update to 1.0. 
* gnu/packages/linux.scm (tlp): Update to 1.0.
 2017-07-19 01:06:54 +02:00
Tobias Geerinckx-Rice 137a330988
gnu: meson: Update to 0.41.1. 
* gnu/packages/build-tools.scm (meson) Update to 0.41.1.
 2017-07-19 01:06:54 +02:00
Ludovic Courtès ec5c24f9a8
gnu: totem: Disable automatic plugin installation. 
* gnu/packages/gnome.scm (totem)[arguments]: Add #:configure-flags.
 2017-07-18 22:46:47 +02:00
Ludovic Courtès 8d033e3e16
vm: 'iso9660-image' produces a single-file output. 
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Add
  #:single-file-output? and pass it to 'load-in-linux-vm'.
(iso9660-image): Pass #:single-file-output? to
'expression->derivation-in-linux-vm'.
* gnu/build/vm.scm (load-in-linux-vm): Add #:single-file-output? and
honor it.
 2017-07-18 21:41:35 +02:00
Jelle Licht 45c18f8529
gnu: node: Add search path specification for 'NODE_PATH'. 
* gnu/packages/node.scm (node)[native-search-paths]: New field.
 2017-07-18 17:49:02 +02:00
Tobias Geerinckx-Rice 21ffcd65c5
vm: Increase disk size overhead estimate. 
* gnu/build/vm.scm (estimated-partition-size): Add 25% to the graph size.
 2017-07-18 17:14:38 +02:00
Tobias Geerinckx-Rice e333efd53a
gnu: libstaroffice: Update to 0.0.4. 
* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.4.
 2017-07-18 17:14:38 +02:00
宋文武 852241eb7d
system: Add 'newuidmap' and 'newgidmap' to %SETUID-PROGRAMS. 
* gnu/system.scm (%setuid-programs): Add 'newuidmap' and 'newgidmap'.
 2017-07-18 22:16:08 +08:00
宋文武 172b3e2cc2
services: sysctl: Fix typo. 
* gnu/services/sysctl.scm: Fix typo of 'make-sysctl-configuration'.
 2017-07-18 20:16:03 +08:00
Tobias Geerinckx-Rice e4e525096b
gnu: moka-icon-theme: Update to 5.3.6. 
* gnu/packages/gnome.scm (moka-icon-theme): Update to 5.3.6.
 2017-07-18 13:46:23 +02:00
Tobias Geerinckx-Rice 29ddf4b6e8
gnu: edi: Update to 0.5.1. 
* gnu/packages/enlightenment.scm (edi): Update to 0.5.1.
 2017-07-18 13:46:23 +02:00
Ricardo Wurmus 84de27c83b
gnu: enblend-enfuse: Use texlive-tiny. 
* gnu/packages/photo.scm (enblend-enfuse)[native-inputs]: Replace
texlive-minimal with texlive-tiny.
 2017-07-18 10:00:51 +02:00
Ricardo Wurmus 9840b8faaf
gnu: c-toxcore: Update to 0.1.9. 
* gnu/packages/messaging.scm (c-toxcore): Update to 0.1.9.
[build-system]: Switch to cmake-build-system.
[native-inputs]: Remove autoconf, automake, libtool, and check.
[inputs]: Rename to...
[propagated-inputs]: ...this.
[arguments]: Remove field.
 2017-07-18 09:58:56 +02:00
ng0 8b5bf30804
gnu: Rename (gnu packages gforth) to (gnu packages forth). 
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename gforth.scm to forth.scm.
* gnu/packages/gforth.scm: Rename file to forth.scm.
* gnu/packages/forth.scm: Renamed from gforth.scm.
 2017-07-18 09:58:56 +02:00
Ricardo Wurmus 8b89c1717c
gnu: python-numpy-documentation: Use texlive-union. 
* gnu/packages/python.scm (python-numpy-documentation)[native-inputs]: Replace
"texlive" with a texlive-union.
 2017-07-18 09:58:56 +02:00
Efraim Flashner 2805f9b2a0
gnu: raxml: Limit to x86_64 and i686 only. 
* gnu/packages/bioinformatics.scm (raxml)[supported-systems]: New field.
 2017-07-18 09:00:10 +03:00
Leo Famulari 4c4485f304
gnu: qemu: Fix CVE-2017-11334. 
* gnu/packages/patches/qemu-CVE-2017-11334.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
 2017-07-17 23:47:03 -04:00
Leo Famulari 144c8db9bd
gnu: chicken: Fix CVE-2017-11343. 
* gnu/packages/patches/chicken-CVE-2017-11343.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
 2017-07-17 23:47:00 -04:00
Marius Bakke 27305769de
gnu: python-cryptograpy: Update to 2.0. 
* gnu/packages/python.scm (python-cryptography-vectors,
python2-cryptography-vectors, python-cryptography, python2-cryptography):
Update to 2.0.
 2017-07-18 01:31:10 +02:00
Marius Bakke b77cc624ec
gnu: orc: Update to 0.4.27. 
* gnu/packages/gstreamer.scm (orc): Update to 0.4.27.
 2017-07-18 01:30:16 +02:00
Leo Famulari 867baed07f
gnu: imagemagick: Update to 6.9.9-0. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-0.
 2017-07-17 18:20:51 -04:00
Ludovic Courtès b19a49d015
locale: Demonadify the locale creation API. 
* gnu/system/locale.scm (single-locale-directory): Use 'computed-file'
instead of 'gexp->derivation'.
(locale-directory): Adjust accordingly and do the same.
* gnu/system.scm (operating-system-directory-base-entries): Adjust
accordingly.
 2017-07-17 23:41:36 +02:00
Ludovic Courtès 6d833b13b7
gnu: Remove glibc@2.21 and its traces. 
* gnu/packages/base.scm (glibc-2.21): Remove.
* gnu/system/locale.scm (localedef-command)[maybe-version-directory]:
Remove.  Replace call with use of 'package-version'.
(single-locale-directory): Remove 'version>=' conditional.
 2017-07-17 23:41:36 +02:00
Efraim Flashner 1cbcbc8600
gnu: screen: Update to 4.6.1. 
* gnu/packages/screen.scm (screen): Update to 4.6.1.
 2017-07-17 22:35:06 +03:00
Tobias Geerinckx-Rice 0862b95433
build, vm: Use a less common label. 
* gnu/build/vm.scm (initialize-hard-disk): Use "GuixSD_image" as label.
* gnu/system/install.scm (installation-os): Likewise.
* gnu/system/vm.scm (system-disk-image): Likewise.
 2017-07-17 20:20:24 +02:00
Alex Vong 70e7367df1
gnu: emacs-ahungry-theme: Upgrade to 1.4.0. 
* gnu/packages/emacs.scm (emacs-ahungry-theme): Upgrade to 1.4.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-17 12:06:39 -04:00
Leo Famulari da20c38f35
gnu: dash: Use the release tarball. 
* gnu/packages/shells.scm (dash)[source]: Use the release tarball
instead of a Git checkout.
[native-inputs]: Remove field.
[arguments]: Remove 'bootstrap' phase.
 2017-07-17 11:48:46 -04:00
Feng Shu 371ca85f52
gnu: font-wqy-zenhei: Use 'font-build-system'. 
* gnu/packages/fonts.scm (font-wqy-zenhei): Switch to font-build-system.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-17 15:13:41 +02:00
Feng Shu 7fc6ce46f9
gnu: font-wqy-microhei: Use 'font-build-system'. 
* gnu/packages/fonts.scm (font-wqy-microhei): Switch to font-build-system.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-17 15:13:41 +02:00
Andy Patterson 9b7ee28d57
gnu: Add Poly/ML. 
* gnu/packages/sml.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-17 15:13:41 +02:00
Efraim Flashner 7ad2a4f1d5
gnu: supertuxkart: Fix build on aarch64. 
* gnu/packages/games.scm (supertuxkart)[source]: Add patch.
* gnu/packages/patches/supertuxkart-angelscript-ftbfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-07-17 15:29:56 +03:00
Ricardo Wurmus 5beecc320e
gnu: Add sooperlooper. 
* gnu/packages/patches/sooperlooper-build-with-wx-30.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/music.scm (sooperlooper): New variable.
 2017-07-17 14:01:47 +02:00
Ricardo Wurmus c58d1b5f55
gnu: texlive-union: Silence union-build. 
* gnu/packages/tex.scm (texlive-union)[arguments]: Suppress the output of
"union-build".
 2017-07-17 14:01:47 +02:00
Ricardo Wurmus 274e3d4f3e
gnu: Add texlive-latex-type1cm. 
* gnu/packages/tex.scm (texlive-latex-type1cm): New variable.
 2017-07-17 14:01:47 +02:00
Ricardo Wurmus 1b10d49405
gnu: Add texlive-fonts-txfonts. 
* gnu/packages/tex.scm (texlive-fonts-txfonts): New variable.
 2017-07-17 14:01:47 +02:00
Ricardo Wurmus 245f1f31e8
gnu: Add texlive-latex-enumitem. 
* gnu/packages/tex.scm (texlive-latex-enumitem): New variable.
 2017-07-17 14:01:47 +02:00
Ricardo Wurmus 4701946775
gnu: texlive-dvips: Install font maps. 
* gnu/packages/tex.scm (texlive-dvips)[native-inputs]: Add dvips-font-maps and
dvips-base-enc.
[arguments]: Install them.
 2017-07-17 14:01:46 +02:00
Ricardo Wurmus 263d0c829e
gnu: texlive-union: Add texlive-fontname to defaults. 
* gnu/packages/tex.scm (texlive-union): Add texlive-fontname to the default
packages
 2017-07-17 14:01:46 +02:00
Ricardo Wurmus dea67d8afe
gnu: Add texlive-fontname. 
* gnu/packages/tex.scm (texlive-fontname): New variable.
 2017-07-17 14:01:46 +02:00
Ricardo Wurmus 2584beaedd
gnu: python-ipython: Use texlive-union. 
* gnu/packages/python.scm (python-ipython)[native-inputs]: Replace "texlive"
with a texlive-union.
 2017-07-17 14:01:46 +02:00
Ricardo Wurmus 5a1ee7d835
gnu: Add texlive-latex-pstool. 
* gnu/packages/tex.scm (texlive-latex-pstool): New variable.
 2017-07-17 14:00:17 +02:00
Ricardo Wurmus f3540dbd47
gnu: Add texlive-latex-trimspaces. 
* gnu/packages/tex.scm (texlive-latex-trimspaces): New variable.
 2017-07-17 14:00:16 +02:00
Ricardo Wurmus d770d07fb5
gnu: Add texlive-latex-psfrag. 
* gnu/packages/tex.scm (texlive-latex-psfrag): New variable.
 2017-07-17 14:00:16 +02:00
Ricardo Wurmus 8c23f238e9
gnu: Add texlive-latex-ifplatform. 
* gnu/packages/tex.scm (texlive-latex-ifplatform): New variable.
 2017-07-17 14:00:16 +02:00
Ricardo Wurmus 893e3fc1c0
gnu: Add texlive-latex-filemod. 
* gnu/packages/tex.scm (texlive-latex-filemod): New variable.
 2017-07-17 14:00:16 +02:00
Ricardo Wurmus 74e9c9a463
gnu: Add texlive-latex-environ. 
* gnu/packages/tex.scm (texlive-latex-environ): New variable.
 2017-07-17 14:00:16 +02:00
Ricardo Wurmus 3236599f50
gnu: Add texlive-latex-bigfoot. 
* gnu/packages/tex.scm (texlive-latex-bigfoot): New variable.
 2017-07-17 14:00:16 +02:00
Ricardo Wurmus fedb80ee0e
gnu: Add texlive-generic-pdftex. 
* gnu/packages/tex.scm (texlive-generic-pdftex): New variable.
 2017-07-17 14:00:15 +02:00
Ricardo Wurmus 63ed869bdd
gnu: Add texlive-latex-wrapfig. 
* gnu/packages/tex.scm (texlive-latex-wrapfig): New variable.
 2017-07-17 14:00:15 +02:00
Ricardo Wurmus 3966ebbbe7
gnu: Add texlive-latex-varwidth. 
* gnu/packages/tex.scm (texlive-latex-varwidth): New variable.
 2017-07-17 14:00:15 +02:00
Ricardo Wurmus e3088297f1
gnu: Add texlive-latex-threeparttable. 
* gnu/packages/tex.scm (texlive-latex-threeparttable): New variable.
 2017-07-17 14:00:15 +02:00
Ricardo Wurmus c73d0e9d5e
gnu: Add texlive-latex-tabulary. 
* gnu/packages/tex.scm (texlive-latex-tabulary): New variable.
 2017-07-17 14:00:15 +02:00
Ricardo Wurmus e0d307d154
gnu: Add texlive-latex-parskip. 
* gnu/packages/tex.scm (texlive-latex-parskip): New variable.
 2017-07-17 14:00:15 +02:00
Ricardo Wurmus 0de81b09a9
gnu: Add texlive-latex-upquote. 
* gnu/packages/tex.scm (texlive-latex-upquote): New variable.
 2017-07-17 14:00:14 +02:00
Ricardo Wurmus d48091bed0
gnu: Add texlive-latex-mdwtools. 
* gnu/packages/tex.scm (texlive-latex-mdwtools): New variable.
 2017-07-17 14:00:14 +02:00
Ricardo Wurmus ef1e2ef07b
gnu: Add texlive-latex-framed. 
* gnu/packages/tex.scm (texlive-latex-framed): New variable.
 2017-07-17 14:00:14 +02:00
Ricardo Wurmus a8ac7c0bb4
gnu: Add texlive-latex-etoolbox. 
* gnu/packages/tex.scm (texlive-latex-etoolbox): New variable.
 2017-07-17 14:00:14 +02:00
Ricardo Wurmus 7709d4d86a
gnu: Add texlive-latex-capt-of. 
* gnu/packages/tex.scm (texlive-latex-capt-of): New variable.
 2017-07-17 14:00:14 +02:00
Ricardo Wurmus dcc8af4a64
gnu: texlive-latex-babel: Install to generic/babel. 
* gnu/packages/tex.scm (texlive-latex-babel)[arguments]: Change tex-directory
to install to the "generic" tree.
 2017-07-17 14:00:14 +02:00
Ricardo Wurmus d9d44e84f6
gnu: texlive-union: Add texlive-generic-babel-english to defaults. 
* gnu/packages/tex.scm (texlive-union): Add "texlive-generic-babel-english" to
the default inputs.
 2017-07-17 14:00:14 +02:00
Ricardo Wurmus 876a198058
gnu: Add texlive-generic-babel-english. 
* gnu/packages/tex.scm (texlive-generic-babel-english): New variable.
 2017-07-17 14:00:13 +02:00
Ricardo Wurmus fedd77c102
gnu: Add texlive-latex-cmap. 
* gnu/packages/tex.scm (texlive-latex-cmap): New variable.
 2017-07-17 14:00:13 +02:00
Ricardo Wurmus 17dce7e5d6
gnu: Add texlive-latex-fncychap. 
* gnu/packages/tex.scm (texlive-latex-fncychap): New variable.
 2017-07-17 14:00:13 +02:00
Ricardo Wurmus 32e623d0d7
gnu: Add texlive-latex-expdlist. 
* gnu/packages/tex.scm (texlive-latex-expdlist): New variable.
 2017-07-17 14:00:13 +02:00
Ricardo Wurmus adfa7a2a8e
gnu: Add texlive-latex-eqparbox. 
* gnu/packages/tex.scm (texlive-latex-eqparbox): New variable.
 2017-07-17 14:00:13 +02:00
Ricardo Wurmus de224adba7
gnu: Add texlive-latex-draftwatermark. 
* gnu/packages/tex.scm (texlive-latex-draftwatermark): New variable.
 2017-07-17 14:00:13 +02:00
Ricardo Wurmus 7cda03bd87
gnu: Add texlive-latex-dinbrief. 
* gnu/packages/tex.scm (texlive-latex-dinbrief): New variable.
 2017-07-17 14:00:12 +02:00
Ricardo Wurmus 8e732b4994
gnu: Add texlive-latex-blindtext. 
* gnu/packages/tex.scm (texlive-latex-blindtext): New variable.
 2017-07-17 14:00:12 +02:00