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Author SHA1 Message Date
Christopher Baines c47e141deb
gnu: Remove ruby-listen-3.0. 
This was used by ruby-jekyll-watch, but that's now been upgraded and now uses
the ruby-listen package.

* gnu/packages/ruby.scm (ruby-listen-3.0): Remove this variable.
 2019-03-23 09:56:36 +00:00
Christopher Baines 6cbba8a380
gnu: ruby-jekyll-watch: Update to 2.1.2. 
* gnu/packages/ruby.scm (ruby-jekyll-watch): Update to 2.1.2.
[propagated-inputs]: Change to use ruby-listen, rather than ruby-listen-3.0.
 2019-03-23 09:56:36 +00:00
Christopher Baines 95f85d4484
gnu: Add ruby-dep. 
* gnu/packages/ruby.scm (ruby-dep): New variable.
 2019-03-23 09:56:36 +00:00
Christopher Baines a774946596
gnu: Add ruby-sass-rails. 
* gnu/packages/rails.scm (ruby-sass-rails): New variable.
 2019-03-23 09:56:33 +00:00
Leo Famulari f2096f4aa8
gnu: libb2: Update to 0.98.1. 
* gnu/packages/crypto.scm (libb2): Update to 0.98.1.
 2019-03-22 19:54:53 -04:00
Tobias Geerinckx-Rice e3eaac98d1
gnu: vpnc-scripts: Update to 20190116.1000e0f. 
* gnu/packages/vpn.scm (vpnc-scripts): Update to 20190116.1000e0f.
 2019-03-23 00:11:16 +01:00
Tobias Geerinckx-Rice 42e00f63e2
gnu: mkfontscale: Update to 1.2.1. 
* gnu/packages/xorg.scm (mkfontscale): Update to 1.2.1.
 2019-03-23 00:11:16 +01:00
Tobias Geerinckx-Rice fed4cab888
gnu: perl-datetime-timezone: Update to 2.23. 
* gnu/packages/perl.scm (perl-datetime-timezone): Update to 2.23.
 2019-03-23 00:11:16 +01:00
Tobias Geerinckx-Rice 0b50a6dbed
gnu: perl-universal-isa: Update to 1.20171012. 
* gnu/packages/perl.scm (perl-universal-isa): Update to 1.20171012.
 2019-03-23 00:11:15 +01:00
Tobias Geerinckx-Rice 8de0e90bc0
gnu: perl-json: Update to 4.02. 
* gnu/packages/perl.scm (perl-json): Update to 4.02.
 2019-03-23 00:11:15 +01:00
Tobias Geerinckx-Rice ce5b81f72b
gnu: perl-time-hires: Update to 1.9760. 
* gnu/packages/perl.scm (perl-time-hires): Update to 1.9760.
 2019-03-23 00:11:14 +01:00
Tobias Geerinckx-Rice 9682821a32
gnu: perl-business-issn: Update to 1.003. 
* gnu/packages/perl.scm (perl-business-issn): Update to 1.003.
 2019-03-23 00:11:14 +01:00
Tobias Geerinckx-Rice a6e5970efc
gnu: perl-time-duration: Update to 1.20. 
* gnu/packages/perl.scm (perl-time-duration): Update to 1.20.
 2019-03-23 00:11:14 +01:00
Tobias Geerinckx-Rice d098f40ae2
gnu: perl-text-template: Update to 1.55. 
* gnu/packages/perl.scm (perl-text-template): Update to 1.55.
 2019-03-23 00:11:13 +01:00
Tobias Geerinckx-Rice 0d344f3007
gnu: perl-moosex-role-withoverloading: Update to 0.17. 
* gnu/packages/perl.scm (perl-moosex-role-withoverloading): Update to 0.17.
 2019-03-23 00:11:13 +01:00
Tobias Geerinckx-Rice 218decd717
gnu: perl-carp-assert-more: Update to 1.16. 
* gnu/packages/perl.scm (perl-carp-assert-more): Update to 1.16.
 2019-03-23 00:11:13 +01:00
Tobias Geerinckx-Rice 6a9cecd553
gnu: perl-template-toolkit: Update to 2.28. 
* gnu/packages/perl.scm (perl-template-toolkit): Update to 2.28.
 2019-03-23 00:11:12 +01:00
Tobias Geerinckx-Rice 836aec9984
gnu: perl-carp-clan: Update to 6.07. 
* gnu/packages/perl.scm (perl-carp-clan): Update to 6.07.
 2019-03-23 00:11:12 +01:00
Tobias Geerinckx-Rice 612f11bbc5
gnu: perl-devel-checkbin: Update to 0.04. 
* gnu/packages/perl.scm (perl-devel-checkbin): Update to 0.04.
 2019-03-23 00:11:12 +01:00
Tobias Geerinckx-Rice b94a35326b
gnu: perl-datetime-format-builder: Update to 0.82. 
* gnu/packages/perl.scm (perl-datetime-format-builder): Update to 0.82.
 2019-03-23 00:11:12 +01:00
Tobias Geerinckx-Rice 695da62896
gnu: perl-unicode-normalize: Update to 1.26. 
* gnu/packages/perl.scm (perl-unicode-normalize): Update to 1.26.
 2019-03-23 00:11:11 +01:00
Tobias Geerinckx-Rice c3064aa1ba
gnu: perl-pegex: Update to 0.70. 
* gnu/packages/perl.scm (perl-pegex): Update to 0.70.
 2019-03-23 00:11:11 +01:00
Tobias Geerinckx-Rice 1a3f4684a5
gnu: perl-yaml: Update to 1.27. 
* gnu/packages/perl.scm (perl-yaml): Update to 1.27.
 2019-03-23 00:11:11 +01:00
Tobias Geerinckx-Rice d5b5d5826c
gnu: perl-uri-escape: Update to 1.76. 
* gnu/packages/perl-web.scm (perl-uri-escape): Update to 1.76.
 2019-03-23 00:11:10 +01:00
Tobias Geerinckx-Rice b0842a8e08
gnu: perl-webservice-musicbrainz: Update to 1.0.5. 
* gnu/packages/music.scm (perl-webservice-musicbrainz): Update to 1.0.5.
 2019-03-23 00:11:10 +01:00
Tobias Geerinckx-Rice 48c5e0cb84
gnu: perl-software-license: Update to 0.103014. 
* gnu/packages/license.scm (perl-software-license): Update to 0.103014.
 2019-03-23 00:11:10 +01:00
Tobias Geerinckx-Rice 35e4e3597f
gnu: perl-lingua-en-tagger: Update to 0.30. 
* gnu/packages/language.scm (perl-lingua-en-tagger): Update to 0.30.
 2019-03-23 00:11:09 +01:00
Tobias Geerinckx-Rice 6023ecab57
gnu: bind: Return #T from all phases. 
* gnu/packages/dns.scm (isc-bind)[arguments]: Move #T from ‘check’ to ‘move-to-utils’ phase.
 2019-03-23 00:11:09 +01:00
Leo Famulari d349e6d9a8
gnu: vlc: Remove obsolete patches. 
* gnu/packages/video.scm (vlc)[arguments]: Remove obsolete Qt 5.11 changes in
'patch-source' phase.
 2019-03-22 18:16:45 -04:00
Leo Famulari 10384f880a
gnu: VLC: Fix build with libssh2 > 1.8.0. 
* gnu/packages/video.scm (vlc)[arguments]: Adjust the faulty libssh2 feature
detection macro.
 2019-03-22 18:16:42 -04:00
Tomáš Čech 1b17c23ebc
gnu: Add xl2tpd. 
* gnu/packages/vpn.scm (xl2tpd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-22 22:49:35 +01:00
Ludovic Courtès 0dc7d298a3
vm: 'system-docker-image' calls 'sync' before rebooting. 
Previously we could end up silently building truncated tarballs.

* gnu/system/vm.scm (system-docker-image)[build]: Add call to 'sync'.
 2019-03-22 22:49:35 +01:00
Ludovic Courtès ac3c14fb07
system: Fix misleading comments. 
* gnu/system.scm (<operating-system>)[skeletons, services]: Fix
misleading type comments.
 2019-03-22 22:49:35 +01:00
Nicolas Goaziou c6e775a875
gnu: tlp: Update to 1.2.1. 
* gnu/packages/linux.scm (tlp): Update to 1.2.1.
 2019-03-22 19:12:34 +01:00
Nicolas Goaziou 813f866a90
gnu: emacs-xr: Update to 1.9. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.9.
 2019-03-22 18:42:26 +01:00
Ricardo Wurmus fdfaba9032
gnu: Add starlong. 
* gnu/packages/bioinformatics.scm (starlong): New variable.
 2019-03-22 16:17:01 +01:00
Tobias Geerinckx-Rice 70d6a61424
gnu: parallel: Update to 20190322. 
* gnu/packages/parallel.scm (parallel): Update to 20190322.
 2019-03-22 16:02:17 +01:00
Marco van Hulten 9716f62119
gnu: claws-mail: Enable LDAP support. 
* gnu/packages/mail.scm (claws-mail)[arguments]: Add "--enable-ldap" to
configure flags.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-22 14:42:09 +01:00
Tobias Geerinckx-Rice b97df9e570
gnu: graphicsmagick: Update to 1.3.31. 
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.31.
 2019-03-22 13:06:59 +01:00
Tobias Geerinckx-Rice 304ed82c53
gnu: graphicsmagick: Don't use NAME in source URI. 
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Hard-code NAME.
 2019-03-22 13:06:59 +01:00
Danny Milosavljevic 6a715a00d3
gnu: libgit2: Add comments. 
* gnu/packages/patches/libgit2-avoid-python.patch: Add comments.
 2019-03-22 12:00:08 +01:00
Danny Milosavljevic 03fb5ff6ae
gnu: libgit2: Avoid Python. 
* gnu/packages/patches/libgit2-avoid-python.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (libgit2)[source]: Use it.
[inputs]: Remove python.
[native-inputs]: Add guile-2.2.
 2019-03-21 23:29:10 +01:00
Ricardo Wurmus 93f178b5a8
gnu: Add r-reinforcelearn. 
* gnu/packages/cran.scm (r-reinforcelearn): New variable.
 2019-03-21 22:48:54 +01:00
Ricardo Wurmus 0c02f94f15
gnu: Add r-picante. 
* gnu/packages/cran.scm (r-picante): New variable.
 2019-03-21 22:48:31 +01:00
Ricardo Wurmus 0a3ba39633
gnu: r-assertthat: Update to 0.2.1. 
* gnu/packages/statistics.scm (r-assertthat): Update to 0.2.1.
 2019-03-21 22:48:30 +01:00
Ricardo Wurmus 340cae5631
gnu: r-rlang: Update to 0.3.2. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.2.
 2019-03-21 22:48:30 +01:00
Leo Famulari b47e5a6cc3
gnu: curl: Use hidden-package for curl's libssh2. 
This is a followup to commits c1f4e6491c
and af8f7eb4f2.

* gnu/packages/curl.scm (libssh2-1.8.0): Use hidden-package.
 2019-03-21 16:35:34 -04:00
Ricardo Wurmus decea6eef0
gnu: r-recipes: Update to 0.1.5. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.5.
[propagated-inputs]: Remove r-broom, r-ddalpha, r-dimred, and r-pls; add
r-generics, r-glue, and r-tidyr.
 2019-03-21 21:09:55 +01:00
Ricardo Wurmus 854f0603b6
gnu: r-zoo: Update to 1.8-5. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-5.
 2019-03-21 21:09:55 +01:00
Ricardo Wurmus c646d19ff7
gnu: r-mgcv: Update to 1.8-28. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-28.
 2019-03-21 21:09:55 +01:00
Ricardo Wurmus a11d29b4e9
gnu: r-expm: Update to 0.999-4. 
* gnu/packages/cran.scm (r-expm): Update to 0.999-4.
 2019-03-21 21:09:55 +01:00
Ricardo Wurmus 4c871a5537
gnu: r-pkgbuild: Update to 1.0.3. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.3.
 2019-03-21 21:09:55 +01:00
Ludovic Courtès b7489004a4
gnu: emacs-emms: Add dependency on Mutagen. 
* gnu/packages/emacs-xyz.scm (emacs-emms)[arguments]: In 'configure'
phase, for "emms-tag-editor.el", replace "mid3v2" but not "mp3info".
[inputs]: Add PYTHON-MUTAGEN.
 2019-03-21 20:50:10 +01:00
Jack Hill ea4a1e5d0b
gnu: Add emacs-semantic-refactor. 
* gnu/packages/emacs-xyz.scm (emacs-semantic-refactor): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-03-21 20:48:12 +01:00
Robert Smith 2f87048dbe
gnu: elixir: Update to 1.8.1. 
* gnu/packages/elixir.scm (elixir): Update to 1.8.1.
[source](patches): New field.
[home-page]: Use HTTPS.
* gnu/packages/patches/elixir-path-length.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-03-21 20:48:12 +01:00
Marius Bakke 7ac8d96d77
gnu: gnupg: Update to 2.2.14. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.14.
 2019-03-21 19:23:49 +01:00
Marius Bakke b4d77cfa70
gnu: strace: Update to 5.0. 
* gnu/packages/linux.scm (strace): Update to 5.0.
 2019-03-21 19:23:49 +01:00
Marius Bakke 915618f2ff
gnu: glm: Update to 0.9.9.4. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.4.
 2019-03-21 19:23:48 +01:00
Marius Bakke 941699b343
gnu: tbb: Update to 2019_U5. 
* gnu/packages/tbb.scm (tbb): Update to 2019_U5.
[source]: Use GIT-FETCH because releases are no longer available.
 2019-03-21 19:23:48 +01:00
Marius Bakke 05109e8ef8
gnu: varnish: Update to 6.2.0. 
* gnu/packages/web.scm (varnish): Update to 6.2.0.
[arguments]: Remove obsolete configure flag.  Add substitution for /bin/rm.
 2019-03-21 19:23:48 +01:00
Marius Bakke c11f86ff16
gnu: libgit2: Update to 0.28.1. 
* gnu/packages/patches/libgit2-oom-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/version-control.scm (libgit2): Update to 0.28.1.
[source](patches): Remove 'libgit2-oom-test.patch'.
 2019-03-21 19:23:48 +01:00
Marius Bakke 7c1693df42
gnu: elogind: Update to 241.1. 
* gnu/packages/freedesktop.scm (elogind): Update to 241.1.
 2019-03-21 19:23:48 +01:00
Marius Bakke c1f4e6491c
gnu: curl: Restore derivation. 
Commit af8f7eb4f2 accidentally changed the cURL
derivation.  Remove use of HIDDEN-PACKAGE and restore input order to prevent a
large number of rebuilds.

* gnu/packages/ssh.scm (libssh2-1.8.0): Move from here ...
* gnu/packages/curl.scm (libssh2-1.8.0): ... to here.  Don't use
HIDDEN-PACKAGE and make it non-public.
(curl)[inputs]: Move LIBSSH2-1.8.0 where it was before af8f7eb4f2.
 2019-03-21 19:23:47 +01:00
Leo Famulari af8f7eb4f2
gnu: libssh2: Update to 1.8.1 [security fixes]. 
Fixes CVE-2019-{3855,3856,3857,3858,3859,3860,3861,3862,3863}.

* gnu/packages/ssh.scm (libssh2): Update to 1.8.1.
(libssh2-1.8.0): New variable.
* gnu/packages/curl.scm (curl)[inputs]: Use libssh2-1.8.0.
 2019-03-21 13:37:01 -04:00
Brett Gilio 1e70d72b18
gnu: emacs-hackernews: Update to 0.5.0-1-916c3da. 
* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.5.0-1-916c3da.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-21 09:34:09 +01:00
Tobias Geerinckx-Rice f1aa44ada9
gnu: qwt: Update to 6.1.4. 
* gnu/packages/qt.scm (qwt): Update to 6.1.4.
 2019-03-21 04:07:03 +01:00
Tobias Geerinckx-Rice 5cf3e6fcd5
gnu: jekyll: Update to 3.8.5. 
* gnu/packages/ruby.scm (jekyll): Update to 3.8.5.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice c664ebcc31
gnu: ruby-fivemat: Update to 1.3.7. 
* gnu/packages/ruby.scm (ruby-fivemat): Update to 1.3.7.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice bcf1fe5bbc
gnu: ruby-activesupport: Update to 5.2.2.1. 
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.2.2.1.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice e2fbc27210
gnu: ruby-rails: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-rails): Update to 5.2.2.1.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice 1835fc26b5
gnu: ruby-railties: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-railties): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice 5be0aedf76
gnu: ruby-actionmailer: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actionmailer): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice e16dd18981
gnu: ruby-activestorage: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activestorage): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice fbc2309f6d
gnu: ruby-activejob: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activejob): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice 2a737e80ce
gnu: ruby-actioncable: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actioncable): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice 24c704af8c
gnu: ruby-actionpack: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actionpack): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice e8df5a50c9
gnu: ruby-actionview: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actionview): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice 0fb8ed1734
gnu: ruby-activerecord: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activerecord): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice 22468de494
gnu: ruby-activemodel: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activemodel): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice 04ef07fecb
gnu: libmatroska: Update to 1.5.0. 
* gnu/packages/video.scm (libmatroska): Update to 1.5.0.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice 309f340879
gnu: libmatroska: Don't use NAME in source URI. 
* gnu/packages/video.scm (libmatroska)[source]: Hard-code NAME.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice bd300261af
gnu: python-python-gast: Update to 0.2.2. 
* gnu/packages/python-xyz.scm (python-python-gast): Update to 0.2.2.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice 91b61f0291
gnu: python-latexcodec: Update to 1.0.6. 
* gnu/packages/python-xyz.scm (python-latexcodec): Update to 1.0.6.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice ad1acb8111
gnu: python-pyro4: Update to 4.75. 
* gnu/packages/python-xyz.scm (python-pyro4): Update to 4.75.
 2019-03-21 04:06:58 +01:00
Tobias Geerinckx-Rice e6b244a588
gnu: plantuml: Update to 1.2019.3. 
* gnu/packages/uml.scm (plantuml): Update to 1.2019.3.
 2019-03-21 04:06:58 +01:00
Tobias Geerinckx-Rice 58ab7f2961
gnu: ghostwriter: Update to 1.7.4. 
* gnu/packages/text-editors.scm (ghostwriter): Update to 1.7.4.
 2019-03-21 04:06:58 +01:00
Tobias Geerinckx-Rice 98e7307dd3
gnu: kakoune: Update to 2019.01.20. 
* gnu/packages/text-editors.scm (kakoune): Update to 2019.01.20.
 2019-03-21 04:06:58 +01:00
Tobias Geerinckx-Rice a1cb69280c
gnu: kakoune: Don't use NAME in source URI. 
* gnu/packages/text-editors.scm (kakoune)[source]: Hard-code NAME.
 2019-03-21 04:06:57 +01:00
Tobias Geerinckx-Rice f86d56a7af
gnu: terraform-docs: Update to 0.6.0. 
* gnu/packages/terraform.scm (terraform-docs): Update to 0.6.0.
 2019-03-21 04:06:57 +01:00
Ricardo Wurmus 6cea61ebb5
gnu: r-spam: Update to 2.2-2. 
* gnu/packages/cran.scm (r-spam): Update to 2.2-2.
 2019-03-21 00:02:52 +01:00
Ricardo Wurmus a7524f7000
gnu: r-sjstats: Update to 0.17.4. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.4.
[propagated-inputs]: Remove r-bayesplot, r-coin, r-crayon, r-glmmtmb, r-nlme,
and r-pwr; add r-insight.
 2019-03-21 00:02:52 +01:00
Ricardo Wurmus 9d047572c8
gnu: r-gsl: Update to 2.1-5. 
* gnu/packages/cran.scm (r-gsl): Update to 2.1-5.
 2019-03-21 00:02:52 +01:00
Ricardo Wurmus f69ba00f09
gnu: r-coin: Update to 1.3-0. 
* gnu/packages/cran.scm (r-coin): Update to 1.3-0.
[propagated-inputs]: Add r-libcoin and r-matrixstats.
 2019-03-21 00:02:52 +01:00
Ricardo Wurmus c9ba1155a2
gnu: r-fs: Update to 1.2.7. 
* gnu/packages/cran.scm (r-fs): Update to 1.2.7.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus fef93da89d
gnu: r-ggeffects: Update to 0.9.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.9.0.
[propagated-inputs]: Remove r-crayon, r-ggplot2, r-lme4, r-prediction,
r-sjstats, r-tidyr; add r-insight.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus a3daf011cc
gnu: r-proc: Update to 1.14.0. 
* gnu/packages/cran.scm (r-proc): Update to 1.14.0.
[propagated-inputs]: Remove r-ggplot2.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 20b375ecd8
gnu: r-huge: Update to 1.3.1. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.1.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 8aef1ea6fd
gnu: r-rgl: Update to 0.100.19. 
* gnu/packages/cran.scm (r-rgl): Update to 0.100.19.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 37317189a7
gnu: r-argparse: Update to 2.0.1. 
* gnu/packages/cran.scm (r-argparse): Update to 2.0.1.
[propagated-inputs]: Remove r-getopt.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus fcb8456577
gnu: r-findpython: Update to 1.0.5. 
* gnu/packages/cran.scm (r-findpython): Update to 1.0.5.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 31af2e7f92
gnu: r-sjmisc: Update to 2.7.9. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.9.
[propagated-inputs]: Remove r-broom, r-crayon, r-stringdist, r-stringr, and
r-tidyr.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 1adcbeda5f
gnu: r-ncdf4: Update to 1.16.1. 
* gnu/packages/cran.scm (r-ncdf4): Update to 1.16.1.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 5e16dff99c
gnu: r-sjlabelled: Update to 1.0.17. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.17.
[propagated-inputs]: Remove r-broom, r-prediction, and r-snakecase; add
r-insight.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 83bfddd1b0
gnu: r-gmp: Update to 0.5-13.5. 
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.5.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus ae7e6f0620
gnu: r-mcmc: Update to 0.9-6. 
* gnu/packages/cran.scm (r-mcmc): Update to 0.9-6.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 7e6c5ebbea
gnu: r-gamlss-dist: Update to 5.1-3. 
* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-3.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 1a38c31456
gnu: r-future: Update to 1.12.0. 
* gnu/packages/cran.scm (r-future): Update to 1.12.0.
 2019-03-21 00:02:51 +01:00
Ricardo Wurmus 5ccf16c746
gnu: r-msir: Update to 1.3.2. 
* gnu/packages/cran.scm (r-msir): Update to 1.3.2.
[propagated-inputs]: Remove r-rgl.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus fc82a8f577
gnu: r-e1071: Update to 1.7-1. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 6720b37810
gnu: r-purrr: Update to 0.3.2. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.2.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 08859c8d27
gnu: r-mclust: Update to 5.4.3. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.3.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus c17ee12cf7
gnu: r-robustbase: Update to 0.93-4. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-4.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus e469e10e20
gnu: r-zip: Update to 2.0.1. 
* gnu/packages/cran.scm (r-zip): Update to 2.0.1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 35fe7882a8
gnu: r-tinytex: Update to 0.11. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.11.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 76cbfb5ad5
gnu: r-processx: Update to 3.3.0. 
* gnu/packages/cran.scm (r-processx): Update to 3.3.0.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 78e2973827
gnu: r-cli: Update to 1.1.0. 
* gnu/packages/cran.scm (r-cli): Update to 1.1.0.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 5275f9d7f9
gnu: r-ordinal: Update to 2019.3-9. 
* gnu/packages/cran.scm (r-ordinal): Update to 2019.3-9.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 739135b2be
gnu: r-lmoments: Update to 1.3-1. 
* gnu/packages/cran.scm (r-lmoments): Update to 1.3-1.
[propagated-inputs]: Add r-rcpp and r-rcpparmadillo.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 06070c0397
gnu: r-rcpp: Update to 1.0.1. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus b21eb34776
gnu: r-glue: Update to 1.3.1. 
* gnu/packages/cran.scm (r-glue): Update to 1.3.1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus f9bc918b81
gnu: r-colorspace: Update to 1.4-1. 
* gnu/packages/cran.scm (r-colorspace): Update to 1.4-1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 50d063b511
gnu: r-readxl: Update to 1.3.1. 
* gnu/packages/cran.scm (r-readxl): Update to 1.3.1.
 2019-03-21 00:02:50 +01:00
Ricardo Wurmus 1d7049335f
gnu: r-rmarkdown: Update to 1.12. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.12.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 33fba4cea8
gnu: r-rcpparmadillo: Update to 0.9.200.7.1. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.7.1.
[native-inputs]: Add ghc-pandoc, ghc-pandoc-citeproc, and r-rmarkdown.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 2391e97c4d
gnu: r-httpuv: Update to 1.5.0. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.0.
[native-inputs]: Remove pkg-config; move r-rcpp from here...
[propagated-inputs]: ...to here; add r-r6.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus c2b45ac578
gnu: r-diversitree: Update to 0.9-11. 
* gnu/packages/bioinformatics.scm (r-diversitree): Update to 0.9-11.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 1081e8266f
gnu: r-rstudioapi: Update to 0.10. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.10.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 086ca4deae
gnu: r-git2r: Update to 0.25.2. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.25.2.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 7590441976
gnu: r-tibble: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.1.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 86c8b2f5f5
gnu: r-knitr: Update to 1.22. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.22.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus b6c5b0aca2
gnu: r-highr: Update to 0.8. 
* gnu/packages/statistics.scm (r-highr): Update to 0.8.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 1f2862b1be
gnu: r-lazyeval: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.2.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus a9c8127290
gnu: r-stringi: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.4.3.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 2bf224d0ca
gnu: r-permute: Update to 0.9-5. 
* gnu/packages/statistics.scm (r-permute): Update to 0.9-5.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 35663627fb
gnu: r-matrix: Update to 1.2-16. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-16.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 95bf4508e5
gnu: qtractor: Update to 0.9.6. 
* gnu/packages/music.scm (qtractor): Update to 0.9.6.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 8e91ad0b5c
gnu: r-ape: Update to 5.3. 
* gnu/packages/cran.scm (r-ape): Update to 5.3.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus db39269c89
gnu: r-maldiquant: Update to 1.19.2. 
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.19.2.
 2019-03-21 00:02:49 +01:00
Ricardo Wurmus 42f344faf7
gnu: Add r-libcoin. 
* gnu/packages/cran.scm (r-libcoin): New variable.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus d1021421d9
gnu: r-callr: Update to 3.2.0. 
* gnu/packages/cran.scm (r-callr): Update to 3.2.0.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus df04509932
gnu: r-dendextend: Update to 1.10.0. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.10.0.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus ffd6e2fd8f
gnu: r-sys: Update to 3.1. 
* gnu/packages/cran.scm (r-sys): Update to 3.1.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus 28d0eb2565
gnu: r-diversitree: Fix typo. 
* gnu/packages/bioinformatics.scm (r-diversitree)[propagated-inputs]: Fix typo
in package labels.
 2019-03-21 00:02:48 +01:00
Ricardo Wurmus d14c770d55
gnu: Add r-insight. 
* gnu/packages/cran.scm (r-insight): New variable.
 2019-03-21 00:02:48 +01:00
Mark H Weaver 8b672b2c48
gnu: blender: Restore version 2.79b for systems without OpenGL 3. 
Fixes <https://bugs.gnu.org/33882>.

* gnu/packages/graphics.scm (blender-2.79): New variable.
(blender)[description]: Remove obsolete claim that the stable
release no longer works in Guix.
* gnu/packages/patches/blender-2.79-newer-ffmpeg.patch,
gnu/packages/patches/blender-2.79-python-3.7-fix.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-03-20 18:20:36 -04:00
Ricardo Wurmus 933cc19684
gnu: r-annotationhub: Update to 2.14.5. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.5.
 2019-03-20 22:32:37 +01:00
Ricardo Wurmus e49d5d34ed
gnu: r-genomicfeatures: Update to 1.34.6. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.6.
 2019-03-20 22:32:32 +01:00
Ricardo Wurmus 2b83d218d8
gnu: r-variantannotation: Update to 1.28.13. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.13.
 2019-03-20 22:32:25 +01:00
Ricardo Wurmus 0adb6f207b
gnu: r-category: Update to 2.48.1. 
* gnu/packages/bioinformatics.scm (r-category): Update to 2.48.1.
 2019-03-20 22:32:17 +01:00
Ricardo Wurmus e014dc78f0
gnu: r-dexseq: Update to 1.28.3. 
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.3.
 2019-03-20 22:32:11 +01:00