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42268 Commits

Author SHA1 Message Date
Ricardo Wurmus fdfaba9032
gnu: Add starlong. 
* gnu/packages/bioinformatics.scm (starlong): New variable.
 2019-03-22 16:17:01 +01:00
Tobias Geerinckx-Rice 70d6a61424
gnu: parallel: Update to 20190322. 
* gnu/packages/parallel.scm (parallel): Update to 20190322.
 2019-03-22 16:02:17 +01:00
Marco van Hulten 9716f62119
gnu: claws-mail: Enable LDAP support. 
* gnu/packages/mail.scm (claws-mail)[arguments]: Add "--enable-ldap" to
configure flags.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-22 14:42:09 +01:00
Tobias Geerinckx-Rice b97df9e570
gnu: graphicsmagick: Update to 1.3.31. 
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.31.
 2019-03-22 13:06:59 +01:00
Tobias Geerinckx-Rice 304ed82c53
gnu: graphicsmagick: Don't use NAME in source URI. 
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Hard-code NAME.
 2019-03-22 13:06:59 +01:00
Danny Milosavljevic 6a715a00d3
gnu: libgit2: Add comments. 
* gnu/packages/patches/libgit2-avoid-python.patch: Add comments.
 2019-03-22 12:00:08 +01:00
Danny Milosavljevic 03fb5ff6ae
gnu: libgit2: Avoid Python. 
* gnu/packages/patches/libgit2-avoid-python.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (libgit2)[source]: Use it.
[inputs]: Remove python.
[native-inputs]: Add guile-2.2.
 2019-03-21 23:29:10 +01:00
Ricardo Wurmus 93f178b5a8
gnu: Add r-reinforcelearn. 
* gnu/packages/cran.scm (r-reinforcelearn): New variable.
 2019-03-21 22:48:54 +01:00
Ricardo Wurmus 0c02f94f15
gnu: Add r-picante. 
* gnu/packages/cran.scm (r-picante): New variable.
 2019-03-21 22:48:31 +01:00
Ricardo Wurmus 0a3ba39633
gnu: r-assertthat: Update to 0.2.1. 
* gnu/packages/statistics.scm (r-assertthat): Update to 0.2.1.
 2019-03-21 22:48:30 +01:00
Ricardo Wurmus 340cae5631
gnu: r-rlang: Update to 0.3.2. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.2.
 2019-03-21 22:48:30 +01:00
Leo Famulari b47e5a6cc3
gnu: curl: Use hidden-package for curl's libssh2. 
This is a followup to commits c1f4e6491c
and af8f7eb4f2.

* gnu/packages/curl.scm (libssh2-1.8.0): Use hidden-package.
 2019-03-21 16:35:34 -04:00
Ricardo Wurmus decea6eef0
gnu: r-recipes: Update to 0.1.5. 
* gnu/packages/cran.scm (r-recipes): Update to 0.1.5.
[propagated-inputs]: Remove r-broom, r-ddalpha, r-dimred, and r-pls; add
r-generics, r-glue, and r-tidyr.
 2019-03-21 21:09:55 +01:00
Ricardo Wurmus 854f0603b6
gnu: r-zoo: Update to 1.8-5. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-5.
 2019-03-21 21:09:55 +01:00
Ricardo Wurmus c646d19ff7
gnu: r-mgcv: Update to 1.8-28. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-28.
 2019-03-21 21:09:55 +01:00
Ricardo Wurmus a11d29b4e9
gnu: r-expm: Update to 0.999-4. 
* gnu/packages/cran.scm (r-expm): Update to 0.999-4.
 2019-03-21 21:09:55 +01:00
Ricardo Wurmus 4c871a5537
gnu: r-pkgbuild: Update to 1.0.3. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.3.
 2019-03-21 21:09:55 +01:00
Ludovic Courtès b7489004a4
gnu: emacs-emms: Add dependency on Mutagen. 
* gnu/packages/emacs-xyz.scm (emacs-emms)[arguments]: In 'configure'
phase, for "emms-tag-editor.el", replace "mid3v2" but not "mp3info".
[inputs]: Add PYTHON-MUTAGEN.
 2019-03-21 20:50:10 +01:00
Jack Hill ea4a1e5d0b
gnu: Add emacs-semantic-refactor. 
* gnu/packages/emacs-xyz.scm (emacs-semantic-refactor): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-03-21 20:48:12 +01:00
Robert Smith 2f87048dbe
gnu: elixir: Update to 1.8.1. 
* gnu/packages/elixir.scm (elixir): Update to 1.8.1.
[source](patches): New field.
[home-page]: Use HTTPS.
* gnu/packages/patches/elixir-path-length.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-03-21 20:48:12 +01:00
Marius Bakke 7ac8d96d77
gnu: gnupg: Update to 2.2.14. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.14.
 2019-03-21 19:23:49 +01:00
Marius Bakke b4d77cfa70
gnu: strace: Update to 5.0. 
* gnu/packages/linux.scm (strace): Update to 5.0.
 2019-03-21 19:23:49 +01:00
Marius Bakke 915618f2ff
gnu: glm: Update to 0.9.9.4. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.4.
 2019-03-21 19:23:48 +01:00
Marius Bakke 941699b343
gnu: tbb: Update to 2019_U5. 
* gnu/packages/tbb.scm (tbb): Update to 2019_U5.
[source]: Use GIT-FETCH because releases are no longer available.
 2019-03-21 19:23:48 +01:00
Marius Bakke 05109e8ef8
gnu: varnish: Update to 6.2.0. 
* gnu/packages/web.scm (varnish): Update to 6.2.0.
[arguments]: Remove obsolete configure flag.  Add substitution for /bin/rm.
 2019-03-21 19:23:48 +01:00
Marius Bakke c11f86ff16
gnu: libgit2: Update to 0.28.1. 
* gnu/packages/patches/libgit2-oom-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/version-control.scm (libgit2): Update to 0.28.1.
[source](patches): Remove 'libgit2-oom-test.patch'.
 2019-03-21 19:23:48 +01:00
Marius Bakke 7c1693df42
gnu: elogind: Update to 241.1. 
* gnu/packages/freedesktop.scm (elogind): Update to 241.1.
 2019-03-21 19:23:48 +01:00
Marius Bakke ad4910eec0
build-system/meson: Add #:allowed-references and #:disallowed-references. 
* guix/build-system/meson.scm (meson-build): Add support for
  #:allowed-references and #:disallowed-references.
 2019-03-21 19:23:47 +01:00
Marius Bakke c1f4e6491c
gnu: curl: Restore derivation. 
Commit af8f7eb4f2 accidentally changed the cURL
derivation.  Remove use of HIDDEN-PACKAGE and restore input order to prevent a
large number of rebuilds.

* gnu/packages/ssh.scm (libssh2-1.8.0): Move from here ...
* gnu/packages/curl.scm (libssh2-1.8.0): ... to here.  Don't use
HIDDEN-PACKAGE and make it non-public.
(curl)[inputs]: Move LIBSSH2-1.8.0 where it was before af8f7eb4f2.
 2019-03-21 19:23:47 +01:00
Leo Famulari af8f7eb4f2
gnu: libssh2: Update to 1.8.1 [security fixes]. 
Fixes CVE-2019-{3855,3856,3857,3858,3859,3860,3861,3862,3863}.

* gnu/packages/ssh.scm (libssh2): Update to 1.8.1.
(libssh2-1.8.0): New variable.
* gnu/packages/curl.scm (curl)[inputs]: Use libssh2-1.8.0.
 2019-03-21 13:37:01 -04:00
Brett Gilio 1e70d72b18
gnu: emacs-hackernews: Update to 0.5.0-1-916c3da. 
* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.5.0-1-916c3da.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-03-21 09:34:09 +01:00
Tobias Geerinckx-Rice f1aa44ada9
gnu: qwt: Update to 6.1.4. 
* gnu/packages/qt.scm (qwt): Update to 6.1.4.
 2019-03-21 04:07:03 +01:00
Tobias Geerinckx-Rice 5cf3e6fcd5
gnu: jekyll: Update to 3.8.5. 
* gnu/packages/ruby.scm (jekyll): Update to 3.8.5.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice c664ebcc31
gnu: ruby-fivemat: Update to 1.3.7. 
* gnu/packages/ruby.scm (ruby-fivemat): Update to 1.3.7.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice bcf1fe5bbc
gnu: ruby-activesupport: Update to 5.2.2.1. 
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.2.2.1.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice e2fbc27210
gnu: ruby-rails: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-rails): Update to 5.2.2.1.
 2019-03-21 04:07:02 +01:00
Tobias Geerinckx-Rice 1835fc26b5
gnu: ruby-railties: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-railties): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice 5be0aedf76
gnu: ruby-actionmailer: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actionmailer): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice e16dd18981
gnu: ruby-activestorage: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activestorage): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice fbc2309f6d
gnu: ruby-activejob: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activejob): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice 2a737e80ce
gnu: ruby-actioncable: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actioncable): Update to 5.2.2.1.
 2019-03-21 04:07:01 +01:00
Tobias Geerinckx-Rice 24c704af8c
gnu: ruby-actionpack: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actionpack): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice e8df5a50c9
gnu: ruby-actionview: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-actionview): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice 0fb8ed1734
gnu: ruby-activerecord: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activerecord): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice 22468de494
gnu: ruby-activemodel: Update to 5.2.2.1. 
* gnu/packages/rails.scm (ruby-activemodel): Update to 5.2.2.1.
 2019-03-21 04:07:00 +01:00
Tobias Geerinckx-Rice 04ef07fecb
gnu: libmatroska: Update to 1.5.0. 
* gnu/packages/video.scm (libmatroska): Update to 1.5.0.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice 309f340879
gnu: libmatroska: Don't use NAME in source URI. 
* gnu/packages/video.scm (libmatroska)[source]: Hard-code NAME.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice bd300261af
gnu: python-python-gast: Update to 0.2.2. 
* gnu/packages/python-xyz.scm (python-python-gast): Update to 0.2.2.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice 91b61f0291
gnu: python-latexcodec: Update to 1.0.6. 
* gnu/packages/python-xyz.scm (python-latexcodec): Update to 1.0.6.
 2019-03-21 04:06:59 +01:00
Tobias Geerinckx-Rice ad1acb8111
gnu: python-pyro4: Update to 4.75. 
* gnu/packages/python-xyz.scm (python-pyro4): Update to 4.75.
 2019-03-21 04:06:58 +01:00