7f4957b24e
gnu: r-yarn: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.10.0.
2019-05-06 00:14:57 +02:00
2feea2d22a
gnu: r-quantro: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.18.0.
2019-05-06 00:14:57 +02:00
f48e29daa3
gnu: r-yaqcaffy: Update to 1.44.0.
...
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.44.0.
2019-05-06 00:14:57 +02:00
38c5d13a73
gnu: r-simpleaffy: Update to 2.60.0.
...
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.60.0.
2019-05-06 00:14:57 +02:00
56576bea97
gnu: r-gcrma: Update to 2.56.0.
...
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.56.0.
2019-05-06 00:14:57 +02:00
edba69b2ff
gnu: r-yapsa: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.10.0.
2019-05-06 00:14:57 +02:00
3cdc5d1a7b
gnu: r-somaticsignatures: Update to 2.20.0.
...
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.20.0.
2019-05-06 00:14:56 +02:00
128c6d59f0
gnu: r-gtrellis: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.0.
2019-05-06 00:14:56 +02:00
1269a926c0
gnu: r-yamss: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.10.0.
2019-05-06 00:14:56 +02:00
2a6d838337
gnu: r-ebimage: Update to 4.26.0.
...
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.26.0.
2019-05-06 00:14:56 +02:00
b68a9e80f4
gnu: r-aucell: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.6.0.
2019-05-06 00:14:56 +02:00
9da2021f49
gnu: r-allelicimbalance: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.22.0.
2019-05-06 00:14:56 +02:00
ee1a45d719
gnu: r-annotationtools: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.58.0.
2019-05-06 00:14:56 +02:00
69a2ec5447
gnu: r-annotationfuncs: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.34.0.
2019-05-06 00:14:56 +02:00
e2e1dea2bb
gnu: r-abaenrichment: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.0.
2019-05-06 00:14:55 +02:00
bab06a6ff3
gnu: r-gofuncr: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.4.0.
2019-05-06 00:14:55 +02:00
bcc233c1a6
gnu: r-atacseqqc: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.0.
[propagated-inputs]: Add r-edger.
2019-05-06 00:14:55 +02:00
19ee76379c
gnu: r-genomicscores: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.8.0.
2019-05-06 00:14:55 +02:00
aa0ebfd2eb
gnu: r-motifstack: Update to 1.28.0.
...
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.28.0.
[propagated-inputs]: Replace r-grimport with r-grimport2.
2019-05-06 00:14:55 +02:00
f7a495b159
gnu: r-motiv: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.40.0.
2019-05-06 00:14:55 +02:00
a5860ebe87
gnu: r-rgadem: Update to 2.31.0.
...
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.31.0.
2019-05-06 00:14:54 +02:00
e33c25ff2c
gnu: r-bacon: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.12.0.
2019-05-06 00:14:54 +02:00
b7ddf0f048
gnu: r-abseqr: Update to 1.2.0.
...
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.2.0.
2019-05-06 00:14:54 +02:00
1aadddeaa9
gnu: r-a4: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4): Update to 1.32.0.
2019-05-06 00:14:54 +02:00
ae1730ae1a
gnu: r-a4base: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.32.0.
2019-05-06 00:14:54 +02:00
e5a36543ac
gnu: r-a4reporting: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.32.0.
2019-05-06 00:14:54 +02:00
0b6091621f
gnu: r-a4preproc: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.32.0.
2019-05-06 00:14:54 +02:00
82de77da5a
gnu: r-a4classif: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.32.0.
2019-05-06 00:14:53 +02:00
b077e3db2a
gnu: r-a4core: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.32.0.
2019-05-06 00:14:53 +02:00
8bef9df4d4
gnu: r-annaffy: Update to 1.56.0.
...
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.56.0.
2019-05-06 00:14:53 +02:00
8265a1115e
gnu: r-mlinterfaces: Update to 1.64.0.
...
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.0.
2019-05-06 00:14:53 +02:00
1a3e33be23
gnu: r-clusterprofiler: Update to 3.12.0.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.12.0.
2019-05-06 00:14:53 +02:00
77d28d665c
gnu: r-enrichplot: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.4.0.
2019-05-06 00:14:53 +02:00
1990ff9d10
gnu: r-dose: Update to 3.10.0.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.0.
2019-05-06 00:14:53 +02:00
ebffd24c10
gnu: r-fgsea: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.10.0.
[propagated-inputs]: Add r-bh.
2019-05-06 00:14:53 +02:00
3e5ee6f69f
gnu: r-sigpathway: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.52.0.
2019-05-06 00:14:53 +02:00
0a41b5db95
gnu: r-anota: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-anota): Update to 1.32.0.
2019-05-06 00:14:52 +02:00
24cf7bad99
gnu: r-gosemsim: Update to 2.10.0.
...
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.10.0.
2019-05-06 00:14:52 +02:00
376d1fe759
gnu: r-heatplus: Update to 2.30.0.
...
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.30.0.
2019-05-06 00:14:52 +02:00
c2effdedc0
gnu: r-varianttools: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.26.0.
2019-05-06 00:14:52 +02:00
bc083ecab8
gnu: r-triform: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-triform): Update to 1.26.0.
2019-05-06 00:14:52 +02:00
2ee91179d1
gnu: r-ioniser: Update to 2.8.0.
...
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.8.0.
2019-05-06 00:14:52 +02:00
48c2a7eb39
gnu: r-linnorm: Update to 2.8.0.
...
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.8.0.
2019-05-06 00:14:52 +02:00
5551b07cde
gnu: r-lumi: Update to 2.36.0.
...
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.36.0.
2019-05-06 00:14:51 +02:00
2986b51ffe
gnu: r-methylumi: Update to 2.30.0.
...
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.30.0.
2019-05-06 00:14:51 +02:00
8c0fae3cd4
gnu: r-minfi: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.30.0.
2019-05-06 00:14:51 +02:00
693a98056c
gnu: r-bumphunter: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.26.0.
2019-05-06 00:14:51 +02:00
409f4dd652
gnu: r-siggenes: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.58.0.
[propagated-inputs]: Add r-scrime.
2019-05-06 00:14:51 +02:00
fadc6db82d
gnu: r-illuminaio: Update to 0.26.0.
...
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.26.0.
2019-05-06 00:14:51 +02:00
2d4430877a
gnu: r-geoquery: Update to 2.52.0.
...
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.52.0.
2019-05-06 00:14:51 +02:00
26c72fffc1
gnu: r-scone: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-scone): Update to 1.8.0.
2019-05-06 00:14:50 +02:00
7baa59ed4d
gnu: r-scdd: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.8.0.
2019-05-06 00:14:50 +02:00
6a2c58b7e0
gnu: r-noiseq: Update to 2.28.0.
...
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.28.0.
2019-05-06 00:14:50 +02:00
78b6326785
gnu: r-monocle: Update to 2.12.0.
...
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.12.0.
2019-05-06 00:14:50 +02:00
a0ff725d6a
gnu: r-mast: Update to 1.10.0.
...
* gnu/packages/bioconductor.scm (r-mast): Update to 1.10.0.
[propagated-inputs]: Add r-blme.
2019-05-06 00:14:50 +02:00
3fd2ea8883
gnu: r-icobra: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.0.
2019-05-06 00:14:50 +02:00
bcd8b7a9bd
gnu: r-ihw: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.12.0.
2019-05-06 00:14:50 +02:00
61c79d55e3
gnu: r-lpsymphony: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.12.0.
2019-05-06 00:14:49 +02:00
4a3c47e940
gnu: r-ebseq: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.24.0.
2019-05-06 00:14:49 +02:00
301c4ff12a
gnu: r-deds: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-deds): Update to 1.58.0.
2019-05-06 00:14:49 +02:00
d5f3c0d09e
gnu: r-dnacopy: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.58.0.
2019-05-06 00:14:49 +02:00
d941918599
gnu: r-copynumber: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.24.0.
2019-05-06 00:14:49 +02:00
58a43fc28e
gnu: r-chipexoqual: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.8.0.
2019-05-06 00:14:49 +02:00
8d3d0c3abe
gnu: r-savr: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-savr): Update to 1.22.0.
2019-05-06 00:14:49 +02:00
0aa72f2d1e
gnu: r-destiny: Update to 2.14.0.
...
* gnu/packages/bioconductor.scm (r-destiny): Update to 2.14.0.
[propagated-inputs]: Remove r-fnn and r-hmisc; add r-ggplot2.
2019-05-06 00:14:48 +02:00
6fc161fc3e
gnu: r-biocneighbors: Update to 1.2.0.
...
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.2.0.
[propagated-inputs]: Add r-biocgenerics and r-rcpphnsw.
2019-05-06 00:14:48 +02:00
d8771f5fd6
gnu: r-ruvseq: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.18.0.
2019-05-06 00:14:48 +02:00
774e499cec
gnu: r-dnabarcodes: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.14.0.
2019-05-06 00:14:48 +02:00
3649d046a6
gnu: r-inspect: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.14.0.
2019-05-06 00:14:48 +02:00
5dce71535f
gnu: r-plgem: Update to 1.56.0.
...
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.56.0.
2019-05-06 00:14:48 +02:00
5bf7eb49f6
gnu: r-rots: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-rots): Update to 1.12.0.
2019-05-06 00:14:48 +02:00
07252952b7
gnu: r-glimma: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.12.0.
2019-05-06 00:14:47 +02:00
40f0ee43a0
gnu: r-goseq: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.36.0.
2019-05-06 00:14:47 +02:00
7a5d729af1
gnu: r-ctc: Update to 1.58.0.
...
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.58.0.
2019-05-06 00:14:47 +02:00
1236ce8e22
gnu: r-genomicinteractions: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.0.
2019-05-06 00:14:47 +02:00
176a264c7c
gnu: r-interactionset: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.12.0.
2019-05-06 00:14:47 +02:00
eff6b2eb12
gnu: r-riboseqr: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.18.0.
2019-05-06 00:14:47 +02:00
7d5acf7a25
gnu: r-riboprofiling: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.14.0.
2019-05-06 00:14:47 +02:00
1ddd4af5a0
gnu: r-chipcomp: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.14.0.
2019-05-06 00:14:47 +02:00
c38de81594
gnu: r-bayseq: Update to 2.18.0.
...
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.18.0.
2019-05-06 00:14:46 +02:00
4f4bed7de5
gnu: r-qdnaseq: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.20.0.
2019-05-06 00:14:46 +02:00
2317730994
gnu: r-cghcall: Update to 2.46.0.
...
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.46.0.
2019-05-06 00:14:46 +02:00
8efb842f11
gnu: r-cghbase: Update to 1.44.0.
...
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.44.0.
2019-05-06 00:14:46 +02:00
bcb95b7aac
gnu: r-marray: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-marray): Update to 1.62.0.
2019-05-06 00:14:46 +02:00
a61bcb28f7
gnu: r-graph: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-graph): Update to 1.62.0.
2019-05-06 00:14:46 +02:00
588b63c2af
gnu: r-multtest: Update to 2.40.0.
...
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.40.0.
2019-05-06 00:14:45 +02:00
0968a44874
gnu: r-ripseeker: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.24.0.
2019-05-06 00:14:45 +02:00
4c221b3bbf
gnu: r-diffbind: Update to 2.12.0.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.12.0.
[propagated-inputs]: Add r-rhtslib; remove r-zlibbioc.
2019-05-06 00:14:45 +02:00
e02162f7ba
gnu: r-qvalue: Update to 2.16.0.
...
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.16.0.
2019-05-06 00:14:45 +02:00
3e1bc88c1f
gnu: r-geneplotter: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.62.0.
2019-05-06 00:14:45 +02:00
4b53d55e98
gnu: r-regioner: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.0.
2019-05-06 00:14:45 +02:00
43a23a0733
gnu: r-hpar: Update to 1.26.0.
...
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.26.0.
2019-05-06 00:14:44 +02:00
0c53332a27
gnu: r-annotate: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.62.0.
2019-05-06 00:14:44 +02:00
81a1c45df5
gnu: r-biocgenerics: Update to 0.30.0.
...
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.30.0.
2019-05-06 00:14:44 +02:00
3addf736d5
gnu: r-systempiper: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.0.
[propagated-inputs]: Replace r-batchjobs with r-batchtools; add r-yaml.
2019-05-06 00:14:44 +02:00
9bcbca135b
gnu: r-rsamtools: Update to 2.0.0.
...
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.0.
[propagated-inputs]: Add r-rhtslib.
2019-05-06 00:14:44 +02:00
82d9340b0c
gnu: r-impute: Update to 1.58.0.
...
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.58.0.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
2019-05-06 00:14:44 +02:00
2b4ac1d77e
gnu: r-rcas: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.0.
[propagated-inputs]: Add ghc-pandoc.
2019-05-06 00:14:43 +02:00
8322c860f9
gnu: r-methylkit: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.10.0.
[propagated-inputs]: Add r-mgcv.
2019-05-06 00:14:43 +02:00
b173dbe617
gnu: r-annotationhub: Update to 2.16.0.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.16.0.
[propagated-inputs]: Add r-biocfilecache, r-dplyr, and r-rappdirs.
2019-05-06 00:14:43 +02:00
a8abc8dd3a
gnu: r-fastseg: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.30.0.
2019-05-06 00:14:43 +02:00
e699e8e599
gnu: r-keggrest: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.24.0.
2019-05-06 00:14:43 +02:00
c798455d87
gnu: r-gage: Update to 2.34.0.
...
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.34.0.
2019-05-06 00:14:43 +02:00
d4ef1d59cc
gnu: r-genomicfiles: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.20.0.
2019-05-06 00:14:43 +02:00
70a3e4499d
gnu: r-complexheatmap: Update to 2.0.0.
...
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.0.0.
[propagated-inputs]: Add r-clue and r-png.
2019-05-06 00:14:43 +02:00
e2cb23404c
gnu: r-dirichletmultinomial: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.26.0.
2019-05-06 00:14:42 +02:00
0af6efa3c5
gnu: r-ensembldb: Update to 2.8.0.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.8.0.
2019-05-06 00:14:42 +02:00
96f98c5b72
gnu: r-organismdbi: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.26.0.
2019-05-06 00:14:42 +02:00
a98c3b4ae4
gnu: r-biovizbase: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.32.0.
2019-05-06 00:14:42 +02:00
d38fbacad1
gnu: r-ggbio: Update to 1.32.0.
...
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.32.0.
2019-05-06 00:14:42 +02:00
623be1a443
gnu: r-gqtlbase: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.16.0.
2019-05-06 00:14:42 +02:00
ed7de45655
gnu: r-snpstats: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.34.0.
2019-05-06 00:14:42 +02:00
3c5f5b4154
gnu: r-erma: Update to 1.0.0.
...
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.0.0.
2019-05-06 00:14:41 +02:00
89ba9a7226
gnu: r-ldblock: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.0.
2019-05-06 00:14:41 +02:00
a349d57a46
gnu: r-gqtlstats: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.16.0.
2019-05-06 00:14:41 +02:00
105d9e2cb4
gnu: r-gviz: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.28.0.
2019-05-06 00:14:41 +02:00
1b454f9f69
gnu: r-gwascat: Update to 2.16.0.
...
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.0.
[propagated-inputs]: Remove r-annotationhub, r-ggbio, r-ggplot2, r-gqtlstats,
r-graph, r-gviz, r-snpstats, r-summarizedexperiment, and r-variantannotation.
2019-05-06 00:14:41 +02:00
256609eb46
gnu: r-sushi: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.22.0.
2019-05-06 00:14:41 +02:00
7705165882
gnu: r-fithic: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.10.0.
2019-05-06 00:14:40 +02:00
e998a26e1d
gnu: r-hitc: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.28.0.
2019-05-06 00:14:40 +02:00
65925573be
gnu: r-hdf5array: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-rhdf5lib.
2019-05-06 00:14:40 +02:00
d5625b3a9e
gnu: r-rhdf5lib: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.0.
2019-05-06 00:14:40 +02:00
583b4fd6e3
gnu: r-beachmat: Update to 2.0.0.
...
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.0.0.
[inputs]: Remove hdf5 and zlib.
[propagated-inputs]: Rmeove r-hdf5array, r-rcpp, r-rhdf5, and r-rhdf5lib.
2019-05-06 00:14:40 +02:00
029cefdd90
gnu: r-singlecellexperiment: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.6.0.
2019-05-06 00:14:40 +02:00
70d04dc183
gnu: r-scater: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.0.
[propagated-inputs]: Add r-biocneighbors and r-biocsingular; remove r-plyr,
r-reshape2, and r-rhdf5lib.
2019-05-06 00:14:40 +02:00
4540727a21
gnu: r-scran: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.0.
[propagated-inputs]: Add r-bh, r-biocsingular, and r-dqrng; remove r-rhdf5lib.
2019-05-06 00:14:39 +02:00
f2a63d1588
gnu: r-delayedmatrixstats: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.0.
2019-05-06 00:14:39 +02:00
fbf3494972
gnu: Add r-biocfilecache.
...
* gnu/packages/bioconductor.scm (r-biocfilecache): New variable.
2019-05-06 00:14:39 +02:00
fab5f7c8d9
gnu: r-interactivedisplaybase: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.22.0.
2019-05-06 00:14:39 +02:00
975b72fa10
gnu: r-edaseq: Update to 2.18.0.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.18.0.
2019-05-06 00:14:39 +02:00
b765fc4a4c
gnu: r-deseq: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.36.0.
2019-05-06 00:14:39 +02:00
95f3a46630
gnu: r-aroma-light: Update to 3.14.0.
...
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.14.0.
2019-05-06 00:14:39 +02:00
dd03589939
gnu: r-msnid: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.0.
2019-05-06 00:14:38 +02:00
b65c264907
gnu: r-msnbase: Update to 2.10.0.
...
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.10.0.
2019-05-06 00:14:38 +02:00
ee386fcb1a
gnu: r-pcamethods: Update to 1.76.0.
...
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.76.0.
2019-05-06 00:14:38 +02:00
f955afdabf
gnu: r-mzid: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.22.0.
2019-05-06 00:14:38 +02:00
9421e6b610
gnu: r-vsn: Update to 3.52.0.
...
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.52.0.
2019-05-06 00:14:38 +02:00
15f240e317
gnu: r-affy: Update to 1.62.0.
...
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.62.0.
2019-05-06 00:14:38 +02:00
fdbaa5c1e5
gnu: r-affyio: Update to 1.54.0.
...
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.54.0.
2019-05-06 00:14:38 +02:00
5498cc46b3
gnu: r-mzr: Update to 2.18.0.
...
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.18.0.
2019-05-06 00:14:37 +02:00
24aabd8fd9
gnu: r-protgenerics: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.16.0.
2019-05-06 00:14:37 +02:00
10cb9919fc
gnu: r-sva: Update to 3.32.0.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.0.
2019-05-06 00:14:37 +02:00
59bef6eaee
gnu: r-copywriter: Update to 2.16.0.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.16.0.
2019-05-06 00:14:37 +02:00
70c44443c3
gnu: r-chipseq: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.34.0.
2019-05-06 00:14:37 +02:00
dbb4aa4a34
gnu: r-annotationfilter: Update to 1.8.0.
...
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.8.0.
2019-05-06 00:14:37 +02:00
f6ecdafa11
gnu: r-rhdf5: Update to 2.28.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.28.0.
2019-05-06 00:14:37 +02:00
c030eb50c5
gnu: r-tximport: Update to 1.12.0.
...
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.0.
2019-05-06 00:14:36 +02:00
5b65a85949
gnu: r-mutationalpatterns: Update to 1.10.0.
...
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.10.0.
2019-05-06 00:14:36 +02:00
45aeb4eb1d
gnu: r-bamsignals: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.16.0.
2019-05-06 00:14:36 +02:00
23ce7f3b0b
gnu: r-rhtslib: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.1.
2019-05-06 00:14:36 +02:00
c648e672b7
gnu: r-zlibbioc: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.30.0.
2019-05-06 00:14:36 +02:00
3be113b706
gnu: r-motifrg: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.28.0.
2019-05-06 00:14:35 +02:00
a7143246f8
gnu: r-seqlogo: Update to 1.50.0.
...
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.50.0.
2019-05-06 00:14:35 +02:00
6ef47ac82e
gnu: r-genomation: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.16.0.
2019-05-06 00:14:35 +02:00
d726689a70
gnu: r-seqpattern: Update to 1.16.0.
...
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.16.0.
2019-05-06 00:14:35 +02:00
651b62c697
gnu: r-bsgenome: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.52.0.
2019-05-06 00:14:35 +02:00
971df3a784
gnu: r-topgo: Update to 2.36.0.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.36.0.
2019-05-06 00:14:34 +02:00
d31f8d1bd8
gnu: r-genomicfeatures: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.0.
2019-05-06 00:14:34 +02:00
40d97367f0
gnu: r-rtracklayer: Update to 1.44.0.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.0.
2019-05-06 00:14:34 +02:00
6ff6973502
gnu: r-genomicalignments: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.20.0.
2019-05-06 00:14:34 +02:00
8671d1e9d6
gnu: r-summarizedexperiment: Update to 1.14.0.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.0.
2019-05-06 00:14:34 +02:00
14561bb9e7
gnu: r-delayedarray: Update to 0.10.0.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.10.0.
[propagated-inputs]: Add r-matrix.
2019-05-06 00:14:34 +02:00
d2e165496b
gnu: r-biostrings: Update to 2.52.0.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.52.0.
2019-05-06 00:14:33 +02:00
e10b67c797
gnu: r-biocparallel: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.0.
2019-05-06 00:14:33 +02:00
933571ddcd
gnu: r-biomart: Update to 2.40.0.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.0.
2019-05-06 00:14:33 +02:00
a1b9378a8e
gnu: r-annotationdbi: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.46.0.
2019-05-06 00:14:33 +02:00
4aadfcd296
gnu: r-biobase: Update to 2.44.0.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.44.0.
2019-05-06 00:14:33 +02:00
b35bc56a8a
gnu: r-genomicranges: Update to 1.36.0.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.0.
2019-05-06 00:14:33 +02:00
bc0e5bc12e
gnu: r-xvector: Update to 0.24.0.
...
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.24.0.
2019-05-06 00:14:32 +02:00
5fadf39280
gnu: r-limma: Update to 3.40.0.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.40.0.
2019-05-06 00:14:32 +02:00
0d094ad9ab
gnu: r-variantannotation: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.0.
[propagated-inputs]: Add r-rhtslib.
2019-05-06 00:14:32 +02:00
1e3f53a489
gnu: r-edger: Update to 3.26.0.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.0.
2019-05-06 00:14:32 +02:00
6dc05d0a86
gnu: r-genomeinfodb: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.20.0.
2019-05-06 00:14:32 +02:00
38142114b7
gnu: r-iranges: Update to 2.18.0.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.0.
2019-05-06 00:14:32 +02:00
192ddab3e5
gnu: r-s4vectors: Update to 0.22.0.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.0.
2019-05-06 00:14:31 +02:00
8bdf7d55be
gnu: r-bioccheck: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.20.0.
2019-05-06 00:14:31 +02:00
e01b72d225
gnu: r-biocstyle: Update to 2.12.0.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.12.0.
2019-05-06 00:14:31 +02:00
440af6482a
gnu: r-biocviews: Update to 1.52.0.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.0.
2019-05-06 00:14:31 +02:00
ce52cab000
gnu: r-grohmm: Update to 1.18.0.
...
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.18.0.
2019-05-06 00:14:31 +02:00
49f30903f0
gnu: r-shortread: Update to 1.42.0.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.42.0.
2019-05-06 00:14:31 +02:00
fe40f55094
gnu: r-gostats: Update to 2.50.0.
...
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.50.0.
2019-05-06 00:14:30 +02:00
4d88dbe6eb
gnu: r-category: Update to 2.50.0.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.50.0.
2019-05-06 00:14:30 +02:00
08d2a26d47
gnu: r-gseabase: Update to 1.46.0.
...
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.46.0.
2019-05-06 00:14:30 +02:00
aa51a241c5
gnu: r-rbgl: Update to 1.60.0.
...
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.60.0.
[propagated-inputs]: Add r-bh.
2019-05-06 00:14:30 +02:00
7f737246d8
gnu: r-annotationforge: Update to 1.26.0.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.26.0.
2019-05-06 00:14:30 +02:00
0a58282de7
gnu: r-dexseq: Update to 1.30.0.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.30.0.
2019-05-06 00:14:30 +02:00
9a39193d45
gnu: r-deseq2: Update to 1.24.0.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.24.0.
2019-05-06 00:14:30 +02:00
0183163d1e
gnu: r-genefilter: Update to 1.66.0.
...
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.66.0.
2019-05-06 00:14:29 +02:00
295f35dfb9
gnu: r-preprocesscore: Update to 1.46.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.46.0.
2019-05-06 00:14:29 +02:00
52b4703c08
gnu: r-rgraphviz: Update to 2.28.0.
...
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.28.0.
2019-05-06 00:14:29 +02:00
3b13b6d777
gnu: r-units: Update to 0.6-3.
...
* gnu/packages/cran.scm (r-units): Update to 0.6-3.
2019-05-06 00:14:29 +02:00
3961b3b900
gnu: Add r-dqrng.
...
* gnu/packages/cran.scm (r-dqrng): New variable.
2019-05-06 00:14:29 +02:00
b8d6dffbdd
gnu: Add r-sitmo.
...
* gnu/packages/cran.scm (r-sitmo): New variable.
2019-05-06 00:14:29 +02:00
0c8960df13
gnu: Add r-clue.
...
* gnu/packages/cran.scm (r-clue): New variable.
2019-05-06 00:14:29 +02:00
be23c491cb
gnu: Add r-batchtools.
...
* gnu/packages/cran.scm (r-batchtools): New variable.
2019-05-06 00:14:28 +02:00
04bf86ba9f
gnu: Add r-blme.
...
* gnu/packages/cran.scm (r-blme): New variable.
2019-05-06 00:14:28 +02:00
2b9d4f5866
gnu: Add r-scrime.
...
* gnu/packages/cran.scm (r-scrime): New variable.
2019-05-06 00:14:28 +02:00
78735b9f34
gnu: Add r-grimport2.
...
* gnu/packages/cran.scm (r-grimport2): New variable.
2019-05-06 00:14:28 +02:00
8128189976
gnu: Add r-rcpphnsw.
...
* gnu/packages/cran.scm (r-rcpphnsw): New variable.
2019-05-06 00:14:28 +02:00
993912905d
gnu: Add r-biocsingular.
...
* gnu/packages/bioconductor.scm (r-biocsingular): New variable.
2019-05-06 00:14:28 +02:00
72032c9d5f
gnu: Add r-base64url.
...
* gnu/packages/cran.scm (r-base64url): New variable.
2019-05-06 00:14:27 +02:00
ba4c0d69b0
gnu: mesa: Update gallium drivers.
...
* gnu/packages/gl.scm (mesa)[arguments]: Update configure-flags for
aarch64 and armhf for gallium drivers.
2019-05-05 20:34:59 +03:00
dcfa0acd7b
Correct email and license info for Brendan Tildesley.
...
* gnu/packages/audio.scm: Correct email and license info.
* gnu/packages/ebook.scm: Correct email and license info.
* gnu/packages/fonts.scm: Correct email and license info.
* gnu/packages/freedesktop.scm: Correct email and license info.
* gnu/packages/gnome.scm: Correct email and license info.
* gnu/packages/linux.scm: Correct email and license info.
* gnu/packages/lxde.scm: Correct email and license info.
* gnu/packages/python-web.scm: Correct email and license info.
* gnu/packages/python-xyz.scm: Correct email and license info.
* gnu/packages/python.scm: Correct email and license info.
* gnu/packages/video.scm: Correct email and license info.
* gnu/packages/web.scm: Correct email and license info.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 17:16:51 +02:00
996186b64d
gnu: lz4: Update to 1.9.1.
...
* gnu/packages/compression.scm (lz4): Update to 1.9.1.
2019-05-05 15:33:39 +02:00
ee3ce0d71d
gnu: calibre: Update to 3.42.0.
...
* gnu/packages/ebook.scm (calibre): Update to 3.42.0.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
421c5e92f9
gnu: calibre: Shorten long line.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Shorten long line.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
d6dfe8b634
gnu: calibre: Install man pages.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[install-man-pages]:
New phase.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
f3f017dbf0
gnu: calibre: Delete various junk from source.
...
* gnu/packages/ebook.scm (calibre)[source](snippet): Delete various junk from
source.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
62a97dc0fb
gnu: calibre: Remove libxrender as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Remove libxrender.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
68435a7f55
gnu: calibre: Unbundle python2-odfpy.
...
* gnu/packages/ebook.scm (calibre)[snippet]: Remove all of src/odf.
[inputs]: Add python2-odfpy.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
7312a7d073
gnu: calibre: Remove some comments.
...
* gnu/packages/ebook.scm (calibre): There is no unrar in Guix currently, and
pdftohtml is in poppler, so we can remove this comment.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:21 +02:00
eb5f620134
gnu: calibre: Enable tests.
...
* gnu/packages/ebook.scm (calibre): Enable tests.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
cbe399e736
gnu: calibre: Disable sqlite test.
...
* gnu/packages/patches/calibre-remove-test-sqlite.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
4bcd0647b7
gnu: calibre: Disable Qt test.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Disable
Qt test.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
f89f5abada
gnu: calibre: Disable bs4 test.
...
* gnu/packages/patches/calibre-remove-test-bs4.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
6e1ab5fadb
gnu: calibre: Use "linux.py" to install desktop files.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Modify.
[install-mimetypes]: Remove.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
ad74978a95
gnu: Add python-soupsieve, python2-soupsieve.
...
* gnu/packages/python-xyz.scm (python-soupsieve): New variable.
(python2-soupsieve): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
b01cde1ac9
gnu: calibre: Disable tests that require networking.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Modify.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
15871b4087
gnu: calibre: Remove unrar test.
...
* gnu/packages/patches/calibre-remove-test-unrar.patch: New file.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
c187c9d786
gnu: python-regex, python2-regex: Update to 2019.04.14.
...
* gnu/packages/python.scm (python-regex, python2-regex): Update to 2019.04.14.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
adc25b68b1
gnu: calibre: Add python2-html2text as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-html2text.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
7a82ceb7bb
gnu: Add python-html2text, python2-html2text.
...
* gnu/packages/python-web.scm (python-html2text): New variable.
(python2-html2text): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
13068a8ccf
gnu: calibre: Move font unbundling to after check phase.
...
* gnu/packages/ebook.scm (calibre)[snippet]: Modify.
[native-inputs]: Remove font-liberation.
[inputs]: Add font-liberation.
[arguments]<#:phases>[install-font-liberation]: Delete phase.
[unbundle-font-liberation]: New phase.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
4f29902080
gnu: calibre: Add missing dependencies as indicated by tests.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-html5lib,
python2-psutil.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:20 +02:00
b0038957f5
gnu: calibre: Build rapydscript.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Modify.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
d243b41dd0
gnu: calibre: Use system mathjax.
...
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]:
New phase.
[inputs]: Add js-mathjax.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
4e6f8a1442
gnu: calibre: Update to 3.41.3.
...
* gnu/packages/ebook.scm (calibre): Update to 3.41.3.
[inputs]: Replace python2-cssutils by python2-css-parser.
[snippet]: Modify.
* gnu/packages/patches/calibre-use-packaged-feedparser.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-05 14:44:19 +02:00
c8e214e80d
gnu: wgetpaste: Make all dependencies explicit.
...
* gnu/packages/wget.scm (wgetpaste)[arguments]: Replace limited
‘use-inputs’ phase with a ‘wrap-program’ one.
2019-05-05 00:10:44 +02:00
4d3990c9f3
gnu: wgetpaste: Return #t from all phases.
...
* gnu/packages/wget.scm (wgetpaste)[arguments]: Return #t from ‘install’ phase.
2019-05-05 00:10:44 +02:00
fbc2531395
gnu: tor: Remove explicit hardening flags.
...
* gnu/packages/tor.scm (tor)[arguments]: Remove #:configure-flags that
merely confirm the defaults.
2019-05-05 00:10:24 +02:00
0d6cfaa3dd
gnu: nano: Update to 4.2.
...
* gnu/packages/nano.scm (nano): Update to 4.2.
2019-05-04 15:43:22 -04:00
4e933afda4
gnu: python-cffi: Fix tests.
...
Fixes issue #35371 (see: https://bugs.gnu.org/35371 ).
* gnu/packages/libffi.scm (python-cffi)[phases]
{patch-paths-of-dynamically-loaded-libraries}: Add phase.
[home-page]: Update URL.
2019-05-04 13:52:57 -04:00
8aeef53497
gnu: coq-bignums: Update to 8.9.0.
...
* gnu/packages/coq.scm (coq-bignums): Update to 8.9.0.
2019-05-04 19:41:44 +02:00
f5b0d90490
gnu: coq-mathcomp: Update to 1.8.0.
...
* gnu/packages/coq.scm (coq-mathcomp): Update to 1.8.0.
2019-05-04 19:41:35 +02:00
1f1ea9c0cb
gnu: coq-gappa: Update to 1.3.4.
...
* gnu/packages/coq.scm (coq-gappa): Update to 1.3.4.
2019-05-04 19:41:28 +02:00
e03e1b5584
gnu: coq: Update to 8.9.0.
...
* gnu/packages/coq.scm (coq): Update to 8.9.0.
(coq-autosubst): Update to latest commit.
(coq-equations): Update to 1.2-beta2.
2019-05-04 19:41:04 +02:00
a8bb8fccd8
gnu: harfbuzz: Update source hash.
...
The previous tarball was modified in-place; see
<https://github.com/harfbuzz/harfbuzz/issues/1641 >.
* gnu/packages/gtk.scm (harfbuzz)[source](sha256): Update.
2019-05-04 18:01:12 +02:00
57e839a26d
gnu: opus: Update to 1.3.1.
...
* gnu/packages/xiph.scm (opus): Update to 1.3.1.
2019-05-04 16:53:49 +02:00
baff6b5e85
gnu: libdrm: Update to 2.4.98.
...
* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.98.
2019-05-04 16:53:49 +02:00
111adbd338
gnu: libpsl: Update to 0.21.0.
...
* gnu/packages/web.scm (libpsl): Update to 0.21.0.
2019-05-04 16:53:49 +02:00
11bab809e1
gnu: python-cython: Update to 0.29.7.
...
* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.7.
2019-05-04 16:53:49 +02:00
9adae0a017
gnu: pcre2: Update to 10.33.
...
* gnu/packages/pcre.scm (pcre2): Update to 10.33.
2019-05-04 16:53:49 +02:00
569f53e1a8
gnu: imagemagick: Update to 6.9.10-42.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-42.
2019-05-04 16:53:49 +02:00
87d336e20f
gnu: gtk+: Update to 3.24.8.
...
* gnu/packages/gtk.scm (gtk+): Update to 3.24.8.
[source](snippet): Remove.
2019-05-04 16:53:49 +02:00
c9c63edbde
gnu: gstreamer: Update to 1.16.0.
...
* gnu/packages/gstreamer.scm (gstreamer, gst-plugins-base, gst-plugins-bad,
gst-plugins-ugly, python-gst): Update to 1.16.0.
(gst-plugins-good): Likewise.
[source](patches): Remove.
[arguments]: Remove #:make-flags.
(gst-libav): Update to 1.16.0.
[inputs]: Change FFMPEG-3.4 to FFMPEG.
* gnu/packages/patches/gst-plugins-good-libvpx-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2019-05-04 16:53:48 +02:00
46c39e1e47
gnu: orc: Update to 0.4.29.
...
* gnu/packages/gstreamer.scm (orc): Update to 0.4.29.
2019-05-04 16:53:48 +02:00
1ce1ebc303
gnu: mesa: Update to 19.0.3.
...
* gnu/packages/gl.scm (mesa): Update to 19.0.3.
2019-05-04 16:53:48 +02:00
420b013724
gnu: libpng: Don't build 'libpng16.a'.
...
* gnu/packages/image.scm (libpng)[arguments]: Add #:configure-flags.
2019-05-04 16:25:54 +02:00
3784b580ef
gnu: QPDF: Update to 8.4.1.
...
* gnu/packages/pdf.scm (qpdf): Update to 8.4.1.
2019-05-04 16:25:53 +02:00
ae528aaf19
gnu: perl: Update to 5.28.2.
...
* gnu/packages/perl.scm (perl): Update to 5.28.2.
2019-05-04 16:25:53 +02:00
45a3ad2ea6
gnu: nghttp2: Update to 1.38.0.
...
* gnu/packages/web.scm (nghttp2): Update to 1.38.0.
2019-05-04 16:25:53 +02:00
63432c9647
gnu: SQLite: Update to 3.28.0.
...
* gnu/packages/sqlite.scm (sqlite): Update to 3.28.0.
2019-05-04 16:25:53 +02:00
e77412362f
gnu: OpenBLAS: Update to 0.3.6.
...
* gnu/packages/maths.scm (openblas): Update to 0.3.6.
2019-05-04 16:25:53 +02:00
27ed6960be
gnu: icu4c: Update to 64.2.
...
* gnu/packages/icu4c.scm (icu4c): Update to 64.2.
[native-inputs]: Add PYTHON.
2019-05-04 16:25:52 +02:00
3b08c873d8
gnu: fontforge: Update to 20190413.
...
* gnu/packages/fontutils.scm (fontforge): Update to 20190413.
2019-05-04 16:25:52 +02:00
de7dae6e10
gnu: CMake: Update to 3.14.3.
...
* gnu/packages/cmake.scm (cmake-minimal): Update to 3.14.3.
2019-05-04 16:25:52 +02:00
176003dafe
gnu: meson: Update to 0.50.1.
...
* gnu/packages/build-tools.scm (meson): Update to 0.50.1.
2019-05-04 16:25:52 +02:00
a5e9413ce8
gnu: python: Disable failing test.
...
Fixes issue #35556 (see: https://bugs.gnu.org/35556 ).
* gnu/packages/python.scm (python-3.7)[make-flags]: Exclude the test "test_asyncio",
which currently fails.
2019-05-03 23:46:29 -04:00
187f9636f1
gnu: ocaml-menhir: Update to 20181113.
...
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20181113.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-05-03 20:46:22 +02:00
52c3cb2687
gnu: Add python-django-extensions.
...
* gnu/packages/django.scm (python-django-extensions): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-03 17:47:30 +02:00
8d73558d50
gnu: Add python-django-taggit.
...
* gnu/packages/django.scm (python-django-taggit): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-03 17:47:30 +02:00
c8bb86f51c
gnu: tor: Update to 0.4.0.5.
...
* gnu/packages/tor.scm (tor): Update to 0.4.0.5.
2019-05-03 15:22:22 +02:00
02eb70bd21
gnu: Add python-css-parser, python2-css-parser.
...
* gnu/packages/python-web.scm (python-css-parser, python2-css-parser): New
variables.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 13:58:22 +02:00
c2dd07aba5
gnu: web: Change 'l:' prefix to 'license:'.
...
* gnu/packages/web.scm: Change #:prefix l: to #:prefix license:.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 13:58:21 +02:00
3e85909044
Correct email address for ison.
...
* .mailmap, gnu/packages/lxde.scm: Update email address.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2019-05-03 08:45:55 +02:00
d7afe74d60
gnu: r-cluster: Update to 2.0.9.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.9.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
2019-05-03 08:00:54 +02:00
f66f40400c
gnu: r-irkernel: Update to 1.0.1.
...
* gnu/packages/cran.scm (r-irkernel): Update to 1.0.1.
2019-05-03 08:00:54 +02:00
27b4bfbe4b
gnu: r-ouch: Update to 2.14-1.
...
* gnu/packages/cran.scm (r-ouch): Update to 2.14-1.
2019-05-03 08:00:53 +02:00
dea3df2bd1
gnu: r-fs: Update to 1.3.0.
...
* gnu/packages/cran.scm (r-fs): Update to 1.3.0.
2019-05-03 08:00:49 +02:00
8d5edc9cea
gnu: linux-libre: Update to 5.0.11.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.11.
(%linux-libre-hash): Update hash.
2019-05-02 22:50:01 -04:00
c52fb6e11d
gnu: linux-libre@4.19: Update to 4.19.38.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.38.
(%linux-libre-4.19-hash): Update hash.
2019-05-02 22:49:14 -04:00
4dc3f7c7dc
gnu: linux-libre@4.14: Update to 4.14.115.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.115.
(%linux-libre-4.14-hash): Update hash.
2019-05-02 22:48:26 -04:00
e2474df6ee
gnu: linux-libre@4.9: Update to 4.9.172.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.172.
2019-05-02 22:47:46 -04:00
82329a17f4
gnu: pluma: Use older version of gtksourceview.
...
Reported by L p R n d n <guix@lprndn.info>.
Fixes <https://bugs.gnu.org/35535 >.
* gnu/packages/mate.scm (pluma)[inputs]: Replace gtksourceview with
gtksourceview-3.
2019-05-02 23:12:39 +02:00
2f869b0279
gnu: mate-applets: Use older version of gtksourceview.
...
Reported by L p R n d n <guix@lprndn.info>.
* gnu/packages/mate.scm (mate-applets)[inputs]: Replace gtksourceview with
gtksourceview-3.
2019-05-02 23:12:38 +02:00
48f19e60c4
gnu: le-certs: Update hashes.
...
They added the 3 missing '^M' to all pem certs.
* gnu/packages/certs.scm (le-certs)[inputs]: Update the hashes of
isrgrootx1.pem, letsencryptauthorityx3.pem, letsencryptauthorityx4.pem.
2019-05-02 21:40:41 +08:00
746ac457cc
Merge branch 'version-1.0.0'
2019-05-02 15:32:30 +02:00
c457f109be
gnu: php: Update to 7.3.5.
...
* gnu/packages/php.scm (php): Update to 7.3.5.
2019-05-02 14:53:23 +02:00
d5f4d5b683
gnu: emacs-emms: Update to 5.2.
...
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 5.2.
2019-05-02 11:54:39 +02:00
5f83b5153a
gnu: python-duniterpy: Update to 0.53.1.
...
* gnu/packages/finance.scm (python-duniterpy): Update to 0.53.1.
2019-05-02 10:22:36 +02:00
45a37f5b05
gnu: emacs-relint: Update to 1.7.
...
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.7.
2019-05-02 10:14:18 +02:00
d34984b9fe
gnu: emacs-xr: Update to 1.11.
...
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.11.
2019-05-02 10:13:20 +02:00
c2974d1e46
gnu: faudio: Update to 19.05.
...
* gnu/packages/audio.scm (faudio): Update to 19.05.
2019-05-02 08:57:24 +02:00
9bec3ba4ca
gnu: python-flexmock: Update to 0.10.4.
...
* gnu/packages/check.scm (python-flexmock): Update to 0.10.4.
2019-05-02 00:52:33 +02:00
123bba720d
gnu: python-hypothesis: Update to 4.18.3.
...
* gnu/packages/check.scm (python-hypothesis): Update to 4.18.3.
2019-05-02 00:38:53 +02:00
56e95d54d2
gnu: python-pytest: Update to 4.4.1.
...
* gnu/packages/check.scm (python-pytest): Update to 4.4.1.
[arguments]: Enable previously failing tests.
2019-05-02 00:38:53 +02:00
f1e9999b5f
gnu: boost: Update to 1.70.0.
...
* gnu/packages/boost.scm (boost): Update to 1.70.0.
2019-05-02 00:38:53 +02:00
0a404bdb5e
gnu: libuv: Update to 1.28.0.
...
* gnu/packages/libevent.scm (libuv): Update to 1.28.0.
2019-05-02 00:38:53 +02:00
3d8f6577bf
gnu: util-linux: Update to 2.33.2.
...
* gnu/packages/linux.scm (util-linux): Update to 2.33.2.
2019-05-02 00:38:53 +02:00
46d258cbe2
gnu: pixman: Update to 0.38.4.
...
* gnu/packages/xdisorg.scm (pixman): Update to 0.38.4.
2019-05-02 00:38:53 +02:00
f6e25b3358
gnu: python: Update to 3.7.3.
...
* gnu/packages/python.scm (python-3.7): Update to 3.7.3.
2019-05-02 00:38:53 +02:00
1f62621607
gnu: python-more-itertools: Update to 7.0.0.
...
* gnu/packages/python-xyz.scm (python-more-itertools): Update to 7.0.0.
2019-05-02 00:38:53 +02:00
922fbf8a66
gnu: jemalloc: Update to 5.2.0.
...
* gnu/packages/jemalloc.scm (jemalloc): Update to 5.2.0.
2019-05-02 00:38:53 +02:00
2da9b81837
gnu: harfbuzz: Update to 2.4.0.
...
* gnu/packages/gtk.scm (harfbuzz): Update to 2.4.0.
2019-05-02 00:38:52 +02:00
1ec290e27a
gnu: curl: Update to 7.64.1.
...
* gnu/packages/curl.scm (curl): Update to 7.64.1.
2019-05-02 00:38:52 +02:00
8b5b3acab3
gnu: libpng: Remove graft for 1.6.37.
...
* gnu/packages/image.scm (libpng): Update to 1.6.37.
[replacement]: Remove field.
(libpng-1.6.37): Remove variable.
2019-05-02 00:38:52 +02:00
8de1979d7c
gnu: openjpeg: Don't build 'libopenjp2.a'.
...
* gnu/packages/image.scm (openjpeg)[arguments]: Add #:configure-flags.
2019-05-02 00:38:52 +02:00
de1b5e4959
gnu: openjpeg: Incorporate grafted changes.
...
* gnu/packages/image.scm (openjpeg): Update to 2.3.1.
[replacement]: Remove.
[source]: Change to GIT-FETCH.
2019-05-02 00:38:52 +02:00
50943b4878
gnu: lcms: Incorporate grafted changes.
...
* gnu/packages/ghostscript.scm (lcms)[replacement]: Remove.
[source](patches): New field.
(lcms/fixed): Remove variable.
2019-05-02 00:38:52 +02:00
c078f1b08b
gnu: texlive-bin: Adapt to Poppler 0.75.
...
This is a follow-up to commit 2eb92ce85f
2019-05-02 00:38:52 +02:00
3b458d5462
Merge branch 'master' into core-updates
2019-05-01 23:11:41 +02:00
14da3daafc
gnu: termite: Update to 15.
...
* gnu/packages/terminals.scm (termite): Update to 15.
2019-05-01 22:15:02 +02:00
03c59a2525
gnu: vte-ng: Update to 0.56.2.a.
...
* gnu/packages/gnome.scm (vte-ng): Update to 0.56.2.a.
[native-inputs]: Add GCC-7.
[arguments]: Add GCC7 workaround.
2019-05-01 22:15:02 +02:00
a0d44bb09f
gnu: spice: Update to 0.14.2 [fixes CVE-2019-3813].
...
* gnu/packages/spice.scm (spice): Update to 0.14.2.
2019-05-01 22:15:01 +02:00
a550da6247
gnu: spice-protocol: Update to 0.14.0.
...
* gnu/packages/spice.scm (spice-protocol): Update to 0.14.0.
(spice-protocol-0.12): New public variable.
(spice-gtk)[propagated-inputs]: Change SPICE-PROTOCOL to SPICE-PROTOCOL-0.12.
2019-05-01 22:15:01 +02:00
15ada26abb
gnu: signify: Update to 25.
...
* gnu/packages/crypto.scm (signify): Update to 25.
2019-05-01 22:15:01 +02:00
a5006ede7f
gnu: signify: Don't use unstable tarball.
...
* gnu/packages/crypto.scm (signify)[source]: Change to GIT-FETCH.
2019-05-01 22:15:01 +02:00
f99418e3f3
gnu: ungoogled-chromium: Update to 74.0.3729.131-0.9e33022 [fixes CVE-2019-5824].
...
* gnu/packages/chromium.scm (%chromium-version): Update to 74.0.3729.131.
(ungoogled-chromium-source): Update Chromium hash.
2019-05-01 22:15:01 +02:00
ca86b0bae3
gnu: ungoogled-chromium: Unbundle openjpeg again.
...
This is a follow-up to commit 40594fdcb9e360d68e5444771b5467ba5bbbfcf2.
* gnu/packages/chromium.scm (%preserved-third-party-files): Remove
'third_party/pdfium/third_party/libopenjpeg20'.
(ungoogled-chromium)[arguments]: Fix typo in #:configure-flags.
2019-05-01 22:15:01 +02:00
bd9d5dbb86
gnu: php: Disable failing tests on armhf.
...
* gnu/packages/php.scm (php)[arguments]: Disable two failing tests on
armhf.
2019-05-01 21:13:34 +02:00
17acc215bf
gnu: guix: Update to 326dcbf.
2019-05-01 17:29:02 +02:00
326dcbf1b3
gnu: guix: Update to 1.0.0.
2019-05-01 14:11:34 +02:00
ae66feeee0
gnu: r-irkernel: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-irkernel): Update to 1.0.0.
2019-05-01 11:13:38 +02:00
944d4c483a
gnu: r-officer: Update to 0.3.4.
...
* gnu/packages/cran.scm (r-officer): Update to 0.3.4.
2019-05-01 10:10:04 +02:00
0b5b9d69a8
gnu: r-lmtest: Update to 0.9-37.
...
* gnu/packages/cran.scm (r-lmtest): Update to 0.9-37.
2019-05-01 10:09:52 +02:00
8bc8cea987
gnu: r-shinyfiles: Update to 0.7.3.
...
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.7.3.
2019-05-01 10:09:10 +02:00
af74e4350f
gnu: ungoogled-chromium: Update to 74.0.3729.108-0.9e33022.
...
* gnu/packages/chromium.scm (%preserved-third-party-files): Add four new
directories, delete three obsolete.
(%chromium-version, %ungoogled-revision, %debian-revision): Update for 74.
(ungoogled-chromium-source): Update hashes. Ignore Debians GCC6 patches.
(ungoogled-chromium)[arguments]: Add "use_system_openjpeg" to #:configure-flags.
2019-05-01 01:31:31 +02:00
947134492e
gnu: Remove greenisland.
...
* gnu/packages/display-managers.scm (greenisland): Remove variable.
2019-05-01 01:31:31 +02:00
4ee55938de
gnu: u-boot-tools: Only run full test suite on x86_64.
...
* gnu/packages/bootloaders (u-boot-tools)[arguments]<#:phases>[check]:
Modify phase.
[check-x86]: New phase.
[patch]: New phase.
2019-04-30 13:58:37 -07:00
8d2d68a5fb
gnu: ocaml-migrate-parsetree: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree)[source]: Add FILE-NAME.
2019-04-30 21:07:13 +02:00
b7a4cb5206
gnu: ocaml-opam-file-format: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-opam-file-format)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
ad09f3b024
gnu: sbcl-cl-syntax: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-cl-syntax)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
2af4698016
gnu: emacs-dired-sidebar: Name checkout.
...
* gnu/packages/emacs-xyz.scm (emacs-dired-sidebar)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
0abf2d91cf
gnu: sbcl-rfc2388: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-rfc2388)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
7026f6b27e
gnu: ocaml-ppx-typerep-conv: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
3a75925e73
gnu: ocaml-ppx-hash: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-ppx-hash)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
4a6de00217
gnu: ocaml-ppx-enumerate: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-ppx-enumerate)[source]: Add FILE-NAME.
2019-04-30 21:07:12 +02:00
fbd08d42a6
gnu: ocaml-core: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-core)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
5924f621bb
gnu: sbcl-trivial-backtrace: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-trivial-backtrace)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
a97fc9cd8e
gnu: sbcl-myway: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-myway)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
8f4b57000d
gnu: emacs-helm-pass: Name checkout.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-pass)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
2ba3dc0bdf
gnu: emacs-zotxt: Name checkout.
...
* gnu/packages/emacs-xyz.scm (emacs-zotxt)[source]: Add FILE-NAME.
2019-04-30 21:07:11 +02:00
6f5be83cd7
gnu: u-boot-tools: Only run full test suite on x86_64.
...
* gnu/packages/bootloaders (u-boot-tools)[arguments]<#:phases>[check]:
Modify phase.
[check-x86]: New phase.
[patch]: New phase.
2019-04-30 19:49:16 +02:00
094aaa1a1e
gnu: gexiv2: Skip failing test on 32-bit platforms.
...
* gnu/packages/gnome.scm (gexiv2)[arguments]: New field.
2019-04-30 18:29:10 +02:00
9b241d4ce2
gnu: python-nose-timer: Update to 0.7.5.
...
* gnu/packages/check.scm (python-nose-timer): Update to 0.7.5.
2019-04-30 17:11:52 +02:00
e976e199c4
gnu: sbcl-cl+ssl: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-cl+ssl)[source]: Add FILE-NAME.
2019-04-30 17:11:36 +02:00
e76a972bde
gnu: ghc-esqueleto: Name checkout.
...
* gnu/packages/haskell.scm (ghc-esqueleto)[source]: Add FILE-NAME.
2019-04-30 17:05:22 +02:00
9e6cce4440
gnu: ocaml-ppx-tools: Name checkout.
...
* gnu/packages/ocaml.scm (ocaml-ppx-tools)[source]: Add FILE-NAME.
2019-04-30 17:04:13 +02:00
45ea12f31e
gnu: sbcl-cl-base64: Name checkout.
...
* gnu/packages/lisp.scm (sbcl-cl-base64)[source]: Add FILE-NAME.
2019-04-30 17:03:08 +02:00
4fdad3edc3
gnu: eid-mw: Name checkout.
...
* gnu/packages/security-token.scm (eid-mw)[source]:
Add FILE-NAME.
2019-04-30 17:02:38 +02:00
e4b2866cd0
gnu: libplist: Run tests sequentially.
...
Fixes <https://bugs.gnu.org/35501 >.
Reported by Brendan Tildesley <mail@brendan.scot>.
* gnu/packages/libusb.scm (libplist)[arguments]: New field.
2019-04-30 16:47:29 +02:00
5a3d3d6a3b
gnu: Add i3lock.
...
* gnu/packages/wm.scm (i3lock): New public variable.
(cherry picked from commit b6afc35051
2019-04-30 15:09:49 +02:00
378b8a6446
gnu: youtube-dl: Update to 2019.04.30.
...
* gnu/packages/video.scm (youtube-dl): Update to 2019.04.30.
2019-04-30 14:30:18 +02:00
eea094ccdc
gnu: ruby-rest-client: Fix lost ,s.
...
* gnu/packages/ruby.scm (ruby-rest-client)[native-inputs]:
Move unquotes to their operands.
2019-04-30 13:03:56 +02:00
b77c8ddbe1
gnu: maven: Update to 3.6.1.
...
* gnu/packages/maven.scm (maven-artifact): Update to 3.6.1.
2019-04-30 12:41:19 +02:00
6f737ae68f
gnu: java-plexus-archiver: Update to 4.1.0.
...
* gnu/packages/java.scm (java-plexus-archiver): Update to 4.1.0.
2019-04-30 12:41:11 +02:00
0cd8efcc8c
gnu: java-plexus-utils: Update to 3.2.0.
...
* gnu/packages/java.scm (java-plexus-utils): Update to 3.2.0.
2019-04-30 12:41:06 +02:00
45fb7b404d
gnu: Rename some games to match upstream project name.
...
* gnu/packages/games.scm (armagetronad):
(cataclysm-dda):
(abbaye):
(wesnoth):
(wesnoth-server):
(starfighter):
(kiki):
(fillets-ng):
(crawl):
(crawl-tiles):
(tome4):
(btanks):
(battle-tanks):
(edgar): Use these as the package definition.
(armagetron-advanced):
(cataclysm-dark-days-ahead):
(l-abbaye-des-morts):
(the-battle-for-wesnoth):
(the-battle-for-wesnoth-server):
(project-starfighter):
(kiki-the-nano-bot):
(fish-fillets-ng):
(dungeon-crawl-stone-soup):
(dungeon-crawl-stone-soup-tiles):
(tales-of-maj-eyal):
(the-legend-of-edgar): Turn these into obsolete aliases.
This reverts renames made by the following commits:
f95e33a7adb1aee9fce2f6a21d61de24a67aef2a36a0b5b48c8b6e2bc15f6639295f2f184f5c8db1ecdb1348ad375cb94130c91ed484d0973bd8a62cdf42e0f9c9
2019-04-30 10:42:00 +02:00
6215132155
gnu: ocaml-camomile: Install data in the store.
...
* gnu/packages/ocaml.scm (ocaml-camomile)[arguments]: Fix configuration
to look for and install data in the store.
2019-04-30 10:28:21 +02:00
f420d639df
gnu: i3-wm: Use absolute paths in session files.
...
* gnu/packages/wm.scm (i3-wm)[arguments]: Add a phase to patch the
session '.desktop' files to use the absolute paths of the 'i3' and
'i3-with-shmlog' binaries.
2019-04-29 23:04:35 -04:00
9aa470e912
gnu: awesome: Use absolute paths in session file.
...
* gnu/packages/wm.scm (awesome)[arguments]: Add a phase to patch the
session '.desktop' file to use the absolute path of the 'awesome'
binary.
2019-04-29 23:04:35 -04:00
5aafccebbe
gnu: gdm: Avoid selecting the placeholder session.
...
This fixes <https://bugs.gnu.org/35484 >.
* gnu/packages/gnome.scm (gdm)[arguments]: Modify the pre-configure phase to
patch GDM to only select the placeholder session if there are no others.
2019-04-29 23:04:27 -04:00
aa7cdc57dc
gnu: i3-wm: Use absolute paths in session files.
...
* gnu/packages/wm.scm (i3-wm)[arguments]: Add a phase to patch the
session '.desktop' files to use the absolute paths of the 'i3' and
'i3-with-shmlog' binaries.
2019-04-29 22:36:27 -04:00
4ec42524dd
gnu: awesome: Use absolute paths in session file.
...
* gnu/packages/wm.scm (awesome)[arguments]: Add a phase to patch the
session '.desktop' file to use the absolute path of the 'awesome'
binary.
2019-04-29 20:54:43 -04:00
e8c6e771c1
gnu: gdm: Avoid selecting the placeholder session.
...
This fixes <https://bugs.gnu.org/35484 >.
* gnu/packages/gnome.scm (gdm)[arguments]: Modify the pre-configure phase to
patch GDM to only select the placeholder session if there are no others.
2019-04-29 20:54:43 -04:00
649220adae
gnu: Rename some games to match upstream project name.
...
* gnu/packages/games.scm (armagetronad):
(cataclysm-dda):
(abbaye):
(wesnoth):
(wesnoth-server):
(starfighter):
(kiki):
(fillets-ng):
(crawl):
(crawl-tiles):
(tome4):
(btanks):
(battle-tanks):
(edgar): Use these as the package definition.
(armagetron-advanced):
(cataclysm-dark-days-ahead):
(l-abbaye-des-morts):
(the-battle-for-wesnoth):
(the-battle-for-wesnoth-server):
(project-starfighter):
(kiki-the-nano-bot):
(fish-fillets-ng):
(dungeon-crawl-stone-soup):
(dungeon-crawl-stone-soup-tiles):
(tales-of-maj-eyal):
(the-legend-of-edgar): Turn these into obsolete aliases.
This reverts renames made by the following commits:
f95e33a7adb1aee9fce2f6a21d61de24a67aef2a36a0b5b48c8b6e2bc15f6639295f2f184f5c8db1ecdb1348ad375cb94130c91ed484d0973bd8a62cdf42e0f9c9
2019-04-30 02:02:39 +02:00
6f7f8543c5
gnu: r-rcpparmadillo: Update to 0.9.400.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.400.2.0.
2019-04-30 00:33:55 +02:00
8b96b86065
gnu: r-repr: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-repr): Update to 1.0.0.
[propagated-inputs]: Add r-pillar.
2019-04-30 00:33:55 +02:00
5fce90135c
gnu: r-ipred: Update to 0.9-9.
...
* gnu/packages/cran.scm (r-ipred): Update to 0.9-9.
2019-04-30 00:33:55 +02:00
b6afc35051
gnu: Add i3lock.
...
* gnu/packages/wm.scm (i3lock): New public variable.
2019-04-29 20:10:43 +02:00
05e1534ee8
gnu: kodi: Update to 18.2.
...
* gnu/packages/kodi.scm (kodi): Update to 18.2.
* gnu/packages/patches/kodi-set-libcurl-ssl-parameters.patch: Adjust for
upstream changes.
2019-04-29 20:10:43 +02:00
06c86f166d
gnu: msmtp: Update to 1.8.4.
...
* gnu/packages/mail.scm (msmtp): Update to 1.8.4.
2019-04-29 20:10:43 +02:00
b339f14cb2
gnu: elogind: Update to 241.3.
...
* gnu/packages/freedesktop.scm (elogind): Update to 241.3.
2019-04-29 20:10:42 +02:00
2e652add1f
gnu: ftgl: Don't build libftgl.a.
...
* gnu/packages/gl.scm (ftgl)[arguments]: Add "--disable-static" to #:configure-flags.
2019-04-29 20:10:42 +02:00
a1570c89fe
gnu: qemu: Build verbosely.
...
* gnu/packages/virtualization.scm (qemu)[arguments]: Remove phase
'make-gtester-verbose' in favor of #:make-flags.
2019-04-29 20:10:42 +02:00
4267481a4e
gnu: Remove scmutils.
...
Fixes <https://bugs.gnu.org/34203 >.
* gnu/packages/scheme.scm (scmutils): Remove variable.
2019-04-29 17:20:44 +02:00
373a2a0797
gnu: ocaml-yojson: Update to 1.7.0.
...
* gnu/packages/ocaml.scm (ocaml-yojson): Update to 1.7.0.
(ocaml-merlin): Use jbuild to prevent a build failure due to a
deprecation warning.
2019-04-29 15:44:14 +02:00
fdd9ab3721
gnu: Add missing module in games.scm.
2019-04-29 15:08:59 +02:00
1abe2e2a29
gnu: Add missing modules in games.scm.
2019-04-29 14:56:32 +02:00
a3d4a631fe
gnu: Add hedgewars.
...
* gnu/packages/games.scm (hedgewars): New variable.
2019-04-29 14:37:58 +02:00
e8a0696d56
gnu: Add jumpnbump.
...
* gnu/packages/games.scm (jumpnbump): New variable.
2019-04-29 14:37:01 +02:00
1a8984536f
gnu: Add sdl2-net.
...
* gnu/packages/sdl.scm (sdl2-net): New variable.
2019-04-29 14:37:01 +02:00
6b99afeef8
gnu: u-boot: Update to 2019.04.
...
* gnu/packages/bootloaders.scm (u-boot): Update to 2019.04.
[source]: Add patch.
(u-boot-novena): Update dynamic patch to handle config key rename.
(u-boot-am335x-evm): New variable.
(u-boot-am335x-boneblack): Build with modified am335x-evm config.
(u-boot-novena): Fix typo in description.
* gnu/bootloader/u-boot.scm (u-boot-beaglebone-black-bootloader): Use
u-boot-am335x-boneblack.
* gnu/packages/patches/u-boot-fix-mkimage-header-verification.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-29 12:35:04 +02:00
4c89dc354e
gnu: font-public-sans: Adjust synopsis and description.
...
* gnu/packages/fonts.scm (font-public-sans)[synopsis, description]:
Adjust.
2019-04-29 09:53:06 +02:00
245aa0e344
gnu: Add font-public-sans.
...
* gnu/packages/fonts.scm (font-public-sans): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-04-29 09:51:41 +02:00
c31bec88a8
gnu: diffoscope: Update to 114.
...
* gnu/packages/package-management (diffoscope): Update to 114.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-04-29 09:33:55 +02:00
fdb513a704
gnu: Fix missing bison package in (gnu packages algebra).
...
This fixes a regression introduced in
6d3896b9fc
2019-04-28 23:58:13 +01:00
81aa6c721b
gnu: direnv: Change to the go-build-system.
...
The go-build-system is slightly more appropriate, and switching resolves an
issue with combining the 'unpack phase from the gnu-build-system, and the
'setup-go-environment from the go-build-system. With both of those phases
creating a directory, the first-subdirectory call at the end of the 'unpack
phase can return different values depending on the filesystem ordering.
* gnu/packages/shellutils.scm (direnv)[source]: Use the git repository, as
this works better with the go-build-system.
[build-system]: Change to the go-build-system.
[arguments]: Adjust for the go-build-system.
[native-inputs]: Remove go.
2019-04-28 23:13:31 +01:00
e0f3a4feb5
gnu: Fix typo.
...
* gnu/packages/algebra.scm (giac-xcas): Fix typo.
2019-04-28 22:16:03 +02:00
7fc0e3dbbb
gnu: giac-xcas: Rename to "giac" to match upstream name.
...
* gnu/packages/algebra.scm (giac): New variable.
(giac-xcas): Deprecate.
2019-04-28 21:41:57 +02:00
6d3896b9fc
gnu: giac-xcas: Add inputs.
...
* gnu/packages/algebra.scm (giac-xcas)[inputs]: Add glpk, libsamplerate, bison
and flex.
2019-04-28 21:35:39 +02:00
9f73ac242c
gnu: giac-xcas: Fix documentation.
...
* gnu/packages/algebra.scm (giac-xcas): Use a single output. Fix licensing
issues in documentation.
Xcas expects documentation to be located at a fixed location, not compatible
with a "doc" output.
2019-04-28 21:35:37 +02:00
0e09c099cb
gnu: linux-libre: Update to 5.0.10.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.10.
(%linux-libre-hash): Update hash.
2019-04-28 13:35:43 -04:00
e9ef345508
gnu: linux-libre@4.19: Update to 4.19.37.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.37.
(%linux-libre-4.19-hash): Update hash.
2019-04-28 13:34:57 -04:00
4943ddf878
gnu: linux-libre@4.14: Update to 4.14.114.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.114.
(%linux-libre-4.14-hash): Update hash.
2019-04-28 13:34:06 -04:00
a7dad69a32
gnu: linux-libre@4.9: Update to 4.9.171.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.171.
2019-04-28 13:33:36 -04:00
4987e2b3b1
gnu: linux-libre@4.4: Update to 4.4.179.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.179.
2019-04-28 13:32:54 -04:00
bf949323b9
gnu: Add cloud-utils.
...
* gnu/packages/admin.scm (cloud-utils): New variable.
2019-04-28 17:37:17 +01:00
6b1c7ac8ed
gnu: hypre: Unconditionally return #T from build phases.
...
* gnu/packages/maths.scm (hypre)[arguments]: Use INVOKE and unconditionally
return #T from build phases.
2019-04-28 16:05:57 +02:00
9cd82b1c9d
gnu: jacal: Unconditionally return #T from configure phase.
...
* gnu/packages/maths.scm (jacal)[arguments]: Use INVOKE in configure phase.
2019-04-28 16:05:57 +02:00
32d5360f43
gnu: z3: Unconditionally return #T from build phases.
...
* gnu/packages/maths.scm (z3)[arguments]: Use INVOKE in build phases.
2019-04-28 16:05:56 +02:00
cb6f44d4e4
gnu: atlas: Always return #T from build phases.
...
* gnu/packages/maths.scm (atlas)[arguments]: Always return #T from build
phases; use INVOKE.
2019-04-28 16:05:56 +02:00
1ec1782106
gnu: make-blis: Always return #T from configure phase.
...
* gnu/packages/maths.scm (make-blis)[arguments]: Use INVOKE.
2019-04-28 16:05:56 +02:00
7055407770
gnu: kdevplatform: Use INVOKE.
...
* gnu/packages/kde.scm (kdevplatform)[arguments]: Use INVOKE and return #T
unconditionally.
2019-04-28 16:05:53 +02:00
7d62fa206b
Merge branch 'staging'
2019-04-28 14:45:35 +02:00
c5db31d414
gnu: gnome-shell: Add gdk-pixbuf+svg to inputs.
...
* gnu/packages/gnome.scm (gnome-shell)[inputs]: Add gdk-pixbuf+svg.
2019-04-27 22:57:03 +02:00
3153ca9d5f
gnu: r-rhtslib: Fix build.
...
* gnu/packages/bioinformatics.scm (r-rhtslib)[arguments]: Add
"--no-staged-install" to configure flags.
2019-04-27 22:45:02 +02:00
fc3ebc3023
gnu: r-ggbio: Fix build.
...
* gnu/packages/bioinformatics.scm (r-ggbio)[arguments]: Add build phase to
patch out typo.
2019-04-27 20:45:21 +02:00
d22d790409
gnu: r-sjplot: Update to 2.6.3.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.6.3.
[propagated-inputs]: Add r-bayestestr, r-insight, and r-performance.
2019-04-27 20:45:20 +02:00
711a2f0611
gnu: Add r-performance.
...
* gnu/packages/cran.scm (r-performance): New variable.
2019-04-27 20:45:20 +02:00
c4568c5c64
gnu: Add r-bayestestr.
...
* gnu/packages/cran.scm (r-bayestestr): New variable.
2019-04-27 20:45:20 +02:00
61e41d5132
gnu: guix: Update to 0c329bf.
...
* gnu/packages/package-management.scm (guix): Update to 0c329bf
2019-04-27 19:31:50 +02:00
e821a6406a
gnu: ocaml-qtest: Update to 2.9.
...
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.9.
[source]: Use git-fetch.
[build-system]: Use dune-build-system.
2019-04-27 19:03:43 +02:00
bcc718be03
gnu: ocaml-ezjsonm: Update to 1.1.0.
...
* gnu/packages/ocaml.scm (ocaml-ezjsonm): Update to 1.1.0.
2019-04-27 19:03:28 +02:00
58c3118f59
gnu: ocaml-re: Update to 1.9.0.
...
* gnu/packages/ocaml.scm (ocaml-re): Update to 1.9.0.
(ocaml-uri): Fix build.
2019-04-27 19:03:25 +02:00
e58d05c32e
gnu: ocaml-csv: Update to 2.2.
...
* gnu/packages/ocaml.scm (ocaml-csv): Update to 2.2.
[source]: Use git-fetch.
[build-system]: Use dune-build-system.
2019-04-27 19:03:21 +02:00
f9caa17b63
gnu: ocaml-spawn: Update to 0.13.0.
...
* gnu/packages/ocaml.scm (ocaml-spawn): Update to 0.13.0.
2019-04-27 19:03:14 +02:00
ef1f1ca742
gnu: bubblewrap: Fix Texinfo markup in description.
...
Fixes a regression introduced in
7ecd1761a2
2019-04-27 15:41:36 +02:00
bdb372a647
gnu: gajim: Update to 1.1.3.
...
* gnu/packages/messaging.scm (gajim): Update to 1.1.3.
2019-04-27 12:07:50 +02:00
bf98373fcd
gnu: python-nbxmpp: Update to 0.6.10.
...
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.10.
2019-04-27 12:07:50 +02:00
ea9d634c7e
gnu: r-quadprog: Update to 1.5-6.
...
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-6.
2019-04-27 12:03:13 +02:00
bea8205936
gnu: r-caret: Update to 6.0-84.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-84.
2019-04-27 12:03:13 +02:00
0d32caeeed
gnu: r-fpc: Update to 2.1-11.2.
...
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.2.
2019-04-27 12:03:13 +02:00
9fbbe2623f
gnu: r-rngtools: Update to 1.3.1.1.
...
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.1.
2019-04-27 12:03:13 +02:00
a563e75ea4
gnu: r-mass: Update to 7.3-51.4.
...
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.4.
2019-04-27 12:03:13 +02:00
aa97fbfa95
gnu: r-boot: Update to 1.3-22.
...
* gnu/packages/statistics.scm (r-boot): Update to 1.3-22.
2019-04-27 12:03:13 +02:00
071390aa09
gnu: r-sf: Update to 0.7-4.
...
* gnu/packages/cran.scm (r-sf): Update to 0.7-4.
2019-04-27 12:03:13 +02:00
1bbfca18c5
gnu: r-classint: Update to 0.3-3.
...
* gnu/packages/cran.scm (r-classint): Update to 0.3-3.
[propagated-inputs]: Add r-kernsmooth.
2019-04-27 12:03:13 +02:00
7b18fac45b
gnu: r-survey: Update to 3.36.
...
* gnu/packages/cran.scm (r-survey): Update to 3.36.
[propagated-inputs]: Add r-mitools.
2019-04-27 12:03:13 +02:00
779174e4bb
gnu: r-ordinal: Update to 2019.4-25.
...
* gnu/packages/cran.scm (r-ordinal): Update to 2019.4-25.
2019-04-27 12:03:13 +02:00
9c4f118bf7
gnu: Add r-mitools.
...
* gnu/packages/cran.scm (r-mitools): New variable.
2019-04-27 12:03:10 +02:00
747c8f2a20
gnu: mozjs-38: Fix URI.
...
* gnu/packages/gnuzilla.scm (mozjs-38): Fix URI.
2019-04-27 11:59:49 +02:00
816014d39d
gnu: wine-staging: Update to 4.7.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.7.
* gnu/packages/wine.scm (wine-staging): Update to 4.7.
2019-04-27 11:33:23 +02:00
b05290380f
gnu: ocaml-ppxlib: Update to 0.6.0.
...
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.6.0.
(dune): Update to 1.9.1.
2019-04-26 23:57:00 +02:00
cf338cc305
gnu: ocaml-migrate-parsetree: Add upstream-name.
...
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree)[properties]: New
field.
2019-04-26 23:35:24 +02:00
b7ebcb043c
gnu: ocaml-ppx-expect: Update to 0.12.0.
...
* gnu/packages/ocaml.scm (ocaml-ppx-inline-test): Update to 0.12.0.
(ocaml-ppx-expect): Update to 0.12.0.
2019-04-26 23:35:19 +02:00
ee33e415e7
gnu: ocaml-frontc: Add upstream-name.
...
* gnu/packages/ocaml.scm (ocaml-frontc)[properties]: New field.
2019-04-26 23:35:17 +02:00
d4857001a1
gnu: ocaml-ppx-tools: Add upstream-name.
...
* gnu/packages/ocaml.scm (ocaml-ppx-tools)[properties]: New field.
2019-04-26 23:35:15 +02:00
f08b235dab
gnu: ocaml-lwt-log: Add upstream-name.
...
* gnu/packages/ocaml.scm (ocaml-lwt-log)[properties]: New field.
2019-04-26 23:35:13 +02:00
c949a4eb1f
gnu: ocaml-ppx-tools-versioned: Add upstream-name.
...
* gnu/packages/ocaml.scm (ocaml-ppx-tools-versioned)[properties]: New
field.
2019-04-26 23:35:11 +02:00
d9faae6254
gnu: ocaml-compiler-libs: Add upstream name.
...
* gnu/packages/ocaml.scm (ocaml-compiler-libs)[properties]: New field.
2019-04-26 23:35:08 +02:00
1e5937c8c0
gnu: ocaml-ppx-derivers: Update to 1.2.1.
...
* gnu/packages/ocaml.scm (ocaml-ppx-derivers): Update to 1.2.1.
2019-04-26 23:35:03 +02:00
1e8439de27
gnu: ocaml-pcre: Update to 7.4.1.
...
* gnu/packages/ocaml.scm (ocaml-pcre): Update to 7.4.1.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
2019-04-26 23:34:59 +02:00
acb98ad956
gnu: ocaml-stringext: Update to 1.5.0.
...
* gnu/packages/ocaml.scm (ocaml-stringext): Update to 1.5.0.
[source]: Use git-fetch.
[build-system]: Use dune-build-system.
2019-04-26 23:34:54 +02:00
09cd92a983
gnu: ocaml-zarith: Update to 1.7.
...
* gnu/packages/ocaml.scm (ocaml-zarith): Update to 1.7.
[source]: Use git-fetch.
2019-04-26 23:34:41 +02:00
eddfd11d70
gnu: ocaml-topkg: Update to 1.0.0.
...
* gnu/packages/ocaml.scm (ocaml-topkg): Update to 1.0.0.
2019-04-26 23:34:31 +02:00
853af25ecd
gnu: ocaml-mtime: Update to 1.1.0.
...
* gnu/packages/ocaml.scm (ocaml-mtime): Update to 1.1.0.
2019-04-26 23:34:26 +02:00
3f59ecfcb5
gnu: ocaml-qcheck: Update to 0.9.
...
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.9.
2019-04-26 23:34:10 +02:00
152cbc3ca5
gnu: r-with-tests: Update to 3.6.0.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 3.6.0.
[arguments]: Adjust "build-reproducibly" phase.
[native-inputs]: Add a texlive-union consisting of texlive-fonts-amsfonts,
texlive-fonts-ec, texlive-latex-amsfonts, texlive-latex-base,
texlive-latex-fancyvrb, texlive-latex-graphics, texlive-latex-hyperref,
texlive-latex-oberdiek, texlive-latex-tools, texlive-latex-upquote, and
texlive-latex-url.
2019-04-26 21:00:41 +02:00
7f55904558
gnu: Add umi-tools.
...
* gnu/packages/bioinformatics.scm (umi-tools): New variable.
2019-04-26 21:00:37 +02:00
8caa458953
gnu: gdm: Install a placeholder desktop entry.
...
This fixes <https://bugs.gnu.org/35068 >.
* gnu/packages/gnome.scm (gdm)[arguments]: Add a phase that installs a
placeholder desktop entry file.
Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-26 13:57:39 -04:00
8597aecb84
gnu: MPD: Update to 0.21.8.
...
* gnu/packages/mpd.scm (mpd): Update to 0.21.8.
2019-04-26 13:36:59 -04:00
936a4f4371
gnu: mame: Update to 0.209.
...
* gnu/packages/emulators.scm (mame): Update to 0.209.
2019-04-26 18:54:16 +02:00
273ba2552b
gnu: ocaml-integers: Update to 0.3.0.
...
* gnu/packages/ocaml.scm (ocaml-integers): Update to 0.3.0.
2019-04-26 18:29:02 +02:00
12c3f62ab2
gnu: ocaml-easy-format: Update to 1.3.1.
...
* gnu/packages/ocaml.scm (ocaml-easy-format): Update to 1.3.1.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
2019-04-26 18:28:58 +02:00
7e49538483
gnu: ocaml-fpath: Update to 0.7.2.
...
* gnu/packages/ocaml.scm (ocaml-fpath): Update to 0.7.2.
2019-04-26 18:28:54 +02:00
b858c5ac39
gnu: ocaml-ssl: Update to 0.5.7.
...
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.7.
2019-04-26 18:28:49 +02:00
44b8507d5e
gnu: ocaml-octavius: Update to 1.2.1.
...
* gnu/packages/ocaml.scm (ocaml-octavius): Update to 1.2.1.
2019-04-26 18:28:46 +02:00
22cd6a1d4f
gnu: ocaml-result: Update to 1.3.
...
* gnu/packages/ocaml.scm (ocaml-result): Update to 1.3.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
2019-04-26 18:28:42 +02:00
5cb40adaa2
gnu: ocaml-utop: Update to 2.3.0.
...
* gnu/packages/ocaml.scm (ocaml-utop): Update to 2.3.0.
2019-04-26 18:28:25 +02:00
a9a0790376
gnu: xfdesktop: Stick a Guix logo in the background image.
...
* gnu/packages/xfce.scm (xfdesktop)[source](modules, snippet): New
fields.
[arguments]: New field.
[native-inputs]: Add INKSCAPE and IMAGEMAGICK.
2019-04-26 18:23:56 +02:00
7342923d98
gnu: wgetpaste: Add and use wget input.
...
This package has but one purpose; late binding's overkill.
* gnu/packages/wget.scm (wgetpaste)[arguments]: Add ‘use-inputs’ phase.
[inputs]: Add wget.
2019-04-26 04:36:02 +02:00
4f7db08571
gnu: hcxdumptool: Update to 5.1.4.
...
* gnu/packages/networking.scm (hcxdumptool): Update to 5.1.4.
2019-04-26 00:58:16 +02:00
03c443ce8f
gnu: hcxtools: Update to 5.1.4.
...
* gnu/packages/networking.scm (hcxtools): Update to 5.1.4.
2019-04-26 00:58:06 +02:00
55036ddc9a
gnu: soundtouch: Update to 2.1.1.
...
* gnu/packages/audio.scm (soundtouch): Update to 2.1.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
Remove patches.
* gnu/packages/patches/soundtouch-CVE-2018-1000223.patch,
gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2019-04-26 00:56:32 +02:00
88507036f6
gnu: tmux-xpanes: Update to 4.1.0.
...
* gnu/packages/tmux.scm (tmux-xpanes): Update to 4.1.0.
2019-04-26 00:54:00 +02:00
9be92490b5
gnu: librepcb: Update to 0.1.1.
...
* gnu/packages/engineering.scm (librepcb): Update to 0.1.1.
2019-04-26 01:58:30 +05:30
ca3cf2d58e
gnu: tmux: Update to 2.9.
...
* gnu/packages/tmux.scm (tmux): Update to 2.9.
2019-04-25 13:57:09 -04:00
c3634df2a4
gnu: ocaml@4.02: Remove the package, affected by a CVE, and its dependent
...
packages.
This fixes <https://bugs.gnu.org/27462 >.
* gnu/packages/ocaml.scm (ocaml-4.02, camlp4-4.02, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit)
(ocaml4.02-camlzip, ocaml4.02-ocamlmod, ocaml4.02-zarith)
(ocaml4.02-qcheck, ocaml4.02-qtest, ocaml4.02-stringext)
(ocaml4.02-bisect, ocaml4.02-bitstring, ocaml4.02-result)
(ocaml4.02-topkg, ocaml4.02-rresult, ocaml4.02-sqlite3, ocaml4.02-csv)
(ocaml4.02-mtime, ocaml4.02-cmdliner, ocaml4.02-fmt, ocaml4.02-astring)
(ocaml4.02-alcotest, ocaml4.02-ppx-tools, ocaml4.02-react, ocaml4.02-ssl)
(ocaml4.02-lwt, ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath)
(ocaml4.02-bos, ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar)
(ocaml4.02-uutf, ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64)
(ocaml4.02-omake, ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-bin-prot, ocaml4.02-fieldslib)
(ocaml4.02-ppx-core, ocaml4.02-ppx-optcomp, ocaml4.02-ppx-driver)
(ocaml4.02-cppo, ocaml4.02-ppx-deriving, ocaml4.02-ppx-type-conv)
(ocaml4.02-ppx-inline-test, ocaml4.02-ppx-bench, ocaml4.02-ppx-compare)
(ocaml4.02-sexplib, ocaml4.02-typerep, ocaml4.02-variantslib)
(ocaml4.02-ppx-sexp-conv, ocaml4.02-ppx-variants-conv)
(ocaml4.02-ppx-here, ocaml4.02-ppx-assert, ocaml4.02-ppx-enumerate)
(ocaml4.02-ppx-let, ocaml4.02-ppx-typerep-conv, ocaml4.02-ppx-sexp-value)
(ocaml4.02-ppx-pipebang, ocaml4.02-ppx-bin-prot, ocaml4.02-ppx-fail)
(ocaml4.02-ppx-custom-printf, ocaml4.02-ppx-sexp-message)
(ocaml4.02-ppx-fields-conv, ocaml4.02-seq, ocaml4.02-re)
(ocaml4.02-ppx-expect, ocaml4.02-ppx-jane, ocaml4.02-core-kernel)
(ocaml4.02-async-kernel, ocaml4.02-async-rpc-kernel, ocaml4.02-core)
(ocaml4.02-async-unix, ocaml4.02-async-extra, ocaml4.02-async)
(ocaml4.02-ocplib-endian, ocaml4.02-easy-format, optcomp)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): Remove variables.
* guix/build-system/ocaml.scm (default-ocaml4.02)
(default-ocaml4.02-findlib, package-with-ocaml4.02)
(strip-ocaml4.02-variant): Remove variables.
2019-04-25 19:01:31 +02:00
6e49426761
gnu: ocamlify: Downgrade to 0.0.1.
...
Version 0.0.2 cannot be built with the latest OCaml, whereas this
version does. This is also the version used by opam.
* gnu/packages/ocaml.scm (ocamlify): Downgrade to 0.0.1.
[arguments]: Do not use ocaml-4.02.
2019-04-25 19:01:05 +02:00
0705f389d1
gnu: Remove ocaml-jbuilder.
...
Jbuilder is deprecated and replaced by dune.
* gnu/packages/ocaml.scm (ocaml-jbuilder): Remove variable.
(ocaml-zed, ocaml-utop): Use dune-build-system.
2019-04-25 19:00:48 +02:00
bbe9915b30
gnu: bap: Update to 1.6.0.
...
* gnu/packages/ocaml.scm (bap): Update to 1.6.0.
(ocaml-frontc): Update to 3.4.1.
(ocaml-fileutils, ocaml-cstruct, ocaml-hex, ocaml-ezjsonm, ocaml-uri):
New variables.
(ocaml4.02-fileutils, ocaml4.02-cstruct, ocaml4.02-hex,
ocaml4.02-ezjsonm, ocaml4.02-uri): Remove variables.
2019-04-25 19:00:25 +02:00
ce9a30e6f4
gnu: Add ocaml-bigarray-compat.
...
* gnu/packages/ocaml.scm (ocaml-bigarray-compat): New variable.
2019-04-25 18:59:55 +02:00
cd8dce8ac4
gnu: gnome-shell: Add gdk-pixbuf+svg to inputs.
...
Fixes <https://bugs.gnu.org/34124 >.
* gnu/packages/gnome.scm (gnome-shell)[inputs]: Add gdk-pixbuf+svg.
[arguments]: Add the lib directory of gdk-pixbuf+svg to the LD_LIBRARY_PATH
wrapper of the gnome-shell executable.
2019-04-25 15:30:07 +02:00
92e1e0ec4b
gnu: fltk: Update to 1.3.5.
...
* gnu/packages/fltk.scm (fltk): Update to 1.3.5.
2019-04-25 14:59:16 +02:00
4728806185
gnu: Add python-yubikey-manager and python2-yubikey-manager.
...
* gnu/packages/security-token.scm (python-yubikey-manager)
(python2-yubikey-manager): New variables.
2019-04-24 21:08:39 -07:00
5297e97599
gnu: Add python-fido2 and python2-fido2.
...
* gnu/packages/security-token.scm (python-fido2, python2-fido2): New
variables.
2019-04-24 21:08:39 -07:00
41553c90e4
gnu: Add public-suffix-list.
...
* gnu/packages/dns.scm (public-suffix-list): New variable.
2019-04-24 21:08:39 -07:00
5f7d151c77
gnu: Add libu2f-host.
...
* gnu/packages/security-token.scm (libu2f-host): New variable.
2019-04-24 21:08:39 -07:00
404037f83d
gnu: Add python-pyscard and python2-pyscard.
...
* gnu/packages/security-token.scm (python-pyscard, python2-pyscard): New
variables.
2019-04-24 21:08:38 -07:00
968e86bd93
gnu: Add python-pyfakefs and python2-pyfakefs.
...
* gnu/packages/patches/python-pyfakefs-remove-bad-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
* gnu/packages/check.scm (python-pyfakefs, python2-pyfakefs): New
variables.
2019-04-24 21:08:36 -07:00
0406434baa
gnu: bind: Update to 9.12.4-P1 [fixes CVE-2018-5743, CVE-2019-6467].
...
* gnu/packages/dns.scm (isc-bind): Update to 9.12.4-P1.
[source]: Add patch.
[inputs]: Add python and python-ply.
* packages/patches/bind-fix-unused-pk11-ecc-constants.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-04-25 04:42:17 +02:00
9b19734c50
gnu: r-yamss: Fix typo in description.
...
* gnu/packages/bioconductor.scm (r-yamss)[description]: Fix typo.
2019-04-25 04:42:16 +02:00
61985d650b
gnu: python-dill: Fix typo in description.
...
* gnu/packages/python-xyz.scm (python-dill)[description]: Fix typo.
2019-04-25 04:42:16 +02:00
52beae7b8a
gnu, guix: Yearly ritual purging of the filesystems.
...
* gnu/packages/android.scm (android-ext4-utils)[synopsis]: Fix ‘file
system’ spelling.
* gnu/packages/disk.scm (rmlint)[synopsis, description]: Likewise.
* gnu/packages/golang.scm (go-github-com-kr-fs)[synopsis, description]:
Likewise & edit for grammar.
* gnu/packages/ipfs.scm (gx, go-ipfs)[description]: Likewise.
* /gnu/packages/java.scm (java-commons-vfs)[synopsis]: Likewise.
* gnu/packages/linux.scm (fuseiso)[description]: Likewise.
(genext2fs)[synopsis, description]: Likewise.
* gnu/packages/package-management.scm (libostree)[description]: Likewise.
* gnu/packages/python-xyz.scm (python-requests-file)[description]:
Likewise & mark up.
* gnu/packages/rails.scm (ruby-with-advisory-lock)[description]:
Likewise.
* gnu/packages/ruby.scm (ruby-rerun)[description]: Likewise.
* guix/build/go-build-system.scm (setup-go-environment)<docstring>:
Likewise.
* guix/store/deduplication.scm (get-temp-link)<docstring>: Likewise.
2019-04-25 04:42:16 +02:00
7ecd1761a2
gnu: bubblewrap: Edit description.
...
* gnu/packages/virtualization.scm (bubblewrap)[description]: Mark up & edit.
2019-04-25 04:42:16 +02:00
ac32a451fa
gnu: perl-filesys-notify-simple: Edit description.
...
* gnu/packages/perl.scm (perl-filesys-notify-simple)[description]: Mark up & edit.
2019-04-25 04:42:16 +02:00
ddfd529cc9
gnu: libimobiledevice: Edit description.
...
* gnu/packages/libusb.scm (libimobiledevice)[description]: Fix grammar & spelling.
2019-04-25 04:42:16 +02:00
2cffa2f240
gnu: libsvm: Update to 3.23.
...
* gnu/packages/machine-learning.scm (libsvm): Update to 3.23.
2019-04-25 04:42:16 +02:00
5ed720976a
gnu: openfst: Update to 1.7.2.
...
* gnu/packages/machine-learning.scm (openfst): Update to 1.7.2.
2019-04-25 04:42:16 +02:00
190dc09e95
gnu: r-xtable: Update to 1.8-4.
...
* gnu/packages/statistics.scm (r-xtable): Update to 1.8-4.
2019-04-24 17:04:54 +02:00
3a9991e4dd
gnu: r-dbplyr: Update to 1.4.0.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.0.
2019-04-24 17:04:54 +02:00
3cc8f66e95
gnu: r-testthat: Update to 2.1.1.
...
* gnu/packages/statistics.scm (r-testthat): Update to 2.1.1.
2019-04-24 17:04:54 +02:00
a300ab685a
gnu: r-igraph: Update to 1.2.4.1.
...
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.1.
2019-04-24 17:04:54 +02:00
8fc6188e4f
gnu: r-pamr: Update to 1.56.1.
...
* gnu/packages/cran.scm (r-pamr): Update to 1.56.1.
2019-04-24 17:04:54 +02:00
a059791f4e
gnu: r-ggforce: Update to 0.2.2.
...
* gnu/packages/cran.scm (r-ggforce): Update to 0.2.2.
2019-04-24 17:04:54 +02:00
88a39cc6f5
gnu: r-rms: Update to 5.1-3.1.
...
* gnu/packages/cran.scm (r-rms): Update to 5.1-3.1.
2019-04-24 17:04:53 +02:00
f1c1bbc1a6
gnu: r-genetics: Update to 1.3.8.1.2.
...
* gnu/packages/cran.scm (r-genetics): Update to 1.3.8.1.2.
2019-04-24 17:04:53 +02:00
378b5f4d1e
gnu: r-fields: Update to 9.7.
...
* gnu/packages/cran.scm (r-fields): Update to 9.7.
2019-04-24 17:04:53 +02:00
90325bb182
gnu: r-splitstackshape: Update to 1.4.8.
...
* gnu/packages/cran.scm (r-splitstackshape): Update to 1.4.8.
2019-04-24 17:04:53 +02:00
d6fc8fe1fa
gnu: r-emmeans: Update to 1.3.4.
...
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.4.
2019-04-24 17:04:53 +02:00
902905cc5b
gnu: r-sys: Update to 3.2.
...
* gnu/packages/cran.scm (r-sys): Update to 3.2.
2019-04-24 17:04:48 +02:00
5f88d81fa4
gnu: zynaddsubfx: Update to 3.0.5.
...
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.5.
2019-04-24 15:02:05 +02:00
cda12aa949
gnu: padthv1: Update to 0.9.7.
...
* gnu/packages/music.scm (padthv1): Update to 0.9.7.
2019-04-24 14:56:08 +02:00
b19392f4f4
gnu: samplv1: Update to 0.9.7.
...
* gnu/packages/music.scm (samplv1): Update to 0.9.7.
2019-04-24 14:55:59 +02:00
e39c4800f0
gnu: synthv1: Update to 0.9.7.
...
* gnu/packages/music.scm (synthv1): Update to 0.9.7.
2019-04-24 14:55:53 +02:00
e4ea33cb2a
gnu: drumkv1: Update to 0.9.7.
...
* gnu/packages/music.scm (drumkv1): Update to 0.9.7.
2019-04-24 14:47:03 +02:00
5e4ac4de79
gnu: pdfpc: Update to 4.3.2.
...
* gnu/packages/pdf.scm (pdfpc): Update to 4.3.2.
2019-04-24 14:26:02 +02:00
21e67d060b
gnu: gphoto2: Update to 2.5.20.
...
* gnu/packages/photo.scm (gphoto2): Update to 2.5.20.
2019-04-24 14:09:02 +02:00
e48c3dd990
gnu: rawtherapee: Update to 5.6.
...
* gnu/packages/photo.scm (rawtherapee): Update to 5.6.
[inputs]: Add librsvg.
2019-04-24 13:48:02 +02:00
a50452508e
gnu: youtube-dl: Update to 2019.04.24.
...
* gnu/packages/video.scm (youtube-dl): Update to 2019.04.24.
2019-04-24 13:05:02 +02:00
1c0dd73092
gnu: emacs-ledger-mode: Use ledger as input.
...
* gnu/packages/finance.scm (emacs-ledger-mode)[inputs]: Add ledger.
[arguments]: Patch path to ledger executable.
2019-04-24 11:12:02 +02:00
28341601b3
gnu: xl2tpd: Don't use NAME in source URI.
...
* gnu/packages/vpn.scm (xl2tpd)[source]: Hard-code NAME.
2019-04-24 01:47:48 +02:00
14ccd8f883
gnu: xl2tpd: Update to 1.3.14.
...
* gnu/packages/vpn.scm (xl2tpd): Update to 1.3.14.
2019-04-24 01:47:48 +02:00
7067d5f654
gnu: ristretto: Don't use NAME in source URI.
...
* gnu/packages/xfce.scm (ristretto)[source]: Hard-code NAME.
2019-04-24 01:47:48 +02:00
177d1af038
gnu: ristretto: Update to 0.8.4.
...
* gnu/packages/xfce.scm (ristretto): Update to 0.8.4.
2019-04-24 01:47:48 +02:00
b990f986f4
gnu: inxi-minimal: Update to 3.0.33-1.
...
* gnu/packages/admin.scm (inxi-minimal): Update to 3.0.33-1.
2019-04-24 01:47:48 +02:00
ca983a2fc1
gnu: python2-sh: Fix build.
...
* gnu/packages/python-xyz.scm (python-sh): Fix build error with Python 2 due
to failing tests.
2019-04-24 00:47:23 +02:00
37da4fbe15
Merge branch 'master' into staging
2019-04-23 19:43:59 +02:00
e01bd1a674
gnu: libseccomp: Update to 2.4.1.
...
* gnu/packages/linux.scm (libseccomp): Update to 2.4.1.
2019-04-23 19:39:03 +02:00
af1d777e6c
gnu: maim: Update to 5.5.3.
...
* gnu/packages/xdisorg.scm (maim): Update to 5.5.3.
2019-04-23 19:39:03 +02:00
8949b64004
gnu: fluidsynth: Update to 2.0.5.
...
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.5.
2019-04-23 19:39:03 +02:00
a18581a02d
gnu: libpng: Replace with 1.6.37 [security fixes].
...
This fixes CVE-2018-14048, CVE-2018-14550, and CVE-2019-7317.
* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng-1.6.37): New public variable.
2019-04-23 19:39:03 +02:00
30023aa670
gnu: xf86-video-intel: Update to 2.99.917-13.6afed33.
...
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-13.6afed33.
2019-04-23 19:39:02 +02:00
9694b44e3b
gnu: notmuch-addrlookup-c: Update to 9.
...
* gnu/packages/mail.scm (notmuch-addrlookup-c): Update to 9.
[arguments]: Remove PREFIX from #:make-flags.
2019-04-23 22:06:45 +05:30
74ee98eed4
gnu: ocaml-ppx-hash: Fix typo in description.
...
* gnu/packages/ocaml.scm (ocaml-ppx-hash)[description]:
Fix non-functional typo.
2019-04-23 18:14:49 +02:00
97f4ff6d29
gnu: libedit: Update to 20190324-3.1.
...
* gnu/packages/libedit.scm (libedit): Update to 20190324-3.1.
2019-04-23 18:13:05 +02:00
ef93b55e42
gnu: lynis: Update to 2.7.4.
...
* gnu/packages/admin.scm (lynis): Update to 2.7.4.
2019-04-23 18:13:05 +02:00
7b7abb07c2
gnu: libmwaw: Don't use NAME in source URI.
...
* gnu/packages/libreoffice.scm (libmwaw)[source]: Hard-code NAME.
2019-04-23 18:13:05 +02:00
9148ed7cd2
gnu: libodfgen: Don't use NAME in source URI.
...
* gnu/packages/libreoffice.scm (libodfgen)[source]: Hard-code NAME.
2019-04-23 18:13:05 +02:00
9a4f6ceb10
gnu: libvisio: Don't use NAME in source URI.
...
* gnu/packages/libreoffice.scm (libvisio)[source]: Hard-code NAME.
2019-04-23 18:13:05 +02:00
cb4c99ceb9
gnu: libpagemaker: Don't use NAME in source URI.
...
* gnu/packages/libreoffice.scm (libpagemaker)[source]: Hard-code NAME.
2019-04-23 18:13:05 +02:00
44aaf1e00a
gnu: libmwaw: Update to 0.3.15.
...
* gnu/packages/libreoffice.scm (libmwaw): Update to 0.3.15.
2019-04-23 18:13:05 +02:00
be59c48d15
gnu: perceptualdiff: Don't use unstable tarball.
...
It's still broken by freeimage, unfortunately.
* gnu/packages/image.scm (perceptualdiff)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2019-04-23 18:13:05 +02:00
645b6c7fc7
gnu: gifsicle: Use HTTPS.
...
* gnu/packages/image.scm (gifsicle)[source, home-page]: Use HTTPS.
2019-04-23 18:13:04 +02:00
5c46e1dda8
gnu: gifsicle: Update to 1.92.
...
* gnu/packages/image.scm (gifsicle): Update to 1.92.
2019-04-23 18:13:04 +02:00
9fb1ca0808
gnu: shepherd: Update to 0.6.0.
...
* gnu/packages/admin.scm (shepherd): Update to 0.6.0. Use
"mirror://gnu" as the URL base.
[properties]: Remove.
2019-04-23 16:38:11 +02:00
93c5c6d164
gnu: spirv-headers: Update to 1.3.7.
...
* gnu/packages/vulkan.scm (spirv-headers): Update to 1.3.7.
2019-04-23 11:03:56 +02:00
b2e417f3f1
gnu: glslang: Update to 7.11.3188.
...
* gnu/packages/vulkan.scm (glslang): Update to 7.11.3188.
2019-04-23 11:03:56 +02:00
83126aa8a9
gnu: emacs-disk-usage: Update to 1.3.3.
...
* gnu/packages/emacs-xyz.scm (emacs-disk-usage): Update to 1.3.3.
2019-04-23 10:43:54 +02:00
fa61900705
gnu: openssh: Update to 8.0p1.
...
* gnu/packages/ssh.scm (openssh): Update to 8.0p1.
[source]: Remove patch.
* gnu/packages/patches/openssh-CVE-2018-20685.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-04-22 15:02:16 -04:00
8c064d01a0
gnu: minetest: Simplify 'freetype' input specification.
...
* gnu/packages/games.scm (minetest)[inputs]: Eliminate an unnecessary
use of Guile's '@' syntax to reference the 'freetype' package.
2019-04-22 15:02:13 -04:00
ab0c796b67
gnu: minetest-data: Update to 5.0.1.
...
* gnu/packages/games.scm (minetest-data): Update to 5.0.1.
[description]: Fix typo.
2019-04-22 15:02:11 -04:00
df129041dd
gnu: maxima: Return #t from custom 'check' phase.
...
* gnu/packages/maths.scm (maxima)[arguments]: Use invoke in the custom
check phase.
2019-04-22 14:58:24 -04:00
233eb6c8fe
gnu: ghc-haskell-lexer: Update to 1.0.2.
...
* gnu/packages/haskell.scm (ghc-haskell-lexer): Update to 1.0.2.
2019-04-22 18:08:18 +02:00
a263a97687
gnu: python-redis: Update to 3.2.1.
...
* gnu/packages/databases.scm (python-redis): Update to 3.2.1.
2019-04-22 15:20:34 +02:00
4dfdcbf5fe
gnu: libabigail: Don't use NAME in source URI.
...
* gnu/packages/elf.scm (libabigail)[source]: Hard-code NAME.
2019-04-22 15:03:59 +02:00
29cc115436
gnu: libabigail: Update to 1.6.
...
* gnu/packages/elf.scm (libabigail): Update to 1.6.
2019-04-22 15:03:52 +02:00
1f2f358b69
gnu: python-sqlalchemy: Update to 1.3.3.
...
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.3.
2019-04-22 14:55:58 +02:00
15357dd7a9
gnu: nsd: Update to 4.1.27.
...
* gnu/packages/dns.scm (nsd): Update to 4.1.27.
2019-04-22 14:53:48 +02:00
ba18ea5f41
gnu: python-pyodbc: Update to 4.0.26.
...
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.26.
2019-04-22 14:25:14 +02:00
fe74e6ac6b
gnu: memcached: Update to 1.5.13.
...
* gnu/packages/databases.scm (memcached): Update to 1.5.13.
2019-04-22 14:17:00 +02:00
7f221c0e0d
gnu: translate-shell: Update to 0.9.6.10.
...
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.10.
2019-04-22 14:12:37 +02:00
6dc4dceba5
gnu: linux-libre: Update to 5.0.9.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.9.
(%linux-libre-hash): Update hash.
2019-04-22 07:08:08 -04:00
e81148a11d
gnu: linux-libre@4.19: Update to 4.19.36.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.36.
(%linux-libre-4.19-hash): Update hash.
2019-04-22 07:06:57 -04:00
689b628025
gnu: linux-libre@4.14: Update to 4.14.113.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.113.
(%linux-libre-4.14-hash): Update hash.
2019-04-22 07:05:55 -04:00
cfb7aee078
gnu: linux-libre@4.9: Update to 4.9.170.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.170.
2019-04-22 07:04:04 -04:00
54b41d2d71
gnu: Add pass-otp.
...
* gnu/packages/password-utils.scm (pass-otp): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2019-04-22 10:28:43 +01:00
5554155649
gnu: password-store: Allow external packages to provide extensions.
...
* gnu/packages/password-utils.scm (password-store): Add mechanism for
providing pass extensions in separate packages.
[arguments]: Add patch-system-extension-dir phase.
[native-search-paths]: Add PASSWORD_STORE_SYSTEM_EXTENSION_DIR.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2019-04-22 10:28:43 +01:00
c60b15cc62
gnu: python-dill: Update to 0.2.9.
...
* gnu/packages/python-xyz.scm (python-dill): Update to 0.2.9.
2019-04-22 02:36:21 +02:00
1d3c78036f
gnu: python-serpent: Tweak description.
...
* gnu/packages/python-xyz.scm (python-serpent)[description]:
Use @code{} and edit slightly.
2019-04-22 02:36:21 +02:00
fa9d14ac50
gnu: python-serpent: Update to 1.28.
...
* gnu/packages/python-xyz.scm (python-serpent): Update to 1.28.
[native-inputs]: Add python-attrs & python-pytz.
2019-04-22 02:36:21 +02:00
441e6d936f
gnu: python-openpyxl: Update to 2.6.2.
...
* gnu/packages/python-xyz.scm (python-openpyxl): Update to 2.6.2.
2019-04-22 02:36:20 +02:00
654563ec83
gnu: perl-text-csv: Fix build.
...
* gnu/packages/perl.scm (perl-text-csv)[source]: Update URL.
2019-04-22 02:36:20 +02:00
8dafe89593
gnu: parallel: Update to 20190422.
...
* gnu/packages/parallel.scm (parallel): Update to 20190422.
2019-04-22 02:36:20 +02:00
5df6934cdb
gnu: eid-mw: Update to 4.4.16.
...
* gnu/packages/security-token.scm (eid-mw): Update to 4.4.16.
2019-04-22 02:32:13 +02:00
50b01dcf3c
gnu: dbacl: Don't use NAME in source URI.
...
* gnu/packages/textutils.scm (dbacl)[source]: Hard-code NAME.
2019-04-22 02:32:13 +02:00
3671cbe51a
gnu: youtube-dl: Update to 2019.04.17.
...
* gnu/packages/video.scm (youtube-dl): Update to 2019.04.17.
2019-04-22 02:32:12 +02:00
34a169010e
gnu: dav1d: Update to 0.2.2.
...
* gnu/packages/video.scm (dav1d): Update to 0.2.2.
2019-04-22 02:32:12 +02:00
f465562b10
gnu: foo2zjs: Update to 20190413.
...
* gnu/packages/cups.scm (foo2zjs): Update to 20190413.
2019-04-22 02:32:12 +02:00
56a4858210
gnu: supertuxkart: Simplify unbundling and unbundle enet.
...
* gnu/packages/games.scm (supertuxkart)[source](snippet): Delete "lib/enet".
Remove "CMakeList.txt" substitution.
[arguments]<#:configure-flags>: Add "-DUSER_SYSTEM_GLEW=TRUE" and
"-DUSE_SYSTEM_ENET=TRUE".
<#:phases>: Delete.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2019-04-21 22:50:22 +01:00
60af1822d4
gnu: supertuxkart: Update to 1.0.
...
* gnu/packages/games.scm (supertuxkart): Update to 1.0.
[inputs]: Add openssl.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2019-04-21 22:50:22 +01:00
f9fee46ffb
gnu: Add alex4.
...
* gnu/packages/games.scm (alex4): New variable.
2019-04-21 10:36:19 -04:00
d61dcb1b47
gnu: Add dumb-allegro4.
...
* gnu/packages/music.scm (dumb-allegro4): New variable.
2019-04-21 10:36:19 -04:00
72385c34ba
gnu: Add dumb.
...
* gnu/packages/music.scm (dumb): New variable.
2019-04-21 10:36:19 -04:00
9729b6ea2f
gnu: direnv: Remove go references from output.
...
In the long run, it would be good to move direnv across to the
go-build-system, and update the package, but these changes do succeed in
reducing the closure size a lot.
Thanks to Tanguy Le Carrour for raising this issue on guix-devel.
* gnu/packages/shellutils.scm (direnv)[arguments]: Include the
remove-go-references phase from the go-build-system.
[inputs,native-inputs]: Move all inputs to native-inputs, as these are no
longer referenced in the output.
2019-04-21 10:38:30 +01:00
17ae31b7a8
gnu: r-hdf5r: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-hdf5r): Update to 1.2.0.
2019-04-21 10:20:56 +02:00
dbcd503c46
gnu: guile-parted: Update to 0.0.1.
...
* gnu/packages/guile-xyz.scm (guile-parted): Update to 0.0.1.
2019-04-21 09:48:26 +02:00
442a11f68f
gnu: guile-newt: Update to 0.0.1.
...
* gnu/packages/guile-xyz.scm (guile-newt): Update to 0.0.1.
2019-04-21 09:45:36 +02:00
1b0b1651b1
gnu: mtools: 'mformat' initializes boot sector before writing it.
...
This is the last bit fixing <https://bugs.gnu.org/35283 >.
Previously, 'mformat' (used by 'grub-mkrescue') would pass uninitialized
bytes to write(2), leading to non-deterministic FAT image contents.
This patch fixes that.
* gnu/packages/patches/mtools-mformat-uninitialized.patch: New file.
* gnu/packages/mtools.scm (mtools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-04-21 00:51:19 +02:00
5502fbd7fd
gnu: valgrind: Add 3.15.0.
...
* gnu/packages/valgrind.scm (valgrind-3.15): New variable.
2019-04-21 00:51:19 +02:00
52b5fe5bcf
gnu: grub: 'grub-mkrescue' honors 'GRUB_FAT_SERIAL_NUMBER'.
...
* gnu/packages/patches/grub-efi-fat-serial-number.patch: New file.
* gnu/packages/bootloaders.scm (grub)[source](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-04-21 00:51:18 +02:00
a3e6cf9876
gnu: Add git-lfs.
...
* gnu/packages/version-control.scm (git-lfs): New variable.
2019-04-20 16:40:35 -04:00
2ca3fdc2db
gnu: shishi: Make shishi keys and database administrator-modifiable.
...
Fixes <https://bugs.gnu.org/30109 >.
* gnu/packages/kerberos.scm (shishi)[arguments]<#:configure-flags>:
Add --with-key-dir, --with-db-dir.
<#:phases>[disable-automatic-key-generation]: New phase.
2019-04-20 17:17:56 +02:00
afabb9ecfb
gnu: ibus-libpinyin: Add missing runtime input.
...
* gnu/packages/ibus.scm (ibus-libpinyin)[inputs]: Add python-pygobject.
2019-04-20 12:33:10 +02:00
446130300e
gnu: libpinyin: Update to 2.3.0.
...
* gnu/packages/ibus.scm (libpinyin): Update to 2.3.0.
2019-04-20 12:26:12 +02:00
811eae11cd
gnu: ibus-libpinyin: Update to 1.11.0.
...
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.11.0.
2019-04-20 12:26:12 +02:00
b2c6b467f3
gnu: ibus: Update to 1.5.20.
...
* gnu/packages/ibus.scm (ibus): Update to 1.5.20.
[arguments]: Remove make-flags; remove "--disable-python2" from
configure-flags; add build phase "patch-python-target-directories".
[inputs]: Replace intltool with gnu-gettext.
2019-04-20 12:26:08 +02:00
73326e742d
gnu: Add emacs-robot-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-robot-mode): New variable.
2019-04-19 20:27:27 -04:00
5b84c12022
gnu: Add python-robotframework-lint.
...
* gnu/packages/python-xyz.scm (python-robotframework-lint): New variable.
2019-04-19 20:27:27 -04:00
c0c64f175c
gnu: Add python-robotframework-sshlibrary.
...
* gnu/packages/python-xyz.scm (python-robotframework-sshlibrary): New variable.
2019-04-19 20:27:27 -04:00
b979028527
gnu: Add python-robotframework.
...
* gnu/packages/python-xyz.scm (python-robotframework): New variable.
* gnu/packages/patches/python-robotframework-honor-source-date-epoch.patch:
Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
2019-04-19 20:27:27 -04:00
c0c0bb3823
gnu: Add python-rellu.
...
* gnu/packages/python-xyz.scm (python-rellu): New variable.
2019-04-19 20:27:27 -04:00
d5a998fa4c
gnu: Add python-pygithub.
...
* gnu/packages/python-xyz.scm (python-pygithub): New variable.
2019-04-19 20:27:21 -04:00
1e72a23d49
gnu: rct: Be more idiomatic.
...
* gnu/packages/cpp.scm (rct): Move the call to 'git-version' into the
package definition.
[source]: Explicitly include the source URI rather than using
'home-page'.
2019-04-19 15:14:54 -04:00
18f8770d58
gnu: linux-libre: Update to 5.0.8.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.8.
(%linux-libre-hash): Update hash.
2019-04-19 14:29:20 -04:00
5547653eb8
gnu: linux-libre@4.19: Update to 4.19.35.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.35.
(%linux-libre-4.19-hash): Update hash.
2019-04-19 14:27:42 -04:00
3f6b7699cd
gnu: linux-libre@4.14: Update to 4.14.112.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.112.
(%linux-libre-4.14-hash): Update hash.
2019-04-19 14:26:59 -04:00
a85190ddd0
gnu: linux-libre@4.9: Update to 4.9.169.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.169.
2019-04-19 14:26:19 -04:00
107850b391
gnu: Add r-styler.
...
* gnu/packages/cran.scm (r-styler): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-04-19 19:14:24 +02:00
2613bab627
gnu: grammalecte: Update to 1.0.1.
...
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.0.1.
[source]: Update URL.
2019-04-19 18:37:22 +02:00
60ecacdeaa
gnu: linkchecker: Shorten patch file name.
...
This file name was too long for 'tar', as reported by 'guix lint'.
* gnu/packages/patches/linkchecker-mark-more-tests-that-require-the-network.patch:
Rename to...
* gnu/packages/patches/linkchecker-tests-require-network.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/web.scm (linkchecker)[source]: Likewise.
2019-04-19 17:46:40 +02:00
30a6cd7cd0
gnu: ocaml-dose3: Shorten patch file name.
...
This file name was too long for 'tar', as reported by 'guix lint'.
* gnu/packages/patches/ocaml-dose3-Add-unix-as-dependency-to-dose3.common-in-META.in.patch:
Rename to...
* gnu/packages/patches/ocaml-dose3-add-unix-dependency.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ocaml.scm (ocaml-dose3)[source]: Adjust accordingly.
2019-04-19 17:46:40 +02:00
b24fd2c268
gnu: Add python-deprecated.
...
* gnu/packages/python-xyz.scm (python-deprecated): New variable.
2019-04-19 10:56:47 -04:00
13d825fcb6
gnu: Add python-scp.
...
* gnu/packages/python-xyz.scm (python-scp): New variable.
2019-04-19 10:56:47 -04:00
0f0a5ef9e8
gnu: Add python-bumpversion.
...
* gnu/packages/python-xyz.scm (python-bumpversion): New variable.
2019-04-19 10:56:46 -04:00
296da6e624
gnu: r-seurat: Update to 3.0.0.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0.
[propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc,
r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and
r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang,
r-rsvd, r-scales, and r-sctransform.
2019-04-19 15:38:47 +02:00
9b86fea05f
gnu: Add r-sctransform.
...
* gnu/packages/cran.scm (r-sctransform): New variable.
2019-04-19 15:38:46 +02:00
7015ae6881
gnu: r-urltools: Update to 1.7.3.
...
* gnu/packages/cran.scm (r-urltools): Update to 1.7.3.
2019-04-19 14:43:34 +02:00
f0826fec46
gnu: r-rdpack: Update to 0.11-0.
...
* gnu/packages/cran.scm (r-rdpack): Update to 0.11-0.
2019-04-19 14:43:29 +02:00
Ricardo Wurmus