60e36bff1f
gnu: r-adaptivesparsity: Add dependency on Armadillo.
...
Fixes a link error whereby -larmadillo would not be found.
* gnu/packages/machine-learning.scm (r-adaptivesparsity)[inputs]: New
field.
2017-09-22 18:40:57 +02:00
abe97a58be
gnu: dlib: Update to 19.7.
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* gnu/packages/machine-learning.scm (dlib): Update to 19.7.
[arguments]: Add #:configure-flags. Remove redundant CXXFLAGS from 'check' phase.
2017-09-21 20:08:02 +02:00
d10092b849
gnu: Put autoconf-related phases immediately after the 'unpack phase.
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* gnu/packages/audio.scm (audacity, rtmidi)[arguments]: Correct phases
accordingly.
* gnu/packages/bioinformatics.scm (mash, seek, vsearch, emboss,
htslib-for-sambamba)[arguments]: Likewise.
* gnu/packages/ci.scm (cuirass)[arguments]: Likewise.
* gnu/packages/compression.scm (minizip, xdelta)[arguments]: Likewise.
* gnu/packages/cpp.scm (libzen)[arguments]: Likewise.
* gnu/packages/crypto.scm (opendht)[arguments]: Likewise.
* gnu/packages/databases.scm (4store, mdbtools)[arguments]: Likewise.
* gnu/packages/debug.scm (stress-make)[arguments]: Likewise.
* gnu/packages/dns.scm (dnscrypt-proxy, dnscrypt-wrapper)[arguments]:
Likewise.
* gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Likewise.
* gnu/packages/embedded.scm (libjaylink, openocd)[arguments]: Likewise.
* gnu/packages/engineering.scm (gerbv)[arguments]: Likewise.
* gnu/packages/erlang.scm (erlang)[arguments]: Likewise.
* gnu/packages/ftp.scm (weex)[arguments]: Likewise.
* gnu/packages/gnome.scm (dia)[arguments]: Likewise.
* gnu/packages/gnunet.scm (gnurl, guile-gnunet)[arguments]: Likewise.
* gnu/packages/gtk.scm (guile-rsvg, graphene)[arguments]: Likewise.
* gnu/packages/guile.scm (guildhall, guile-ics, guile-sqlite3)[arguments]:
Likewise.
* gnu/packages/ibus.scm (ibus-libpinyin)[arguments]: Likewise.
* gnu/packages/irc.scm (weechat)[arguments]: Likewise.
* gnu/packages/java.scm (classpath-devel)[arguments]: Likewise.
* gnu/packages/libreoffice.scm (libetonyek)[arguments]: Likewise.
* gnu/packages/libusb.scm (hidapi)[arguments]: Likewise.
* gnu/packages/linux.scm (gpm)[arguments]: Likewise.
* gnu/packages/logging.scm (glog)[arguments]: Likewise.
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Likewise.
* gnu/packages/mail.scm (dovecot-trees, dovecot-libsodium-plugin, esmtp)
[arguments]: Likewise.
* gnu/packages/messaging.scm (freetalk, libmesode, libstrophe)[arguments]:
Likewise.
* gnu/packages/microcom.scm (microcom)[arguments]: Likewise.
* gnu/packages/ocaml.scm (ocaml-ssl)[arguments]: Likewise.
* gnu/packages/parallel.scm (slurm)[arguments]: Likewise.
* gnu/packages/pdf.scm (libharu)[arguments]: Likewise.
* gnu/packages/samba.scm (cifs-utils)[arguments]: Likewise.
* gnu/packages/serialization.scm (msgpack)[arguments]: Likewise.
* gnu/packages/shells.scm (scsh)[arguments]: Likewise.
* gnu/packages/telephony.scm (libiax2)[arguments]: Likewise.
* gnu/packages/textutils.scm (dotconf)[arguments]: Likewise.
* gnu/packages/version-control.scm (findnewest)[arguments]: Likewise.
* gnu/packages/video.scm (libmediainfo, mediainfo)[arguments]: Likewise.
2017-09-04 00:10:59 -04:00
9e37e537a2
gnu: Add missing references to (gnu packages cran).
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This is a follow-up to commit a8cba9dd11
2017-08-03 22:15:57 +02:00
b32208e7b5
gnu: Add ocaml4.01-mcl.
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* gnu/packages/machine-learning.scm (ocaml4.01-mcl): New variable.
2017-05-10 22:13:55 +02:00
d1e4ad1b02
gnu: Fix typos in descriptions.
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* gnu/packages/admin.scm (di)[description]: Likewise.
* gnu/packages/bioinformatics.scm (r-annotate)[description]: Likewise.
* gnu/packages/datastructures.scm (sparsehash)[description]: Likewise.
* gnu/packages/dns.scm (knot)[description]: Likewise.
* gnu/packages/emacs.scm (emacs-idle-highlight)[synopsis, description]:
Likewise.
* gnu/packages/gnome.scm (libpeas)[description]: Likewise.
* gnu/packages/gtk.scm (python2-pygtk)[description]: Likewise.
* gnu/packages/kde-frameworks.scm (kactivities)[description]: Fix typo.
* gnu/packages/libevent.scm (perl-anyevent)[description]: Likewise.
* gnu/packages/machine-learning.scm (ghmm)[description]: Likewise.
* gnu/packages/mail.scm (mlmmj)[description]: Likewise.
* gnu/packages/maths.scm (vc)[description]: Likewise.
* gnu/packages/music.scm (gx-super-fuzz-lv2)[description]: Likewise.
* gnu/packages/networking.scm (nload)[description]: Likewise.
* gnu/packages/python.scm (python-execnet)[description]: Likewise.
* gnu/packages/terminals.scm (tilda)[description]: Likewise.
* gnu/packages/python.scm (python-execnet, python-tables)
(python2-coverage-test-runner, python2-rope)[description]: Likewise.
2017-04-17 02:04:08 +02:00
0a3063d640
gnu: Add ocaml-mcl.
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* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
2017-03-17 21:43:27 +10:00
2d7c4ae3ee
gnu: r: Rename to r-minimal.
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* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
a5a343656b
gnu: r-nnet: Move to set of recommended R packages.
...
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
2017-03-17 10:14:01 +01:00
a343c46134
gnu: dlib: Update to 19.3.
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* gnu/packages/machine-learning.scm (dlib): Update to 19.3.
[arguments]: Enable one more test.
2017-02-25 13:10:28 +01:00
0ef7ea66b9
gnu: dlib: Update to 19.2.
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* gnu/packages/machine-learning.scm (dlib): Update to 19.2.
[arguments]: Enable previously failing tests. Fix truthiness of some phases.
[source]: End snippet on #t.
2017-02-21 16:34:26 +01:00
f05c7eb48d
gnu: Add r-kernlab.
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* gnu/packages/machine-learning.scm (r-kernlab): New variable.
2016-11-28 22:43:17 +01:00
ced12a7bff
gnu: ghmm: Run tests after install.
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* gnu/packages/machine-learning.scm (ghmm)[arguments]: Move "check"
phase after "install"; add phase "fix-PYTHONPATH".
2016-10-04 08:54:55 +02:00
4781820147
gnu: randomjungle: Only build on x86_64 and i686.
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* gnu/packages/machine-learning.scm (randomjungle)[supported-systems]:
Only build on x86_64 and i686.
2016-09-23 08:23:51 +02:00
4fba38db9c
gnu: dlib: Disable failing tests.
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* gnu/packages/machine-learning.scm (dlib)[arguments]: Add phase
'disable-failing-tests' for tests that are known not to work in the current
release.
[inputs]: Add lapack.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 01:12:42 -04:00
8eaf53e366
gnu: dlib: Do not build dlib twice for tests.
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* gnu/packages/machine-learning.scm (dlib)[arguments]: Use makefile
instead of cmake in check phase to prevent full rebuild.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 01:12:42 -04:00
f40841e999
gnu: dlib: Remove unused fftw from inputs.
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* gnu/packages/machine-learning.scm (dlib)[inputs]: Remove fftw.
(define-module): Don't include algebra.scm.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-13 01:12:42 -04:00
5f0ff6a9e9
gnu: Add dlib.
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* gnu/packages/machine-learning.scm (dlib): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-18 16:22:43 -04:00
791c11d6a0
gnu: Add mcl.
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* gnu/packages/machine-learning.scm (mcl): New variable.
2016-08-08 22:08:17 +10:00
23aab4ab2c
gnu: Add ghmm.
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* gnu/packages/machine-learning.scm (ghmm): New variable.
2016-05-31 17:01:03 +02:00
25e0037a29
gnu: randomjungle: Add gfortran:lib to native-inputs.
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* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Add
gfortran:lib.
2016-05-25 21:49:08 +03:00
e4785eb816
gnu: Add r-nnet.
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* gnu/packages/machine-learning.scm (r-nnet): New variable.
2016-04-14 14:53:31 +02:00
8406138b72
gnu: Add AdaptiveSparsity.
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* gnu/packages/machine-learning.scm (r-adaptivesparsity): New variable.
2015-12-21 16:05:38 +01:00
6b5b656f71
gnu: shogun: Disable build on non-x86_64.
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* gnu/packages/machine-learning.scm (shogun)[supported-systems]: Add
field.
2015-11-02 14:27:41 +01:00
c1670a8196
gnu: shogun: Move package to machine-learning.scm.
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* gnu/packages/bioinformatics.scm (shogun): Move from here...
* gnu/packages/machine-learning.scm (shogun): ...to here.
2015-08-14 17:17:05 +02:00
19afbea136
gnu: Replace versioned gfortran inputs with just "gfortran".
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* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
"gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
(superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
(octave)[native-inputs]: Likewise.
(gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
"gfortran".
2015-06-25 18:28:54 +02:00
0931c6091c
gnu: Add randomjungle.
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* gnu/packages/machine-learning.scm (randomjungle): New variable.
2015-06-12 12:57:30 +02:00
71f80f5487
gnu: Add python-libsvm.
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* gnu/packages/machine-learning.scm (python-libsvm): New variable.
2015-06-12 12:57:30 +02:00
741115b649
gnu: Add libsvm.
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* gnu/packages/machine-learning.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-06-12 12:57:30 +02:00
Ludovic Courtès