756ac7254c
gnu: r-dexseq: Update to 1.24.2.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2.
2017-12-19 20:35:03 +01:00
8d11ef4470
gnu: r-vegan: Update to 2.4-5.
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* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5.
2017-12-19 20:35:02 +01:00
618f0582b4
upstream: Reject bogus archive type guesses.
...
This would crash 'guix refresh -u' with source URLs ending in
"…/v1.2.3".
* guix/upstream.scm (package-update): Be stricter when determining
ARCHIVE-TYPE.
2017-12-19 18:16:47 +01:00
68f1869cfc
gnu: xfce4-session: Disable (duplicate) Gtk+ icon cache generation.
...
* gnu/packages/xfce.scm (xfce4-session)[arguments]: Add make-flags to disable
Gtk+ icon cache generation.
2017-12-19 18:11:56 +01:00
9a56cf2b5b
services: urandom-seed: Try using a HWRNG to seed the Linux CRNG at boot.
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* gnu/services/base.scm (urandom-seed-shepherd-service): Try to read from
'/dev/hwrng' at boot, as a supplement to any saved random seed.
* doc/guix.texi (Base Services): Document the new feature.
2017-12-19 11:31:24 -05:00
a8db968fa4
gnu: wxmaxima: Update to 17.10.1.
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* gnu/packages/maths.scm (wxmaxima): Update to 17.10.1.
2017-12-19 11:26:16 -05:00
7a070f020b
gnu: Add quakespasm.
...
* gnu/packages/games.scm (quakespasm): New variable.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-12-19 10:21:14 -05:00
0464dc1c1e
gnu: gajim: Update to 0.16.9.
...
* gnu/packages/messaging.scm (gajim): Update to 0.16.9.
2017-12-19 13:17:17 +01:00
f3b985fa61
gnu: python-nbxmpp: Update to 0.6.1.
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* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.1.
2017-12-19 13:17:16 +01:00
21bc352664
gnu: dino: Update to 0.0-3.f25fadde2.
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* gnu/packages/messaging.scm (dino): Update to 0.0-3.f25fadde2.
2017-12-19 13:16:53 +01:00
79b43bc3a1
gnu: pcsc-lite: Update to 1.8.23.
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* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23.
[arguments]: Disable libsystemd check.
2017-12-19 13:16:42 +01:00
b28e05d45e
gnu: antiword: Fix broken embedded directory name.
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* gnu/packages/textutils.scm (antiword)[arguments]: Replace "configure" phase
to substitute reference to "/usr/share/antiword" with the actual directory in
the store.
2017-12-19 13:16:36 +01:00
fb6ca493f1
gnu: Update gwl to 0.1.1.
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* gnu/packages/package-management.scm (gwl): Update to 0.1.1.
2017-12-19 12:27:43 +01:00
ba1ba9fcbd
gnu: emulation-station: Add missing file-name field.
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* gnu/packages/games.scm (emulation-station)[source]: Add missing
file-name field.
2017-12-19 12:19:04 +02:00
28fc96cb1e
gnu: Update r-cowplot to 0.9.2.
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* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.2.
2017-12-19 10:47:19 +01:00
a1ac7bf361
tests: Adjust php-fpm test to new nginx API.
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Fixes <https://bugs.gnu.org/29769 >.
Reported by Mark H Weaver <mhw@netris.org>.
This is a followup to 8b223ceac4
2017-12-19 09:53:56 +01:00
4a408d847e
gnu: mpd: Update to 0.20.13.
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* gnu/packages/mpd.scm (mpd): Update to 0.20.13.
2017-12-19 02:28:06 -05:00
4fad6598c6
gnu: keepassxc: Update to 2.2.4.
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* gnu/packages/password-utils.scm (keepassxc): Update to 2.2.4.
2017-12-19 01:18:24 -05:00
4498cbd7ad
gnu: GnuPG pinentry: Update to 1.1.0.
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* gnu/packages/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-gnome3,
pinentry-qt): Update to 1.1.0.
2017-12-18 23:25:20 -05:00
7a6a08c945
gnu: linux-libre: Update to 4.14.7.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.7.
(%linux-libre-hash): Update hash.
2017-12-18 19:52:02 -05:00
48e1f44415
gnu: linux-libre@4.9: Update to 4.9.70.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.70.
2017-12-18 19:51:22 -05:00
86300e61b9
gnu: linux-libre@4.4: Update to 4.4.106.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.106.
2017-12-18 19:50:39 -05:00
98bd11cfe7
gnu: termite: Update to 13.
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* gnu/packages/terminals.scm (termite): Update to 13.
2017-12-19 01:37:22 +01:00
972fa87039
gnu: pcsc-lite: Update to 1.8.23.
...
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23.
[arguments]<#:configure-flags>: Add "--disable-libsystemd".
[license]: Adjust to removed sd-daemon files.
2017-12-19 01:30:14 +01:00
937790df9d
gnu: qemu: Update to 2.10.2.
...
* gnu/packages/patches/qemu-CVE-2017-15118.patch,
gnu/packages/patches/qemu-CVE-2017-15119.patch,
gnu/packages/patches/qemu-CVE-2017-15268.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.2.
[source](patches): Remove obsolete.
2017-12-19 01:15:09 +01:00
2ea3333504
gnu: libjpeg-turbo: Update to 1.5.3.
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* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.3.
2017-12-18 23:25:20 +01:00
7bd9af7376
gnu: libsodium: Update to 1.0.16.
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* gnu/packages/crypto.scm (libsodium): Update to 1.0.16.
2017-12-18 23:25:20 +01:00
8e9b3c6647
gnu: expect: Update to 5.45.3.
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* gnu/packages/tcl.scm (expect): Update to 5.45.3.
2017-12-18 23:25:20 +01:00
63dc763816
gnu: deutex: Update to 5.1.0.
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* gnu/packages/games.scm (deutex): Update to 5.1.0.
2017-12-18 17:19:58 -05:00
45f6211730
doc: Clarify treatment of the root account.
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* doc/guix.texi (operating-system Reference): Clarify the situation of
UID 0.
2017-12-18 23:17:30 +01:00
3caab236c4
guix gc: '--verify=foo' is reported as an error.
...
Fixes <https://bugs.gnu.org/29761 >.
Reported by Martin Castillo <castilma@uni-bremen.de>.
* guix/scripts/gc.scm (argument->verify-options): New procedure.
(%options) ["verify"]: Adjust to use it.
* tests/guix-gc.sh: Add test.
2017-12-18 23:17:30 +01:00
147d42fc03
gnu: emacspeak: Update to 47.0.
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* gnu/packages/emacs.scm (emacspeak): Update to 47.0.
[source]: Remove snippet.
[arguments]: Set SHELL environment variable.
2017-12-18 16:50:45 -05:00
91675d5082
gnu: rsync: Patch CVE-2017-{16548,17433,17434}.
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* gnu/packages/rsync.scm (rsync)[source]: Add patches.
[properties]: Mark CVE-2017-15994 as not relevant.
* gnu/packages/patches/rsync-CVE-2017-16548.patch,
gnu/packages/patches/rsync-CVE-2017-17433.patch,
gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch,
gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-12-18 22:53:46 +02:00
b50a9cc008
gnu: psm: Update home page URL.
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* gnu/packages/linux.scm (psm)[home-page]: Update.
[source](uri): Use it.
2017-12-18 17:52:58 +01:00
ab25eb7caa
gexp: 'computed-file' has a new #:guile parameter.
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* guix/gexp.scm (<computed-file>)[guile]: New field.
(computed-file): Add #:guile.
(computed-file-compiler): Honor 'guile'.
2017-12-18 17:52:58 +01:00
4e9dfe399b
gnu: Fix ambiguous 'zip' reference.
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* gnu/packages/photo.scm: Hide 'zip' from (srfi srfi-1).
2017-12-18 17:52:58 +01:00
399993f804
ui: Non-zero exit for compound '&message' and '&error-location' conditions.
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* guix/ui.scm (call-with-error-handling): When both 'message?' and
'error-location?' are true, add call to 'exit'.
2017-12-18 17:52:58 +01:00
9f1e39d1fc
system: examples: Add a template for BeagleBone Black.
...
* gnu/system/examples/beaglebone-black.tmpl: New file.
* Makefile.am (EXAMPLES): Add it.
* gnu/system/install.scm (/etc/configuration-files): Add it.
2017-12-18 15:28:14 +01:00
af8c547d33
gnu: claws-mail: Update to 3.16.0.
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* gnu/packages/mail.scm (claws-mail): Update to 3.16.0.
2017-12-18 15:22:08 +01:00
b05e8ee120
services: nginx: Allow to add raw content to the server blocks.
...
* doc/guix.texi (Web Services): Document 'raw-content'.
* gnu/services/web.scm (<nginx-server-configuration>)[raw-content]: New field.
(emit-nginx-server-config): Add it.
2017-12-18 12:03:14 +01:00
8b223ceac4
services: nginx: Replace 'http-port' and 'https-port' with 'listen'.
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* doc/guix.texi (Web Services, Version Control Services): Update accordingly.
* gnu/services/certbot.scm (certbot-nginx-server-configurations): Likewise.
* gnu/services/version-control.scm (%cgit-configuration-nginx): Likewise.
* gnu/services/web.scm (<nginx-server-configuration>,
emit-nginx-server-config): Likewise.
* gnu/tests/version-control.scm (%cgit-configuration-nginx,
%git-nginx-configuration): Likewise.
* gnu/tests/web.scm (%nginx-servers, %php-fpm-nginx-server-blocks): Likewise.
2017-12-18 12:03:14 +01:00
f1a2b1cb20
gnu: r-seurat: Update to 2.1.0.
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* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0.
[propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica,
r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr,
r-rcppeigen, r-fastica.
2017-12-18 12:01:35 +01:00
fff9b88439
gnu: Add r-diffusionmap.
...
* gnu/packages/graph.scm (r-diffusionmap): New variable.
2017-12-18 12:01:35 +01:00
007f6d9885
gnu: Add r-ggjoy.
...
* gnu/packages/cran.scm (r-ggjoy): New variable.
2017-12-18 12:01:34 +01:00
f90018e568
gnu: Add r-ggridges.
...
* gnu/packages/cran.scm (r-ggridges): New variable.
2017-12-18 12:01:34 +01:00
ae3f207951
gnu: Add r-scatterplot3d.
...
* gnu/packages/cran.scm (r-scatterplot3d): New variable.
2017-12-18 12:01:34 +01:00
15ef07f00e
gnu: Add r-sdmtools.
...
* gnu/packages/cran.scm (r-sdmtools): New variable.
2017-12-18 12:01:34 +01:00
bf025ff6f2
gnu: Add r-dtw.
...
* gnu/packages/cran.scm (r-dtw): New variable.
2017-12-18 12:01:34 +01:00
ae16426007
gnu: Add r-ica.
...
* gnu/packages/cran.scm (r-ica): New variable.
2017-12-18 12:01:34 +01:00
8271b8d22a
gnu: r-seurat: Fix ModularityOptimizer.jar.
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* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class
attribute in manifest.
2017-12-18 12:01:34 +01:00
Ricardo Wurmus